View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13306_low_12 (Length: 376)
Name: NF13306_low_12
Description: NF13306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13306_low_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 358
Target Start/End: Original strand, 27523844 - 27524165
Alignment:
| Q |
18 |
gaacttggtgatgacaacttataatttgtaggcataaaaataatgaatttcaattgcaaatgttggtaaataaaattatttcatattcattttagagacn |
117 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
27523844 |
gaacttggtgataacaacttataatttgtaggcataaaaataatgaatttcaattgcaaatgttggtaaataaa---------tattcattttagagact |
27523934 |
T |
|
| Q |
118 |
nnnnnnnnnnnnnnnaaagctattttctccattattcgtataatactataatattcttatatttgaacgagtcattaactaactctatgtcctcgtctat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27523935 |
ttttttcaattttttaaagctattttctccattattcgtataata--------ttcttatatttgaacgagtcattaactaactctatgtcctcgtctat |
27524026 |
T |
|
| Q |
218 |
taacggtaactctacttgcctttggtaataaatgcatgctgcattttttcttcaacaaccaaaccaaactgtgttatagcctttcagtcaatagacttgt |
317 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27524027 |
taacggtaact--acttgcctttggtaataaatgcatgctgcattttttcttcaacaaccaaaccaaactgtgttatagcctttcagtcaatagacttgt |
27524124 |
T |
|
| Q |
318 |
agttgatggtgcaggaagcttggaaaataaacacatggtga |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
27524125 |
agttgatggtgcaggaagcttggaaaataaacaaatggtga |
27524165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University