View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13306_low_13 (Length: 370)

Name: NF13306_low_13
Description: NF13306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13306_low_13
NF13306_low_13
[»] chr5 (1 HSPs)
chr5 (24-360)||(39943434-39943770)
[»] chr3 (3 HSPs)
chr3 (24-360)||(28739175-28739514)
chr3 (24-360)||(28749126-28749456)
chr3 (24-360)||(28753139-28753469)


Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 24 - 360
Target Start/End: Original strand, 39943434 - 39943770
Alignment:
Q  24 cttacatggtcttcaaggttacagggtatgttgtctttctacatttcaattttttctttatttaaattgtaggcgaaaatctactattttgacaaatact 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  39943434 cttacatggtcttcaaggttacagggtatgttgtctttctacatttcaattttttatttatttaaattgtaggcgaaaatctactattttgacaaatact 39943533  T
Q  124 ccacttttgtaagtatattttgaaattgatatggaaaaatagtagtttctcattggatatcatcgtaaaacatagttaattggattgaaacaagtacaaa 223  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  39943534 ccacttttgtaagtataatttgaaattgatatggaaaaatagtagtttctcattggatatcatcgtaaaacatagttaattagattgaaacaagtacaaa 39943633  T
Q  224 actgaaatttggagattttctgatgcaatagattttttcgatgtgactggttggtaatgtattcttttggtatttttctaattgtattctctttaaacta 323  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39943634 actggaatttggacattttctgatgcaatagattttttcgatgtgactggttggtaatgtattcttttggtatttttctaattgtattctctttaaacta 39943733  T
Q  324 caggttttcataggcatagcaatgattcttgatgatg 360  Q
    ||||||||||||||||||||||||||||||| |||||    
T  39943734 caggttttcataggcatagcaatgattcttggtgatg 39943770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 24 - 360
Target Start/End: Complemental strand, 28739514 - 28739175
Alignment:
Q  24 cttacatggtcttcaaggttacagggtatgttgtctttctacatttcaattttttctttatttaaattgtaggcgaaaatctactattttgacaaatact 123  Q
    |||||||||||||||||||||||  ||| |||||||||||  ||||| ||||||| |||||||||||||| ||| |||||||||  |||||| | |||||    
T  28739514 cttacatggtcttcaaggttacaaagtaagttgtctttctgtatttctattttttatttatttaaattgttggcaaaaatctacatttttgatacatact 28739415  T
Q  124 ccacttttgtaagtatattttgaaattgatatggaaaaatagtagtttctcattggatatcatcgtaaaacatagttaattggattgaaacaagtacaaa 223  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | | ||| | |||||||||||||||| |||||  |||    
T  28739414 ccatttttgtaagtatattttgaaattgatatggaaaaatagtagtttcttattggatatcaactttaaatacagttaattggattgaagcaagtgaaaa 28739315  T
Q  224 actgaaatttggagattttctgatgcaatagat-tttttcgatgtgact--ggttggtaatgtattcttttggtatttttctaattgtattctctttaaa 320  Q
    |||| ||| |||| || ||||||||||| || |  ||||| ||||||||  ||||| |||||||||  |||||| |||| ||||||||||||| ||||||    
T  28739314 actggaatatggacatattctgatgcaaaaggtcattttcaatgtgactacggttgataatgtatttctttggtcttttcctaattgtattctttttaaa 28739215  T
Q  321 ctacaggttttcataggcatagcaatgattcttgatgatg 360  Q
      |||||||||||||  |||||||||||| |||| |||||    
T  28739214 tcacaggttttcatatccatagcaatgatccttggtgatg 28739175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 24 - 360
Target Start/End: Complemental strand, 28749456 - 28749126
Alignment:
Q  24 cttacatggtcttcaaggttacagggtatgtt-gtctttctacatttcaattttttctttatttaaattgtaggcgaaaatctactattttgacaaatac 122  Q
    |||||||||||||||||||||||  ||| ||| ||||||||  ||||| ||||| | ||||||||| ||||||||||||| ||||  ||||||||| |||    
T  28749456 cttacatggtcttcaaggttacaaagtaagtttgtctttcttgatttcgattttctatttatttaacttgtaggcgaaaacctacatttttgacaa-tac 28749358  T
Q  123 tccactttt-gtaagtatattttgaaattgatatggaaaaatagtagtttctcattggatatcatcgtaaaacatagttaattggattgaaacaagtaca 221  Q
    ||||||||| ||||||||| |||| ||||| ||| ||||||||||||||||||| ||||||||| | ||||| | ||||| |||||||||||||||||||    
T  28749357 tccactttttgtaagtatactttggaattggtatagaaaaatagtagtttctcaatggatatcaacttaaaagacagttacttggattgaaacaagtaca 28749258  T
Q  222 aaactgaaatttggagattttctgatgcaatagat-tttttcga--tgtgactggttggtaatgtattcttttggtatttttctaattgtattctcttta 318  Q
    |||||| |||||||| ||          | ||||| |||||| |  |||||||||||| |||||||||||||||||| ||||||||||||||||| ||||    
T  28749257 aaactggaatttggacat----------actagatctttttcaatgtgtgactggttgataatgtattcttttggtagttttctaattgtattcttttta 28749168  T
Q  319 aactacaggttttcataggcatagcaatgattcttgatgatg 360  Q
    ||  |||||||||||||| |||||||||||| |||| |||||    
T  28749167 aatcacaggttttcatagccatagcaatgatccttggtgatg 28749126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 24 - 360
Target Start/End: Complemental strand, 28753469 - 28753139
Alignment:
Q  24 cttacatggtcttcaaggttacagggtatgtt-gtctttctacatttcaattttttctttatttaaattgtaggcgaaaatctactattttgacaaatac 122  Q
    |||||||||||||||||||||||  ||| ||| ||||||||  ||||| ||||| | ||||||||| ||||||||||||| ||||  ||||||||| |||    
T  28753469 cttacatggtcttcaaggttacaaagtaagtttgtctttcttgatttcgattttctatttatttaacttgtaggcgaaaacctacatttttgacaa-tac 28753371  T
Q  123 tccactttt-gtaagtatattttgaaattgatatggaaaaatagtagtttctcattggatatcatcgtaaaacatagttaattggattgaaacaagtaca 221  Q
    ||||||||| ||||||||| |||| ||||| ||| ||||||||||||||||||| ||||||||| | ||||| | ||||| |||||||||||||||||||    
T  28753370 tccactttttgtaagtatactttggaattggtatagaaaaatagtagtttctcaatggatatcaacttaaaagacagttacttggattgaaacaagtaca 28753271  T
Q  222 aaactgaaatttggagattttctgatgcaatagat-tttttcga--tgtgactggttggtaatgtattcttttggtatttttctaattgtattctcttta 318  Q
    |||||| |||||||| ||          | ||||| |||||| |  |||||||||||| |||||||||||||||||| ||||||||||||||||| ||||    
T  28753270 aaactggaatttggacat----------actagatctttttcaatgtgtgactggttgataatgtattcttttggtagttttctaattgtattcttttta 28753181  T
Q  319 aactacaggttttcataggcatagcaatgattcttgatgatg 360  Q
    ||  |||||||||||||| |||||||||||| |||| |||||    
T  28753180 aatcacaggttttcatagccatagcaatgatccttggtgatg 28753139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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