View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13306_low_15 (Length: 358)

Name: NF13306_low_15
Description: NF13306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13306_low_15
NF13306_low_15
[»] chr1 (29 HSPs)
chr1 (93-341)||(23472087-23472336)
chr1 (187-319)||(36794616-36794750)
chr1 (145-319)||(43105106-43105284)
chr1 (141-319)||(40118603-40118785)
chr1 (1-38)||(23472391-23472428)
chr1 (198-319)||(48390026-48390146)
chr1 (214-319)||(21854429-21854534)
chr1 (170-319)||(24158651-24158803)
chr1 (145-277)||(37947112-37947248)
chr1 (172-312)||(26760570-26760713)
chr1 (175-270)||(43757638-43757734)
chr1 (137-188)||(3159372-3159423)
chr1 (145-188)||(35369704-35369747)
chr1 (145-188)||(45333574-45333617)
chr1 (205-319)||(3919301-3919415)
chr1 (169-319)||(6396328-6396481)
chr1 (141-230)||(18610862-18610952)
chr1 (196-319)||(23399934-23400059)
chr1 (221-319)||(39815347-39815445)
chr1 (234-319)||(22674713-22674798)
chr1 (205-319)||(23554752-23554868)
chr1 (141-266)||(29094636-29094763)
chr1 (141-319)||(41564768-41564950)
chr1 (258-319)||(42843353-42843414)
chr1 (239-319)||(11038263-11038343)
chr1 (239-319)||(34157521-34157600)
chr1 (140-188)||(37685330-37685378)
chr1 (140-188)||(37700140-37700188)
chr1 (243-319)||(45350089-45350165)
[»] chr5 (22 HSPs)
chr5 (141-266)||(11306752-11306878)
chr5 (237-319)||(267014-267096)
chr5 (235-319)||(3031835-3031919)
chr5 (214-319)||(24329947-24330052)
chr5 (145-188)||(611868-611912)
chr5 (144-312)||(2863558-2863728)
chr5 (145-277)||(4434514-4434649)
chr5 (239-319)||(20985519-20985599)
chr5 (145-188)||(1079976-1080019)
chr5 (140-255)||(12203212-12203329)
chr5 (170-317)||(17489351-17489501)
chr5 (141-319)||(25585344-25585526)
chr5 (141-230)||(37821029-37821120)
chr5 (138-319)||(39032489-39032674)
chr5 (239-319)||(582857-582937)
chr5 (140-188)||(1764223-1764271)
chr5 (263-311)||(3167328-3167376)
chr5 (140-188)||(5721841-5721889)
chr5 (140-188)||(15479468-15479516)
chr5 (239-319)||(18729279-18729359)
chr5 (140-188)||(28306156-28306204)
chr5 (239-319)||(34693206-34693286)
[»] chr4 (29 HSPs)
chr4 (139-319)||(29577322-29577506)
chr4 (145-319)||(29863552-29863730)
chr4 (169-319)||(4949151-4949304)
chr4 (141-230)||(8487727-8487818)
chr4 (177-319)||(54803255-54803398)
chr4 (198-319)||(48791548-48791667)
chr4 (139-319)||(22893870-22894053)
chr4 (139-319)||(22945538-22945721)
chr4 (195-317)||(34114061-34114185)
chr4 (139-188)||(46634098-46634147)
chr4 (186-319)||(32901330-32901465)
chr4 (144-227)||(43307256-43307340)
chr4 (145-188)||(10250539-10250582)
chr4 (145-188)||(26724993-26725036)
chr4 (195-319)||(36947036-36947162)
chr4 (141-280)||(42915108-42915250)
chr4 (139-277)||(45678306-45678448)
chr4 (169-319)||(1987630-1987783)
chr4 (239-317)||(2788558-2788636)
chr4 (239-313)||(17805459-17805533)
chr4 (262-319)||(31995928-31995986)
chr4 (169-319)||(53781754-53781906)
chr4 (140-192)||(37380215-37380268)
chr4 (139-188)||(37997254-37997303)
chr4 (140-188)||(5622457-5622505)
chr4 (145-193)||(27964991-27965039)
chr4 (237-317)||(30250288-30250368)
chr4 (239-319)||(39449174-39449253)
chr4 (239-311)||(48650246-48650318)
[»] chr3 (29 HSPs)
chr3 (139-319)||(34208268-34208452)
chr3 (169-319)||(9158953-9159106)
chr3 (176-318)||(38471644-38471789)
chr3 (140-319)||(33971884-33972067)
chr3 (196-312)||(1261320-1261438)
chr3 (141-311)||(9027622-9027796)
chr3 (140-319)||(29705904-29706086)
chr3 (145-188)||(41505495-41505538)
chr3 (196-319)||(28300287-28300412)
chr3 (266-319)||(21239095-21239148)
chr3 (243-319)||(7351632-7351708)
chr3 (221-317)||(17118400-17118496)
chr3 (137-227)||(43149227-43149319)
chr3 (239-319)||(45517647-45517727)
chr3 (260-319)||(10347484-10347543)
chr3 (169-227)||(16295559-16295618)
chr3 (196-319)||(30664504-30664627)
chr3 (196-319)||(34145484-34145608)
chr3 (241-319)||(36799399-36799477)
chr3 (139-188)||(42477959-42478008)
chr3 (234-319)||(47276227-47276312)
chr3 (239-319)||(1295333-1295413)
chr3 (239-319)||(1834507-1834587)
chr3 (145-185)||(20548017-20548057)
chr3 (140-188)||(26014811-26014859)
chr3 (239-319)||(32151889-32151969)
chr3 (141-227)||(35368706-35368794)
chr3 (239-319)||(48205046-48205126)
chr3 (262-318)||(52381184-52381240)
[»] chr8 (21 HSPs)
chr8 (141-319)||(21649058-21649238)
chr8 (239-312)||(32234442-32234515)
chr8 (144-227)||(42651015-42651100)
chr8 (141-319)||(18549980-18550162)
chr8 (145-319)||(22203107-22203285)
chr8 (141-319)||(22836027-22836209)
chr8 (169-319)||(27300347-27300500)
chr8 (221-319)||(37784346-37784444)
chr8 (243-319)||(10591867-10591943)
chr8 (176-319)||(5742581-5742727)
chr8 (140-255)||(13924076-13924193)
chr8 (141-227)||(21273599-21273686)
chr8 (138-177)||(42768204-42768243)
chr8 (141-230)||(7678824-7678914)
chr8 (169-319)||(32674149-32674302)
chr8 (169-230)||(35701760-35701822)
chr8 (234-312)||(42688435-42688513)
chr8 (139-188)||(27325756-27325805)
chr8 (140-188)||(7271851-7271899)
chr8 (137-188)||(33451586-33451638)
chr8 (136-188)||(43397776-43397828)
[»] chr2 (23 HSPs)
chr2 (141-319)||(35705805-35705986)
chr2 (139-320)||(37076657-37076838)
chr2 (239-320)||(9384375-9384456)
chr2 (239-319)||(12208443-12208523)
chr2 (141-227)||(35518370-35518458)
chr2 (172-319)||(13850104-13850254)
chr2 (141-230)||(16463384-16463475)
chr2 (147-277)||(24491571-24491705)
chr2 (139-179)||(3838913-3838953)
chr2 (239-319)||(19637230-19637310)
chr2 (239-319)||(19835823-19835903)
chr2 (141-319)||(27529530-27529710)
chr2 (145-188)||(9207594-9207637)
chr2 (145-188)||(9990695-9990738)
chr2 (141-227)||(13711156-13711243)
chr2 (265-320)||(37878892-37878946)
chr2 (141-230)||(3091833-3091923)
chr2 (141-266)||(8757598-8757727)
chr2 (169-319)||(40721772-40721925)
chr2 (234-319)||(34373006-34373091)
chr2 (239-319)||(8352836-8352916)
chr2 (198-319)||(12256902-12257025)
chr2 (232-319)||(28494860-28494948)
[»] scaffold0514 (1 HSPs)
scaffold0514 (141-319)||(1735-1915)
[»] chr7 (18 HSPs)
chr7 (139-320)||(17039157-17039342)
chr7 (176-319)||(11070229-11070375)
chr7 (137-320)||(23034197-23034384)
chr7 (169-319)||(37969932-37970087)
chr7 (169-319)||(2600451-2600604)
chr7 (176-317)||(640395-640539)
chr7 (234-319)||(16567317-16567402)
chr7 (234-319)||(16598260-16598345)
chr7 (139-188)||(38861094-38861143)
chr7 (234-318)||(35590764-35590848)
chr7 (198-319)||(48522157-48522280)
chr7 (140-312)||(41910072-41910248)
chr7 (169-230)||(384643-384705)
chr7 (258-319)||(33341134-33341195)
chr7 (171-227)||(47379655-47379712)
chr7 (239-319)||(28548211-28548291)
chr7 (136-188)||(30941381-30941433)
chr7 (234-310)||(47379586-47379662)
[»] scaffold0058 (1 HSPs)
scaffold0058 (144-319)||(2944-3123)
[»] chr6 (12 HSPs)
chr6 (141-319)||(10557410-10557592)
chr6 (245-317)||(3401087-3401159)
chr6 (246-319)||(11635618-11635691)
chr6 (145-188)||(5080591-5080634)
chr6 (138-188)||(8098619-8098669)
chr6 (141-270)||(9395225-9395358)
chr6 (243-317)||(31934151-31934225)
chr6 (258-319)||(11742991-11743052)
chr6 (140-188)||(18065113-18065162)
chr6 (140-188)||(25811862-25811910)
chr6 (141-319)||(32253781-32253963)
chr6 (140-188)||(34047386-34047434)
[»] scaffold0592 (1 HSPs)
scaffold0592 (169-319)||(911-1064)
[»] scaffold0199 (1 HSPs)
scaffold0199 (145-188)||(8672-8715)
[»] scaffold0024 (1 HSPs)
scaffold0024 (141-317)||(48657-48837)
[»] scaffold0115 (1 HSPs)
scaffold0115 (141-227)||(15078-15164)
[»] scaffold0036 (1 HSPs)
scaffold0036 (141-227)||(18099-18185)


Alignment Details
Target: chr1 (Bit Score: 154; Significance: 1e-81; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 93 - 341
Target Start/End: Complemental strand, 23472336 - 23472087
Alignment:
Q  93 gggttgtaaatgtttttaatcactctaaatatacatacaataagttttgagtaatgatatttgaacaattactttttacaacttttgagacaa-cttgtt 191  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||| |||| |    
T  23472336 gggttgtacatgtttttaatcactctaaatatacatacaataagttttgagtaatgatatttgaacaaatactttttacaacttttaggacaaccttgct 23472237  T
Q  192 atactctcttgttattggttagaaacaatagagagaaaagtttagaaagagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttata 291  Q
     ||||||||||||||||||||||||||||| ||||||||  | ||| ||| |||||||| | |   ||| ||||||||||| ||||||||||||||| ||    
T  23472236 ttactctcttgttattggttagaaacaataaagagaaaaagtaagagagaaaataagaatacagggtgaatatgaaagaaacaattattcaaaatttgta 23472137  T
Q  292 taaaaatagttgtacaaatataatttcttcttcgtttttcaaactacttt 341  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  23472136 taaaaatagttgtacaaatatcatttctccttcgtttttcaaactacttt 23472087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 187 - 319
Target Start/End: Complemental strand, 36794750 - 36794616
Alignment:
Q  187 ttgttatactctcttgttattggttagaaacaatagagaga--aaagtttagaaagagaataagaacataacttgagtatgaaagaaaaaattattcaaa 284  Q
    ||||||| ||||||| |  ||||| | ||||||||||||||  ||| |  |||||||||||||||| ||||  ||||||||||||| ||| |||| ||||    
T  36794750 ttgttattctctcttttcgttggtcaaaaacaatagagagagaaaaatgaagaaagagaataagaatataatctgagtatgaaagagaaatttatccaaa 36794651  T
Q  285 atttatataaaaatagttgtacaaatataatttct 319  Q
    | |||||  |||||| |||||||||||| ||||||    
T  36794650 aattataccaaaataattgtacaaatatcatttct 36794616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 145 - 319
Target Start/End: Complemental strand, 43105284 - 43105106
Alignment:
Q  145 aatgatatttgaacaattactttt-tacaacttttgagacaacttg-ttatactctcttgttattggttagaaacaat--agagagaaaagtttagaaag 240  Q
    ||||||||||||||||||| |||  ||||| ||||| ||||||||  || | ||||||| |||||||| | ||| |||  |||||||||| |  ||| ||    
T  43105284 aatgatatttgaacaattattttggtacaatttttgggacaactttattgttctctctttttattggtcaaaaataatggagagagaaaaatgaagagag 43105185  T
Q  241 agaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    |||||||||| ||||  ||||||||| ||| |||||| |  |||| ||||| ||||||| |||||||||||| ||||||    
T  43105184 agaataagaagataatatgagtatgagagagaaaattgtataaaaattatacaaaaataattgtacaaatatcatttct 43105106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 319
Target Start/End: Original strand, 40118603 - 40118785
Alignment:
Q  141 gagtaatgatatttgaacaattactttt-tacaacttttgagacaac-ttgttatactctcttgttattggttagaaacaatag--agagaaaagtttag 236  Q
    ||||||||||||||||||||||  |||  ||||| ||||| |||||| ||||| | || |||| |||||||||| || |||| |  ||||||||    ||    
T  40118603 gagtaatgatatttgaacaatttttttgctacaatttttgggacaaccttgttgtgctttctttttattggttaaaatcaatggggagagaaaaaagaag 40118702  T
Q  237 aaagagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    | |||||||||||| ||||  ||||||||| ||| |||||| | ||||| ||||| ||||||  |||||||||||| ||||||    
T  40118703 agagagaataagaagataatgtgagtatgagagagaaaattgtacaaaaattatacaaaaatgattgtacaaatatcatttct 40118785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 23472428 - 23472391
Alignment:
Q  1 ctatttttatatggacattatccaaaattggatagtac 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  23472428 ctatttttatatggacattatccaaaattggatagtac 23472391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 319
Target Start/End: Original strand, 48390026 - 48390146
Alignment:
Q  198 tcttgttattggttagaaacaatagagagaaaagtttagaaagagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaa 297  Q
    |||| |||||||||| |||||||||||||||||    |||||||||||||||| ||||  ||||||||| ||| ||  || | ||||| || || |||||    
T  48390026 tctttttattggttaaaaacaatagagagaaaaagaaagaaagagaataagaagataatgtgagtatgagagagaagtttgtacaaaagttgtacaaaaa 48390125  T
Q  298 tagttgtacaaatataatttct 319  Q
    | ||||||| ||||||||||||    
T  48390126 tggttgtac-aatataatttct 48390146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 319
Target Start/End: Original strand, 21854429 - 21854534
Alignment:
Q  214 aaacaatagagagaaaagtttagaaagagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatata 313  Q
    |||||||||||||||||   |||| ||| |||||||||||||  ||||||||| ||| ||| || | ||||| || ||  |||||| ||||||||||||     
T  21854429 aaacaatagagagaaaaaggtagagagaaaataagaacataatatgagtatgagagagaaagttgtacaaaagttgtaccaaaataattgtacaaatatc 21854528  T
Q  314 atttct 319  Q
    ||||||    
T  21854529 atttct 21854534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 170 - 319
Target Start/End: Complemental strand, 24158803 - 24158651
Alignment:
Q  170 acaacttttgagacaactt-gttatactctcttgttattggttagaaacaata--gagagaaaagtttagaaagagaataagaacataacttgagtatga 266  Q
    ||||| ||||||||||||| ||| | || |||| |||||||| | ||||||||  |||||||||   |||| |||||||||||||||||  |||||||||    
T  24158803 acaacctttgagacaactttgttgttctgtcttcttattggtaaaaaacaataaagagagaaaaaggtagagagagaataagaacataatgtgagtatga 24158704  T
Q  267 aagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    |||| ||| || |  |||| || ||   |||| ||||||||||||| ||||||    
T  24158703 aagataaagttgtataaaagttgtaccgaaatggttgtacaaatatcatttct 24158651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 277
Target Start/End: Original strand, 37947112 - 37947248
Alignment:
Q  145 aatgatatttgaacaattacttt-ttacaacttttgagacaac-ttgttatactctcttgttattggttagaaacaat--agagagaaaagtttagaaag 240  Q
    |||||||||||||||| || ||| |||||||||||| |||||| ||||| | ||||||| | |||||| | |||||||  ||||||||||    ||| ||    
T  37947112 aatgatatttgaacaactattttgttacaacttttgggacaaccttgttgttctctcttctcattggtcaaaaacaatggagagagaaaaaggaagagag 37947211  T
Q  241 agaataagaacataacttgagtatgaaagaaaaaatt 277  Q
    |||||||||| ||||  ||||||||| ||| ||||||    
T  37947212 agaataagaagataatgtgagtatgatagagaaaatt 37947248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 312
Target Start/End: Complemental strand, 26760713 - 26760570
Alignment:
Q  172 aacttttgagacaac-ttgttatactctcttgttattggttagaaacaat--agagagaaaagtttagaaagagaataagaacataacttgagtatgaaa 268  Q
    ||||||||||||||| ||||| | ||||||| |||||||| | |||||||  ||||||||||    ||| |||||||||||| ||||  ||| ||||| |    
T  26760713 aacttttgagacaaccttgttgtgctctctttttattggtcaaaaacaatggagagagaaaaaagaagagagagaataagaaaataatatgattatgaga 26760614  T
Q  269 gaaaaaattattcaaaatttatataaaaatagttgtacaaatat 312  Q
    |||||  || | ||||| || || |||||| |||||||||||||    
T  26760613 gaaaatgttgtacaaaaattgtacaaaaatggttgtacaaatat 26760570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 270
Target Start/End: Complemental strand, 43757734 - 43757638
Alignment:
Q  175 ttttgagacaactt-gttatactctcttgttattggttagaaacaatagagagaaaagtttagaaagagaataagaacataacttgagtatgaaaga 270  Q
    |||||||||||||| ||| | ||||||| | |||||||| ||||||||| |||||||    ||| ||||||||| |||||||  |||||||||||||    
T  43757734 ttttgagacaactttgttgttctctcttttcattggttaaaaacaatagggagaaaaagaaagagagagaataaaaacataatgtgagtatgaaaga 43757638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 137 - 188
Target Start/End: Original strand, 3159372 - 3159423
Alignment:
Q  137 ttttgagtaatgatatttgaacaattactttttacaacttttgagacaactt 188  Q
    ||||||| ||||||||||||||||  | ||||||||||||||| ||||||||    
T  3159372 ttttgagaaatgatatttgaacaaccattttttacaacttttgtgacaactt 3159423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 188
Target Start/End: Original strand, 35369704 - 35369747
Alignment:
Q  145 aatgatatttgaacaattactttttacaacttttgagacaactt 188  Q
    ||||||||||||||||| | ||||||||||||||| ||||||||    
T  35369704 aatgatatttgaacaatcattttttacaacttttgtgacaactt 35369747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 188
Target Start/End: Original strand, 45333574 - 45333617
Alignment:
Q  145 aatgatatttgaacaattactttttacaacttttgagacaactt 188  Q
    ||||||||||||||||| | ||||||||||||||| ||||||||    
T  45333574 aatgatatttgaacaatcattttttacaacttttgtgacaactt 45333617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 319
Target Start/End: Complemental strand, 3919415 - 3919301
Alignment:
Q  205 attggttagaaacaatagagagaaaagtttagaaagagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgt 304  Q
    |||||| | |||||||||||| |||| |  ||| |||||||||||| ||||   |||||||| ||| ||| || | ||||| |||||  ||||| |||||    
T  3919415 attggtcaaaaacaatagagaaaaaaataaagagagagaataagaatataatgcgagtatgagagagaaagttgtccaaaaattataacaaaatggttgt 3919316  T
Q  305 acaaatataatttct 319  Q
    |||||||| ||||||    
T  3919315 acaaatatcatttct 3919301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 319
Target Start/End: Complemental strand, 6396481 - 6396328
Alignment:
Q  169 tacaacttttgagacaactt-gttatactctcttgttattggttagaaacaataga--gagaaaagtttagaaagagaataagaacataacttgagtatg 265  Q
    |||||| ||||||||||||| ||| | ||||||| | |||||||| ||||||||||  |||||||    ||| ||||||||| |||| ||  ||||||||    
T  6396481 tacaacatttgagacaactttgttgttctctcttctcattggttaaaaacaatagaaagagaaaaaggaagagagagaataaaaacacaatgtgagtatg 6396382  T
Q  266 aaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    ||||| ||| || | ||||| || ||  ||||| ||||||| ||||| ||||||    
T  6396381 aaagagaaagttgtacaaaagttgtaccaaaatggttgtaccaatatcatttct 6396328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 230
Target Start/End: Complemental strand, 18610952 - 18610862
Alignment:
Q  141 gagtaatgatatttgaacaattactttttacaacttttgagacaacttgt-tatactctcttgttattggttagaaacaatagagagaaaa 230  Q
    ||||| ||||||||||||||||| ||   |||||||||| ||||||||   | | ||||||| |||||||| | |||||||||||||||||    
T  18610952 gagtagtgatatttgaacaattaattaagacaacttttgtgacaactttcctttcctctctttttattggtcaaaaacaatagagagaaaa 18610862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 319
Target Start/End: Original strand, 23399934 - 23400059
Alignment:
Q  196 tctcttgttattggttagaaacaataga--gagaaaagtttagaaagagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatata 293  Q
    |||||| |||||||| | ||||||||||  |||||||    ||| |||||||||||| | ||  ||||||||| ||| || ||| | ||||| || ||||    
T  23399934 tctcttcttattggtcaaaaacaatagaaagagaaaaaggaagagagagaataagaagaaaatatgagtatgagagagaagattgtacaaaagttgtata 23400033  T
Q  294 aaaatagttgtacaaatataatttct 319  Q
    ||||| ||||||||||||| ||||||    
T  23400034 aaaatggttgtacaaatatcatttct 23400059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 319
Target Start/End: Complemental strand, 39815445 - 39815347
Alignment:
Q  221 agagagaaaagtttagaaagagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    |||||||||| |  ||| |||||||||||| ||||  ||||||||| ||| ||| || | ||||| || ||  ||||| ||||||||||||||||||||    
T  39815445 agagagaaaaataaagagagagaataagaatataatgtgagtatgagagagaaagttgtccaaaagttgtagcaaaatggttgtacaaatataatttct 39815347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 319
Target Start/End: Complemental strand, 22674798 - 22674713
Alignment:
Q  234 tagaaagagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    |||| |||||||| ||| ||||  ||||||||| ||| ||| || | ||||| || || |||||||||||||||||||| ||||||    
T  22674798 tagagagagaatatgaaaataatgtgagtatgagagagaaagttgtacaaaaattgtacaaaaatagttgtacaaatatcatttct 22674713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 319
Target Start/End: Complemental strand, 23554868 - 23554752
Alignment:
Q  205 attggttagaaacaat--agagagaaaagtttagaaagagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagtt 302  Q
    |||||||| |||||||  ||||||||||    ||| |||||||||||| ||||  ||||||||| ||| ||| || || |||| ||||  |||||| |||    
T  23554868 attggttaaaaacaatggagagagaaaaaggaagagagagaataagaatataatgtgagtatgagagataaagttgtttaaaaattatcaaaaaatggtt 23554769  T
Q  303 gtacaaatataatttct 319  Q
    |||||||||| ||||||    
T  23554768 gtacaaatatcatttct 23554752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 266
Target Start/End: Original strand, 29094636 - 29094763
Alignment:
Q  141 gagtaatgatatttgaacaattactttt--tacaacttttgagacaa-cttgttatactctcttgttattggttagaaacaatagagagaaaagtttaga 237  Q
    |||||||||||||||||||| | |||||  ||||||||||| ||||| ||| || |  |||||| |||||||| | || ||||||||||||||    |||    
T  29094636 gagtaatgatatttgaacaact-cttttgatacaacttttgggacaaccttattgtgttctcttcttattggtcaaaatcaatagagagaaaaagaaaga 29094734  T
Q  238 aagagaataagaacataacttgagtatga 266  Q
     |||||||||||| ||||  |||||||||    
T  29094735 gagagaataagaagataatgtgagtatga 29094763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 319
Target Start/End: Original strand, 41564768 - 41564950
Alignment:
Q  141 gagtaatgatatttgaacaattactttt--tacaacttttgagacaac-ttgttatactctcttgttattggttagaaacaata--gagagaaaagttta 235  Q
    ||||| |||||||||||||| | |||||  ||||| ||||| |||||| ||||| |  |||||| |||||||| | ||||||||  |||||||||    |    
T  41564768 gagtagtgatatttgaacaact-cttttggtacaatttttgggacaaccttgttgtgttctcttcttattggtcaaaaacaatacagagagaaaaaggaa 41564866  T
Q  236 gaaagagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    || ||| |||||||| ||||  ||||||| ||||||||  || | ||||| || || |||||| ||||||||||||| ||||||    
T  41564867 gagagaaaataagaagataatgtgagtataaaagaaaaggttgtacaaaagttgtacaaaaatggttgtacaaatatcatttct 41564950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 319
Target Start/End: Original strand, 42843353 - 42843414
Alignment:
Q  258 tgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    ||||||| | |||||||||||| ||||| ||||  |||||| ||||||||||||| ||||||    
T  42843353 tgagtataagagaaaaaattatgcaaaagttatcaaaaaattgttgtacaaatatcatttct 42843414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 319
Target Start/End: Complemental strand, 11038343 - 11038263
Alignment:
Q  239 agagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    ||||||||| |||||||  ||||||||||||| ||| || | ||||| |||||  ||||| |||||| |||||| ||||||    
T  11038343 agagaataaaaacataatgtgagtatgaaagagaaagttgtacaaaaattataccaaaatggttgtataaatatcatttct 11038263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 319
Target Start/End: Complemental strand, 34157600 - 34157521
Alignment:
Q  239 agagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    |||||||||||| ||||  ||||||||| ||| ||| || || |||| |||| ||||||| ||||||||||||| ||||||    
T  34157600 agagaataagaagataatgtgagtatgagagataaagttgttaaaaaattat-taaaaatggttgtacaaatatcatttct 34157521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 188
Target Start/End: Original strand, 37685330 - 37685378
Alignment:
Q  140 tgagtaatgatatttgaacaattactttttacaacttttgagacaactt 188  Q
    |||| ||||||||||||||||  | ||||||||||||||| ||||||||    
T  37685330 tgagaaatgatatttgaacaaccattttttacaacttttgtgacaactt 37685378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 188
Target Start/End: Complemental strand, 37700188 - 37700140
Alignment:
Q  140 tgagtaatgatatttgaacaattactttttacaacttttgagacaactt 188  Q
    |||| ||||||||||||||||  | ||||||||||||||| ||||||||    
T  37700188 tgagaaatgatatttgaacaaccattttttacaacttttgtgacaactt 37700140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 319
Target Start/End: Original strand, 45350089 - 45350165
Alignment:
Q  243 aataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    |||||||| ||||  ||||||||| ||||||||||||  |||| ||||   |||||| |||||||||||| ||||||    
T  45350089 aataagaatataatgtgagtatgagagaaaaaattatctaaaaattatcacaaaataattgtacaaatatcatttct 45350165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 141 - 266
Target Start/End: Complemental strand, 11306878 - 11306752
Alignment:
Q  141 gagtaatgatatttgaacaattactttttacaacttttgagacaacttgttata-ctctcttgttattggttagaaacaatagagagaaaagtttagaaa 239  Q
    ||||| |||||||||||||| || ||  |||||||||||||||||||| || |  ||||||| | |||||||| ||||||||||||||||| |  ||| |    
T  11306878 gagtagtgatatttgaacaactatttgatacaacttttgagacaacttcttttttctctcttttcattggttaaaaacaatagagagaaaaataaagata 11306779  T
Q  240 gagaataagaacataacttgagtatga 266  Q
    ||||||||||  ||||| |||||||||    
T  11306778 gagaataagagtataacgtgagtatga 11306752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 237 - 319
Target Start/End: Original strand, 267014 - 267096
Alignment:
Q  237 aaagagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    ||||||||||| |||||||| |||||| ||| || |||||||| ||||| |||||| ||||| || |||||||||| ||||||    
T  267014 aaagagaataataacataacgtgagtacgaaggagaaaattatacaaaaattatatcaaaatggtagtacaaatatcatttct 267096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 235 - 319
Target Start/End: Complemental strand, 3031919 - 3031835
Alignment:
Q  235 agaaagagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    |||||||||||||||| ||||  ||||||||||||| ||| || | ||||| || || |||||| ||||||||||||| ||||||    
T  3031919 agaaagagaataagaagataatgtgagtatgaaagagaaagttgtacaaaagttgtacaaaaatggttgtacaaatatcatttct 3031835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 319
Target Start/End: Original strand, 24329947 - 24330052
Alignment:
Q  214 aaacaatagagagaaaagtttagaaagagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatata 313  Q
    |||||||||||||||||   |||| ||| |||||||||||||  ||||||||| ||| ||| || | ||||| || ||  |||||| ||||||||||||     
T  24329947 aaacaatagagagaaaaaggtagagagaaaataagaacataatatgagtatgagagagaaagttgtacaaaagttgtaccaaaataattgtacaaatatc 24330046  T
Q  314 atttct 319  Q
    ||||||    
T  24330047 atttct 24330052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 188
Target Start/End: Original strand, 611868 - 611912
Alignment:
Q  145 aatgatatttgaacaattacttttt-acaacttttgagacaactt 188  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||    
T  611868 aatgatatttgaacaattactttttgacaacttttgtgacaactt 611912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 312
Target Start/End: Complemental strand, 2863728 - 2863558
Alignment:
Q  144 taatgatatttgaacaattactttttacaacttttgagacaac-ttgttatactctcttgttattggttagaaacaat--agagagaaaagtttagaaag 240  Q
    ||||||||||| |||||||| ||  ||||| ||||| |||||| ||||| |  |||||| | |||||| | ||| |||  ||||||||||    ||||||    
T  2863728 taatgatatttaaacaattatttagtacaatttttgggacaaccttgttgttatctcttttcattggtcaaaaataatggagagagaaaaaggaagaaag 2863629  T
Q  241 agaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatat 312  Q
    |||||||||| ||||  ||||||| | ||| |||||| | ||||| |||||||||||| ||||| |||||||    
T  2863628 agaataagaaaataatgtgagtat-agagagaaaattgtacaaaagttatataaaaatggttgttcaaatat 2863558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 277
Target Start/End: Complemental strand, 4434649 - 4434514
Alignment:
Q  145 aatgatatttgaacaattactttttacaactttt-gagacaacttgttatactctcttgttattggttagaaacaat--agagagaaaagtttagaaaga 241  Q
    ||||||||||||||||||| ||  |||||||||| | |||| ||| || | |||| || | |||||||| |||||||  |||||||||| |  ||| |||    
T  4434649 aatgatatttgaacaattatttcatacaacttttggtgacagcttttttttctcttttttcattggttaaaaacaatggagagagaaaaatgaagagaga 4434550  T
Q  242 gaataagaacataacttgagtatgaaagaaaaaatt 277  Q
    ||||||||  ||||  ||||||||| ||||||||||    
T  4434549 gaataagataataatgtgagtatgagagaaaaaatt 4434514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 319
Target Start/End: Original strand, 20985519 - 20985599
Alignment:
Q  239 agagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    |||||||||||| ||||  ||||||||| ||| ||| || | ||||| ||||| |||||| ||||||||||||| ||||||    
T  20985519 agagaataagaagataatgtgagtatgagagagaaagttgtacaaaaattatacaaaaatggttgtacaaatatcatttct 20985599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 188
Target Start/End: Complemental strand, 1080019 - 1079976
Alignment:
Q  145 aatgatatttgaacaattactttttacaacttttgagacaactt 188  Q
    ||||||||||||||||||| ||||||||| ||||| ||||||||    
T  1080019 aatgatatttgaacaattattttttacaatttttgtgacaactt 1079976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 140 - 255
Target Start/End: Complemental strand, 12203329 - 12203212
Alignment:
Q  140 tgagtaatgatatttgaacaattactttt--tacaacttttgagacaa-cttgttatactctcttgttattggttagaaacaatagagagaaaagtttag 236  Q
    |||||||| |||||||||||| | |||||  ||||||||||| ||||| |||||| | ||||||| | |||||||| || ||||||||||||||    ||    
T  12203329 tgagtaataatatttgaacaact-cttttggtacaacttttgtgacaatcttgttgtcctctcttctcattggttaaaaccaatagagagaaaaaagaag 12203231  T
Q  237 aaagagaataagaacataa 255  Q
    | |||||||||||| ||||    
T  12203230 agagagaataagaagataa 12203212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 170 - 317
Target Start/End: Complemental strand, 17489501 - 17489351
Alignment:
Q  170 acaacttttgagacaa-cttgttatactctcttgttattggttagaaacaat--agagagaaaagtttagaaagagaataagaacataacttgagtatga 266  Q
    |||||||| | ||||| |||||| | ||||||| |||||||| | |||||||  |||||||||| || ||| ||| ||||||||  | |  |||||||||    
T  17489501 acaactttggtgacaatcttgtttttctctcttcttattggtcaaaaacaatggagagagaaaaattaagagagataataagaatgtcatgtgagtatga 17489402  T
Q  267 aagaaaaaattattcaaaatttatataaaaatagttgtacaaatataattt 317  Q
     ||| |||||| |  |||| ||||  |||||||||||||||||||| ||||    
T  17489401 gagagaaaattgtgtaaaaattatcaaaaaatagttgtacaaatatcattt 17489351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 141 - 319
Target Start/End: Original strand, 25585344 - 25585526
Alignment:
Q  141 gagtaatgatatttgaacaattacttt-ttacaacttttgagacaactt-gttatactctcttgttattggttagaaacaata--gagagaaaagtttag 236  Q
    ||||||| |||||||||||| || ||| |||||||||||| || ||||| ||| |  | |||| |||||| | | ||||||||  |||||||||    ||    
T  25585344 gagtaataatatttgaacaactattttgttacaacttttgggagaactttgttgtgttatctttttattgatcaaaaacaatatagagagaaaaaggaag 25585443  T
Q  237 aaagagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    | | |||||||||||||||  ||||||||| ||| ||| || | ||||| || || |||||| ||||||||||||| ||||||    
T  25585444 agaaagaataagaacataatgtgagtatgagagagaaatttgtacaaaagttgtacaaaaatggttgtacaaatatcatttct 25585526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 141 - 230
Target Start/End: Original strand, 37821029 - 37821120
Alignment:
Q  141 gagtaatgatatttgaacaattactttt-tacaacttttgagacaac-ttgttatactctcttgttattggttagaaacaatagagagaaaa 230  Q
    ||||| |||||||||||||| || |||  ||||||||||| |||||| ||||| |  |||||| |||||||| | |||||||||||||||||    
T  37821029 gagtagtgatatttgaacaactattttggtacaacttttgggacaaccttgttgtgttctcttcttattggtcaaaaacaatagagagaaaa 37821120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 138 - 319
Target Start/End: Original strand, 39032489 - 39032674
Alignment:
Q  138 tttgagtaatgatatttgaacaattactttt--tacaacttttgagacaac-ttgttatactctcttgttattggttagaaacaatagagaga-aaagtt 233  Q
    |||||||| |||||||||||||| | |||||  ||||| ||||| |||||| ||||| |  |||||| |||||||| | |||||||||||||| ||||      
T  39032489 tttgagtagtgatatttgaacaact-cttttgatacaatttttgggacaaccttgttgtgttctcttcttattggtcaaaaacaatagagagagaaagag 39032587  T
Q  234 ta-gaaagagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
     | || |||||||||||| ||||  ||||||||| ||| ||  || | ||||| || || |||||| ||||||||||||| ||||||    
T  39032588 gaagagagagaataagaagataatatgagtatgagagagaaggttgtacaaaagttgtacaaaaatggttgtacaaatatcatttct 39032674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 319
Target Start/End: Original strand, 582857 - 582937
Alignment:
Q  239 agagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    |||||||||||| ||||  ||||||||| ||| |||||| || |||| ||||   |||||||||||| |||||| ||||||    
T  582857 agagaataagaatataatatgagtatgagagagaaaattgtttaaaagttatcacaaaatagttgtaaaaatatcatttct 582937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 188
Target Start/End: Original strand, 1764223 - 1764271
Alignment:
Q  140 tgagtaatgatatttgaacaattactttttacaacttttgagacaactt 188  Q
    |||| ||||||||||||||||| | |||||||||||| || ||||||||    
T  1764223 tgagaaatgatatttgaacaatcattttttacaacttctgtgacaactt 1764271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 311
Target Start/End: Complemental strand, 3167376 - 3167328
Alignment:
Q  263 atgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaata 311  Q
    ||||||||||||||| ||||||| |||||  |||||||||||| |||||    
T  3167376 atgaaagaaaaaattgttcaaaaattataataaaatagttgtataaata 3167328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 188
Target Start/End: Complemental strand, 5721889 - 5721841
Alignment:
Q  140 tgagtaatgatatttgaacaattactttttacaacttttgagacaactt 188  Q
    |||| |||||||||||||||| || ||||||||| ||||| ||||||||    
T  5721889 tgagaaatgatatttgaacaactattttttacaatttttgtgacaactt 5721841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 188
Target Start/End: Original strand, 15479468 - 15479516
Alignment:
Q  140 tgagtaatgatatttgaacaattactttttacaacttttgagacaactt 188  Q
    |||| ||||||||||||||||| | ||||||||||||||  ||||||||    
T  15479468 tgagaaatgatatttgaacaatcattttttacaacttttatgacaactt 15479516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 319
Target Start/End: Original strand, 18729279 - 18729359
Alignment:
Q  239 agagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    |||||||||||| ||||  ||||||||||||| ||  || | ||||| || || |||||| ||||||||||||| ||||||    
T  18729279 agagaataagaagataatgtgagtatgaaagagaaggttgtacaaaagttgtacaaaaatggttgtacaaatatcatttct 18729359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 188
Target Start/End: Complemental strand, 28306204 - 28306156
Alignment:
Q  140 tgagtaatgatatttgaacaattactttttacaacttttgagacaactt 188  Q
    |||| ||||||||||||||||  | ||||||||||||||| ||||||||    
T  28306204 tgagaaatgatatttgaacaaccattttttacaacttttgtgacaactt 28306156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 319
Target Start/End: Original strand, 34693206 - 34693286
Alignment:
Q  239 agagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    |||||||||||| ||||  ||||||||| ||| || ||| | ||||| ||||| ||||||  |||||||||||| ||||||    
T  34693206 agagaataagaagataatgtgagtatgagagagaagattgtacaaaaattatacaaaaatgattgtacaaatatcatttct 34693286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 139 - 319
Target Start/End: Original strand, 29577322 - 29577506
Alignment:
Q  139 ttgagtaatgatatttgaacaattactttt-tacaacttttgagacaac-ttgttatactctcttgttattggttagaaacaat--agagagaaaagttt 234  Q
    ||||||||| |||||||||||  ||||||| ||||| ||||| |||||| ||||| | ||||||| | |||||| | |||||||  |||||||||| |      
T  29577322 ttgagtaattatatttgaacatctacttttgtacaatttttgggacaaccttgttgttctctcttttcattggtcaaaaacaatggagagagaaaaatga 29577421  T
Q  235 agaaagagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    ||| |||||||||||| ||||  ||||||||| | | ||| || | ||||| || || |||||||||||||||||||| ||||||    
T  29577422 agagagagaataagaagataatgtgagtatgagaaagaaagttgtacaaaaattgtacaaaaatagttgtacaaatatcatttct 29577506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 319
Target Start/End: Complemental strand, 29863730 - 29863552
Alignment:
Q  145 aatgatatttgaacaattactttt-tacaacttttgagacaac-ttgttatactctcttgttattggttagaaacaat--agagagaaaagtttagaaag 240  Q
    ||||||||||||||||||| |||  |||||||||||||||||| |||||   ||| ||| |||||||||| ||| |||  |||||||| |  | ||| ||    
T  29863730 aatgatatttgaacaattattttggtacaacttttgagacaacattgttgctctcccttcttattggttaaaaataatggagagagaataaataagagag 29863631  T
Q  241 agaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    ||||||| || ||||  | ||||||||||| ||| || | ||||| |||||  ||||| ||||||||||||| ||||||    
T  29863630 agaataaaaatataatgtaagtatgaaagagaaagttgtacaaaagttataccaaaatggttgtacaaatatcatttct 29863552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 169 - 319
Target Start/End: Original strand, 4949151 - 4949304
Alignment:
Q  169 tacaacttttgagacaactt-gttatactctcttgttattggttagaaacaataga--gagaaaagtttagaaagagaataagaacataacttgagtatg 265  Q
    |||||||||||||||||||| ||| | || |||| | |||||||| ||||||||||  |||||||    ||| ||||||||| |||||||  ||||||||    
T  4949151 tacaacttttgagacaactttgttgttctttcttctcattggttaaaaacaatagaaagagaaaaaggaagagagagaataaaaacataatgtgagtatg 4949250  T
Q  266 aaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    | ||| ||| ||||  |||| || ||  ||||||||||||||||||| ||||||    
T  4949251 agagataaagttatagaaaagttgtaccaaaatagttgtacaaatatcatttct 4949304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 230
Target Start/End: Complemental strand, 8487818 - 8487727
Alignment:
Q  141 gagtaatgatatttgaacaattacttt-ttacaacttttgagacaa-cttgttatactctcttgttattggttagaaacaatagagagaaaa 230  Q
    ||||||||||||||||||||||  |||  ||||||||||||||||| |||||| | ||||||| |||||||| | ||| ||| |||||||||    
T  8487818 gagtaatgatatttgaacaatttttttgctacaacttttgagacaaccttgttgtgctctctttttattggtcaaaaataatggagagaaaa 8487727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 319
Target Start/End: Original strand, 54803255 - 54803398
Alignment:
Q  177 ttgagacaactt-gttatactctcttgttattggttagaaacaatagagagaaaagtttagaaagagaataagaacataacttgagtatgaaagaaaaaa 275  Q
    |||||||||||| ||| | ||||||| | |||||| | ||| ||| |||||||||   |||| |||||||||||||||||  ||||||||| ||| |||     
T  54803255 ttgagacaactttgttgttctctcttttcattggtcaaaaaaaatggagagaaaaaggtagagagagaataagaacataatgtgagtatgagagagaaag 54803354  T
Q  276 ttattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    || | ||||| ||  |  ||||||||||||||||||| ||||||    
T  54803355 ttgtacaaaaattgcaccaaaatagttgtacaaatatcatttct 54803398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 319
Target Start/End: Original strand, 48791548 - 48791667
Alignment:
Q  198 tcttgttattggttagaaacaatagagagaaaagtttagaaagagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaa 297  Q
    ||||||||||||| | |||||| ||||| ||| |   ||| ||||||||| |||||||  ||||||||| || |||| || |  |||| ||||| |||||    
T  48791548 tcttgttattggtcaaaaacaagagagaaaaagga--agagagagaataataacataatgtgagtatgagagtaaaagttgtctaaaaattatacaaaaa 48791645  T
Q  298 tagttgtacaaatataatttct 319  Q
    ||||||||||||||| ||||||    
T  48791646 tagttgtacaaatatcatttct 48791667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 319
Target Start/End: Complemental strand, 22894053 - 22893870
Alignment:
Q  139 ttgagtaatgatatttgaacaattactttt-tacaacttttgagacaa-cttgttatactctcttgttattggttagaaacaat--agagagaaaagttt 234  Q
    |||||||||||||||||||||| |  |||  ||||||||||| ||||| |||||| | ||||||| |||||||| | |||||||  ||||||| ||        
T  22894053 ttgagtaatgatatttgaacaacttttttgctacaacttttgggacaatcttgttgtgctctctttttattggtcaaaaacaatggagagagacaaagaa 22893954  T
Q  235 agaaagagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    ||| |||||||||||| ||||  ||||||||||||| ||| ||  | |||| || || ||||||  |||||||||||| ||||||    
T  22893953 agagagagaataagaagataatgtgagtatgaaagagaaagtt-gtaaaaaattgtacaaaaatgattgtacaaatatcatttct 22893870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 319
Target Start/End: Complemental strand, 22945721 - 22945538
Alignment:
Q  139 ttgagtaatgatatttgaacaattactttt-tacaacttttgagacaa-cttgttatactctcttgttattggttagaaacaat--agagagaaaagttt 234  Q
    |||||||||||||||||||||| |  |||  ||||||||||| ||||| |||||| | ||||||| |||||||| | |||||||  ||||||| ||        
T  22945721 ttgagtaatgatatttgaacaacttttttgctacaacttttgggacaatcttgttgtgctctctttttattggtcaaaaacaatggagagagacaaagaa 22945622  T
Q  235 agaaagagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    ||| |||||||||||| ||||  ||||||||||||| ||| ||  | |||| || || ||||||  |||||||||||| ||||||    
T  22945621 agagagagaataagaagataatgtgagtatgaaagagaaagtt-gtaaaaaattgtacaaaaatgattgtacaaatatcatttct 22945538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 195 - 317
Target Start/End: Original strand, 34114061 - 34114185
Alignment:
Q  195 ctctcttgttattggttagaaacaata--gagagaaaagtttagaaagagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatat 292  Q
    ||||||| ||||||||   ||||||||  ||||||||| |  ||| ||||||| |||| ||||| ||||||||| ||||||| || |  |||| |||||     
T  34114061 ctctcttcttattggtccaaaacaatatggagagaaaaatgaagagagagaatgagaatataacgtgagtatgagagaaaaagttgtcaaaaagttataa 34114160  T
Q  293 aaaaatagttgtacaaatataattt 317  Q
     ||||||||||||||||||| ||||    
T  34114161 taaaatagttgtacaaatatcattt 34114185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 188
Target Start/End: Original strand, 46634098 - 46634147
Alignment:
Q  139 ttgagtaatgatatttgaacaattactttttacaacttttgagacaactt 188  Q
    ||||| ||||||||||||||||| | ||||||||||||||| ||||||||    
T  46634098 ttgagaaatgatatttgaacaatcattttttacaacttttgtgacaactt 46634147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 319
Target Start/End: Complemental strand, 32901465 - 32901330
Alignment:
Q  186 cttgttatactctcttgttattggttagaaacaat--agagagaaaagtttagaaagagaataagaacataacttgagtatgaaagaaaaaattattcaa 283  Q
    |||||| | ||||||| |||||||| | |||||||  ||||||||||  | ||| ||| ||||||||  | |  ||||||||||||| ||| || | |||    
T  32901465 cttgtttttctctctttttattggtcaaaaacaatggagagagaaaaagtaagagagataataagaatgtcatgtgagtatgaaagagaaagttgtgcaa 32901366  T
Q  284 aatttatataaaaatagttgtacaaatataatttct 319  Q
    || ||||  |||||||||||||||||||| ||||||    
T  32901365 aaattatcaaaaaatagttgtacaaatatcatttct 32901330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 227
Target Start/End: Original strand, 43307256 - 43307340
Alignment:
Q  144 taatgatatttgaacaattactttttacaacttttgagacaac-ttgttatactctcttgttattggttagaaacaatagagaga 227  Q
    |||| |||||||||||| |  ||||||||| ||||| || ||| ||||| | ||||||| |||||||||| ||||||||||||||    
T  43307256 taattatatttgaacaacttttttttacaatttttgggataaccttgttgtgctctctttttattggttaaaaacaatagagaga 43307340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 188
Target Start/End: Complemental strand, 10250582 - 10250539
Alignment:
Q  145 aatgatatttgaacaattactttttacaacttttgagacaactt 188  Q
    |||||||||||||||| || ||||||||||||||| ||||||||    
T  10250582 aatgatatttgaacaactattttttacaacttttgtgacaactt 10250539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 188
Target Start/End: Complemental strand, 26725036 - 26724993
Alignment:
Q  145 aatgatatttgaacaattactttttacaacttttgagacaactt 188  Q
    ||||||||||||||||||| |||||| |||||||| ||||||||    
T  26725036 aatgatatttgaacaattattttttataacttttgtgacaactt 26724993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 195 - 319
Target Start/End: Original strand, 36947036 - 36947162
Alignment:
Q  195 ctctcttgttattggttagaaacaatagagaga--aaagtttagaaagagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatat 292  Q
    ||||||| |||||| | | ||||||||||||||  ||| | |||| ||||||||| |||||||  || |||||| ||| ||| |||| ||||| |  ||     
T  36947036 ctctctttttattgatcaaaaacaatagagagagaaaaatgtagagagagaataaaaacataatgtgggtatgagagagaaagttatacaaaaatattac 36947135  T
Q  293 aaaaatagttgtacaaatataatttct 319  Q
     ||||||||||||||||||| ||||||    
T  36947136 caaaatagttgtacaaatatcatttct 36947162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 141 - 280
Target Start/End: Original strand, 42915108 - 42915250
Alignment:
Q  141 gagtaatgatatttgaacaattactttttacaacttttgagacaactt-gttatactctcttgttattggttagaaacaatag--agagaaaagtttaga 237  Q
    ||||| |||||||||||||| || ||  ||||||||||| ||||||||  || | ||||||| | |||||||| |||||||||  ||||||||    |||    
T  42915108 gagtagtgatatttgaacaactatttgatacaacttttgtgacaacttcttttttctctcttttcattggttaaaaacaatagaaagagaaaaaggaaga 42915207  T
Q  238 aagagaataagaacataacttgagtatgaaagaaaaaattatt 280  Q
     |||||||||||  ||||| ||||||||| ||| ||| |||||    
T  42915208 gagagaataagagtataacgtgagtatgagagagaaatttatt 42915250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 139 - 277
Target Start/End: Complemental strand, 45678448 - 45678306
Alignment:
Q  139 ttgagtaatgatatttgaacaattacttt-ttacaacttttgagacaa-cttgttatactctcttgttattggttagaaacaat--agagagaaaagttt 234  Q
    |||||||||||||||||||||| || |||  |||||||||||  |||| |||||| | ||||||| |||||||| | |||||||  ||||||||||        
T  45678448 ttgagtaatgatatttgaacaactattttggtacaacttttggtacaaccttgttgttctctctttttattggtcaaaaacaatggagagagaaaaagga 45678349  T
Q  235 agaaagagaataagaacataacttgagtatgaaagaaaaaatt 277  Q
    ||| |||||||||||| ||||  || |||||| ||| ||||||    
T  45678348 agagagagaataagaagataatgtgggtatgagagataaaatt 45678306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 319
Target Start/End: Original strand, 1987630 - 1987783
Alignment:
Q  169 tacaacttttgagacaactt-gttatactctcttgttattggttagaaacaat--agagagaaaagtttagaaagagaataagaacataacttgagtatg 265  Q
    |||||| ||||||||||||| ||| | ||||||| | |||||| | |||||||  ||||||||||   |||| ||||||||| |||||||  ||||| ||    
T  1987630 tacaacctttgagacaactttgttgttctctcttttcattggtcaaaaacaatggagagagaaaaaggtagagagagaataaaaacataatgtgagtgtg 1987729  T
Q  266 aaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    | ||| ||| || | ||||| || ||  ||||| ||||||||||||| ||||||    
T  1987730 agagagaaagttgtacaaaaattgtactaaaatggttgtacaaatatcatttct 1987783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 317
Target Start/End: Original strand, 2788558 - 2788636
Alignment:
Q  239 agagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataattt 317  Q
    |||||||||||||| ||| | ||||||||||| ||||| ||| |||| |||||  |||||  |||||||||||| ||||    
T  2788558 agagaataagaacacaacattagtatgaaagagaaaatgatttaaaaattatactaaaatgattgtacaaatatcattt 2788636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 313
Target Start/End: Complemental strand, 17805533 - 17805459
Alignment:
Q  239 agagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatata 313  Q
    |||||||||||| ||||  ||||||||| ||| |||||| |  |||| ||||  |||||||||||||||||||||    
T  17805533 agagaataagaaaataatgtgagtatgagagagaaaattgtcaaaaaattattaaaaaatagttgtacaaatata 17805459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 319
Target Start/End: Original strand, 31995928 - 31995986
Alignment:
Q  262 tatgaaagaaaaaattatt-caaaatttatataaaaatagttgtacaaatataatttct 319  Q
    ||||||||| ||||||||  ||||||||||  |||||||||||||||||||| ||||||    
T  31995928 tatgaaagataaaattatcacaaaatttatcaaaaaatagttgtacaaatatcatttct 31995986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 319
Target Start/End: Original strand, 53781754 - 53781906
Alignment:
Q  169 tacaacttttgagacaac-ttgttatactctcttgttattggttagaaacaat--agagagaaaagtttagaaagagaataagaacataacttgagtatg 265  Q
    ||||||||||| |||||| ||||||| ||||||| | |||||| | |||||||  ||||||||||    ||| ||||| ||| || ||||  ||||||||    
T  53781754 tacaacttttgggacaaccttgttatgctctcttttcattggtcaaaaacaatggagagagaaaaaagaagagagagactaaaaagataatgtgagtatg 53781853  T
Q  266 aaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    ||||| |||||| |  |||| || ||  ||||||||||||||||||| ||||||    
T  53781854 aaagagaaaattgtataaaagttgta-caaaatagttgtacaaatatcatttct 53781906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 37380215 - 37380268
Alignment:
Q  140 tgagtaatgatatttgaacaatta-ctttttacaacttttgagacaacttgtta 192  Q
    ||||||||||||||||||||||||  ||| |||||||||||| |||| ||||||    
T  37380215 tgagtaatgatatttgaacaattatatttgtacaacttttgaaacaatttgtta 37380268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 188
Target Start/End: Original strand, 37997254 - 37997303
Alignment:
Q  139 ttgagtaatgatatttgaacaattactttttacaacttttgagacaactt 188  Q
    ||||| ||||||||||||||||  | ||||||||||||||| ||||||||    
T  37997254 ttgagaaatgatatttgaacaaccattttttacaacttttgtgacaactt 37997303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 188
Target Start/End: Original strand, 5622457 - 5622505
Alignment:
Q  140 tgagtaatgatatttgaacaattactttttacaacttttgagacaactt 188  Q
    |||| ||||||||||||||||  | ||||||||||||||| ||||||||    
T  5622457 tgagaaatgatatttgaacaaccattttttacaacttttgtgacaactt 5622505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 193
Target Start/End: Original strand, 27964991 - 27965039
Alignment:
Q  145 aatgatatttgaacaattactttttacaacttttgagacaacttgttat 193  Q
    |||||||||||||||| || ||||||| ||||||| |||||||| ||||    
T  27964991 aatgatatttgaacaactattttttacgacttttgtgacaactttttat 27965039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 317
Target Start/End: Original strand, 30250288 - 30250368
Alignment:
Q  237 aaagagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataattt 317  Q
    ||||||||||| |||||||  ||||||||| ||||||| || | ||| | || ||  ||||||||||||||||||| ||||    
T  30250288 aaagagaataaaaacataatgtgagtatgagagaaaaagttgtacaatagttttaccaaaatagttgtacaaatatcattt 30250368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 319
Target Start/End: Complemental strand, 39449253 - 39449174
Alignment:
Q  239 agagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    ||||||||||||||| |  ||||||||| ||||||||||  |||||| ||||   |||||||||||| |||||| ||||||    
T  39449253 agagaataagaacatgatgtgagtatgagagaaaaaatt-gtcaaaagttatcacaaaatagttgtataaatatcatttct 39449174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 311
Target Start/End: Original strand, 48650246 - 48650318
Alignment:
Q  239 agagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaata 311  Q
    |||||||||||| ||||  ||||||||| ||| ||| || | ||||| || || |||||||||||||||||||    
T  48650246 agagaataagaagataatatgagtatgagagagaaagttgtacaaaagttttacaaaaatagttgtacaaata 48650318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 139 - 319
Target Start/End: Complemental strand, 34208452 - 34208268
Alignment:
Q  139 ttgagtaatgatatttgaacaattactttt-tacaacttttgagacaactt-gttatactctcttgttattggttagaaacaatagagaga--aaagttt 234  Q
    ||||||| ||||||||  ||||||| |||  ||||| |||||||||||||| ||| | ||||||| | |||| ||| ||||||||||||||  ||| |      
T  34208452 ttgagtagtgatattttgacaattattttaatacaatttttgagacaactttgtttttctctcttctcattgattaaaaacaatagagagagaaaaatga 34208353  T
Q  235 agaaagagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    ||| ||||||||| |||||||  ||| ||||||||| ||||||||  |||| || ||| |||||| |||||||||||| ||||||    
T  34208352 agagagagaataaaaacataatatgaatatgaaagagaaaattatataaaagttgtatcaaaataattgtacaaatatcatttct 34208268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 169 - 319
Target Start/End: Original strand, 9158953 - 9159106
Alignment:
Q  169 tacaacttttgagacaac-ttgttatactctcttgttattggttagaaacaat--agagagaaaagtttagaaagagaataagaacataacttgagtatg 265  Q
    ||||||||||| |||||| ||||| | ||||||| | |||||| | |||||||  ||||||||||    ||| ||| |||||||| ||||  ||||||||    
T  9158953 tacaacttttgggacaaccttgttgtgctctcttttcattggtcaaaaacaatgaagagagaaaaagaaagacagaaaataagaagataatgtgagtatg 9159052  T
Q  266 aaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    ||||| |||||| | ||||| || || |||||| ||||||||||||| ||||||    
T  9159053 aaagagaaaattgtacaaaaattgtacaaaaatggttgtacaaatatcatttct 9159106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 176 - 318
Target Start/End: Complemental strand, 38471789 - 38471644
Alignment:
Q  176 tttgagacaactt-gttatactctcttgttattggttagaaacaatagagag--aaaagtttagaaagagaataagaacataacttgagtatgaaagaaa 272  Q
    ||||||||||||| ||| | ||||||| | |||||||| |||||||||||||  |||| |  ||| ||||||||| |||||||  ||||||||| ||| |    
T  38471789 tttgagacaactttgttgttctctcttctcattggttaaaaacaatagagagggaaaaatgaagagagagaataaaaacataatgtgagtatgagagaga 38471690  T
Q  273 aaattattcaaaatttatataaaaatagttgtacaaatataatttc 318  Q
    ||||| | ||||| || ||  ||||| ||||||||||||| |||||    
T  38471689 aaattgtacaaaagttgtaccaaaatggttgtacaaatatcatttc 38471644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 140 - 319
Target Start/End: Complemental strand, 33972067 - 33971884
Alignment:
Q  140 tgagtaatgatatttgaacaattacttt-ttacaacttttgagacaa-cttgttatactctcttgttattggttagaaacaat--agagagaaaagttta 235  Q
    ||||||||||||||||||||| || |||  ||||| ||||||||||| |||||| | ||||||| | |||||||| |||||||  ||||||||||    |    
T  33972067 tgagtaatgatatttgaacaactattttggtacaatttttgagacaaccttgttgttctctcttctcattggttaaaaacaatggagagagaaaaagaaa 33971968  T
Q  236 gaaagagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    || | | |||||||| ||||  ||||||||| ||| |||||| | ||||| || || || ||| |||||| |||||| ||||||    
T  33971967 gagaaaaaataagaagataatgtgagtatgagagataaaattgtacaaaagttgtacaagaatggttgtataaatatcatttct 33971884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 312
Target Start/End: Original strand, 1261320 - 1261438
Alignment:
Q  196 tctcttgttattggttagaaacaataga--gagaaaagtttagaaagagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatata 293  Q
    |||||| | |||||||| ||||||||||  |||||||    ||| ||||||||| |||||||  ||||||||||||| ||| || | ||||| || |||     
T  1261320 tctcttctcattggttaaaaacaatagatagagaaaaaggaagagagagaataaaaacataatgtgagtatgaaagagaaagttgtacaaaaattgtatc 1261419  T
Q  294 aaaatagttgtacaaatat 312  Q
    |||||||||||||||||||    
T  1261420 aaaatagttgtacaaatat 1261438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 311
Target Start/End: Complemental strand, 9027796 - 9027622
Alignment:
Q  141 gagtaatgatatttgaacaattacttt-ttacaacttttgagacaa-cttgttatactctcttgttattggttagaaacaat--agagagaaaagtttag 236  Q
    |||||||||||||||||||| || |||  |||||||||||  |||| |||||| | ||||||| |||||||| | |||||||  ||||||||||    |     
T  9027796 gagtaatgatatttgaacaactattttggtacaacttttggtacaaccttgttgttctctcttcttattggtcaaaaacaatggagagagaaaaaagaaa 9027697  T
Q  237 aaagagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaata 311  Q
    | |||||||||||| ||||  ||||||| | ||| ||| || | ||||| || ||||||||| ||||||||||||    
T  9027696 agagagaataagaagataatgtgagtatcagagataaagttgtacaaaagttgtataaaaatggttgtacaaata 9027622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 319
Target Start/End: Complemental strand, 29706086 - 29705904
Alignment:
Q  140 tgagtaatgatatttgaacaattactttttacaacttttgagacaacttgttata-ctctcttgttattggttagaaacaataga--gagaaaagtttag 236  Q
    |||||| |||||||||||||| || ||  ||||||||||| |||||||| || |  ||||||| | |||||| | ||||||| ||  ||||||| |  ||    
T  29706086 tgagtagtgatatttgaacaactatttgatacaacttttgtgacaacttcttttttctctcttttcattggtaaaaaacaatggatagagaaaaatgaag 29705987  T
Q  237 aaagagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    | |||||||||||  ||||  ||||||||||||| ||||||||  |||| ||||   |||||| ||||| |||||| ||||||    
T  29705986 agagagaataagagaataatgtgagtatgaaagagaaaattatcaaaaaattatcacaaaataattgtataaatatcatttct 29705904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 188
Target Start/End: Original strand, 41505495 - 41505538
Alignment:
Q  145 aatgatatttgaacaattactttttacaacttttgagacaactt 188  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||    
T  41505495 aatgatatttgaacaattattttttacaacttttgtgacaactt 41505538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 319
Target Start/End: Complemental strand, 28300412 - 28300287
Alignment:
Q  196 tctcttgttattggttagaaacaataga--gagaaaagtttagaaagagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatata 293  Q
    |||||| ||||||||   ||||||||||  ||||||| |  ||| |||||||||||| |||| |||||||| ||||||||| || |  |||| |||||      
T  28300412 tctcttcttattggtccaaaacaatagagagagaaaaatgaagagagagaataagaatataatttgagtataaaagaaaaagttgtcaaaaaattataat 28300313  T
Q  294 aaaatagttgtacaaatataatttct 319  Q
    ||||| ||||||||||||| ||||||    
T  28300312 aaaatggttgtacaaatatcatttct 28300287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 319
Target Start/End: Original strand, 21239095 - 21239148
Alignment:
Q  266 aaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    |||||||||||||||||||| ||||   ||||||||||||||||||| ||||||    
T  21239095 aaagaaaaaattattcaaaaattatcataaaatagttgtacaaatatcatttct 21239148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 319
Target Start/End: Original strand, 7351632 - 7351708
Alignment:
Q  243 aataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    |||||||| ||||  ||||||||| ||| |||||| | ||||| ||||| |||||| ||||||||||||| ||||||    
T  7351632 aataagaagataatatgagtatgagagagaaaattgtacaaaaattatacaaaaatggttgtacaaatatcatttct 7351708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 317
Target Start/End: Complemental strand, 17118496 - 17118400
Alignment:
Q  221 agagagaaaagtttagaaagagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataattt 317  Q
    |||||||||||   ||| ||||||||| || ||||  ||||||||| |||||||||| | ||||| || || |||||| ||||||||||||| ||||    
T  17118496 agagagaaaaggaaagagagagaataataagataatgtgagtatgagagaaaaaattgtacaaaagttgtacaaaaatggttgtacaaatatcattt 17118400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 227
Target Start/End: Original strand, 43149227 - 43149319
Alignment:
Q  137 ttttgagtaatgatatttgaacaattacttt-ttacaacttttgagacaa-cttgttatactctcttgttattggttagaaacaatagagaga 227  Q
    |||||||||||||||||||||||| || |||  |||||||||||  |||| |||||| | ||||||| |||||||| | ||||||| ||||||    
T  43149227 ttttgagtaatgatatttgaacaactattttggtacaacttttggtacaaccttgttgttctctcttcttattggtcaaaaacaatggagaga 43149319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 319
Target Start/End: Original strand, 45517647 - 45517727
Alignment:
Q  239 agagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    |||||||||||| ||||  ||| ||||||| | ||| |||| ||||| ||||| |||||| ||||||||||||| ||||||    
T  45517647 agagaataagaagataatgtgaatatgaaaaagaaagttatacaaaagttatacaaaaatggttgtacaaatatcatttct 45517727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 260 - 319
Target Start/End: Original strand, 10347484 - 10347543
Alignment:
Q  260 agtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    ||||||| ||| ||| |||||||||| |||||| ||||| ||||||||||||| ||||||    
T  10347484 agtatgagagagaaatttattcaaaagttatattaaaatggttgtacaaatatcatttct 10347543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 16295618 - 16295559
Alignment:
Q  169 tacaacttttgagacaactt-gttatactctcttgttattggttagaaacaatagagaga 227  Q
    |||||||||||||||||||| ||| | ||||||| |||||||| | ||||||||||||||    
T  16295618 tacaacttttgagacaactttgttgttctctctttttattggtcaaaaacaatagagaga 16295559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 319
Target Start/End: Complemental strand, 30664627 - 30664504
Alignment:
Q  196 tctcttgttattggttagaaacaatagagagaaaagtttagaaagagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaa 295  Q
    |||||| |||||||| | |||||||||||||||||    ||| ||| |||||||| ||||  ||||||||| ||| ||| || | ||||| || || |||    
T  30664627 tctctttttattggtcaaaaacaatagagagaaaaaggaagagagaaaataagaagataatgtgagtatgagagagaaagttgtacaaaagttgtacaaa 30664528  T
Q  296 aatagttgtacaaatataatttct 319  Q
    |||  |||||||||||| ||||||    
T  30664527 aatgattgtacaaatatcatttct 30664504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 319
Target Start/End: Original strand, 34145484 - 34145608
Alignment:
Q  196 tctcttgttattggttagaaacaatagagagaaa--agtttagaaagagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatata 293  Q
    |||||| |||||||| | ||| ||||||||||||  | | |||| | | ||||| |||||||| ||||||||||||| |||  |||  |||||| |||      
T  34145484 tctctttttattggtcaaaaataatagagagaaacaaatgtagagataaaataaaaacataacgtgagtatgaaagagaaagatataaaaaatt-atact 34145582  T
Q  294 aaaatagttgtacaaatataatttct 319  Q
    ||||||||||||||||||| ||||||    
T  34145583 aaaatagttgtacaaatatcatttct 34145608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 319
Target Start/End: Complemental strand, 36799477 - 36799399
Alignment:
Q  241 agaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    |||||||||| ||||  ||||||||| | | |||||| || |||| ||||  |||||||||||||||||||| ||||||    
T  36799477 agaataagaatataatgtgagtatgagaaataaaattgtttaaaagttatcaaaaaatagttgtacaaatatcatttct 36799399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 188
Target Start/End: Original strand, 42477959 - 42478008
Alignment:
Q  139 ttgagtaatgatatttgaacaattactttttacaacttttgagacaactt 188  Q
    ||||| ||||||||||||||||||| |||||| || ||||| ||||||||    
T  42477959 ttgagaaatgatatttgaacaattattttttataatttttgtgacaactt 42478008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 319
Target Start/End: Complemental strand, 47276312 - 47276227
Alignment:
Q  234 tagaaagagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    |||| ||||| ||| || ||||| ||||||||| ||| |||||| |  ||||||   | |||||||||||||||||||||||||||    
T  47276312 tagagagagagtaaaaatataacgtgagtatgagagagaaaattgtctaaaattgtcaaaaaaatagttgtacaaatataatttct 47276227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 319
Target Start/End: Complemental strand, 1295413 - 1295333
Alignment:
Q  239 agagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    ||||| |||||| ||||  ||||||||| ||||||| || | ||||| ||||   ||||||||||||||||||| ||||||    
T  1295413 agagagtaagaatataatgtgagtatgagagaaaaagttgtccaaaagttatcacaaaatagttgtacaaatatcatttct 1295333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 319
Target Start/End: Complemental strand, 1834587 - 1834507
Alignment:
Q  239 agagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    |||||||||||| ||||  ||||||||| ||| ||| || ||||||| || ||  ||||| ||||||||||||| ||||||    
T  1834587 agagaataagaatataatgtgagtatgagagagaaagttgttcaaaaattgtagcaaaatggttgtacaaatattatttct 1834507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 20548057 - 20548017
Alignment:
Q  145 aatgatatttgaacaattactttttacaacttttgagacaa 185  Q
    ||||||||||||||||| | ||||||||||||||| |||||    
T  20548057 aatgatatttgaacaatcagtttttacaacttttgtgacaa 20548017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 188
Target Start/End: Original strand, 26014811 - 26014859
Alignment:
Q  140 tgagtaatgatatttgaacaattactttttacaacttttgagacaactt 188  Q
    |||| ||||||||||||||||  | ||||||||||||||| ||||||||    
T  26014811 tgagaaatgatatttgaacaaccattttttacaacttttgtgacaactt 26014859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 319
Target Start/End: Complemental strand, 32151969 - 32151889
Alignment:
Q  239 agagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    |||||||||||| ||||  ||||||||| ||| ||  |||| ||||| ||||| ||||||| ||||||| |||| ||||||    
T  32151969 agagaataagaagataatatgagtatgagagagaaggttatacaaaaattatacaaaaataattgtacacatatcatttct 32151889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 227
Target Start/End: Complemental strand, 35368794 - 35368706
Alignment:
Q  141 gagtaatgatatttgaacaa-ttactttttacaacttttgagacaa-cttgttatactctcttgttattggttagaaacaatagagaga 227  Q
    |||||||||||||||||||| ||  ||  ||||||||||| ||||| |||||| | ||||||| | |||||| | ||||||||||||||    
T  35368794 gagtaatgatatttgaacaacttgtttgctacaacttttgggacaatcttgttgtgctctcttttcattggtaaaaaacaatagagaga 35368706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 319
Target Start/End: Complemental strand, 48205126 - 48205046
Alignment:
Q  239 agagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    ||||||||| || ||||  ||||||||| ||| |||||| | ||||| ||||| ||||||  |||||||||||| ||||||    
T  48205126 agagaataaaaagataatgtgagtatgagagagaaaattgtacaaaaattatacaaaaatgattgtacaaatatcatttct 48205046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 318
Target Start/End: Complemental strand, 52381240 - 52381184
Alignment:
Q  262 tatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttc 318  Q
    |||||||||||||||| | ||||| |||||  ||||| ||||||||||||| |||||    
T  52381240 tatgaaagaaaaaattctacaaaagttataccaaaatggttgtacaaatatcatttc 52381184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 141 - 319
Target Start/End: Original strand, 21649058 - 21649238
Alignment:
Q  141 gagtaatgatatttgaacaattactttt-tacaacttttgagacaac-ttgttatactctcttgttattggttagaaacaatagagagaaaagtttagaa 238  Q
    |||||||||||||||||||| |  |||  ||||||||||| |||||| ||||| | ||||||| |||||||| | ||| ||| |||||||||    |||     
T  21649058 gagtaatgatatttgaacaacttttttgctacaacttttgggacaaccttgttgtgctctctttttattggtcaaaaataatggagagaaaaaggaagag 21649157  T
Q  239 agagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    |||||||| ||| ||||  ||||||||||||| ||| || | ||||| || || |||||| ||||||||||||| ||||||    
T  21649158 agagaataggaagataatgtgagtatgaaagagaaagttgtacaaaagttgtacaaaaatggttgtacaaatatcatttct 21649238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 312
Target Start/End: Original strand, 32234442 - 32234515
Alignment:
Q  239 agagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatat 312  Q
    |||||||||||| ||||  ||| ||||||||| |||||| |  |||| ||||||||||||||||||||||||||    
T  32234442 agagaataagaagataatgtgaatatgaaagagaaaattgtataaaaattatataaaaatagttgtacaaatat 32234515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 227
Target Start/End: Complemental strand, 42651100 - 42651015
Alignment:
Q  144 taatgatatttgaacaattactttt-tacaacttttgagacaac-ttgttatactctcttgttattggttagaaacaatagagaga 227  Q
    ||||||||||||||||| || |||  |||||||||||||||||| ||||| | ||||||| | |||||||| ||||||||||||||    
T  42651100 taatgatatttgaacaactattttggtacaacttttgagacaaccttgttgttctctcttctcattggttaaaaacaatagagaga 42651015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 319
Target Start/End: Complemental strand, 18550162 - 18549980
Alignment:
Q  141 gagtaatgatatttgaacaattactttt-tacaacttttgagacaac-ttgttatactctcttgttattggttagaaacaatagagaga--aaagtttag 236  Q
    |||||||||||||||||||| || |||  ||||||||||| |||||| ||||| |  |||||| |||||| | | ||||||||||||||  |||    ||    
T  18550162 gagtaatgatatttgaacaactattttggtacaacttttgggacaaccttgttgtgttctcttcttattgatcaaaaacaatagagagagaaaaaggaag 18550063  T
Q  237 aaagagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    | |||||||||||| ||||  ||||||||| ||| ||  || | ||||| ||||| ||||||  |||||||||||| ||||||    
T  18550062 agagagaataagaagataatatgagtatgagagagaatgttgtacaaaagttatacaaaaatgattgtacaaatatcatttct 18549980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 319
Target Start/End: Original strand, 22203107 - 22203285
Alignment:
Q  145 aatgatatttgaacaattactttt-tacaacttttgagacaac-ttgttatactctcttgttattggttagaaacaataga--gagaaaagtttagaaag 240  Q
    |||||||||||||||| |  |||  ||||||||||| |||||| ||||| | ||||||| | |||||| | ||||||| ||  |||||||    ||| ||    
T  22203107 aatgatatttgaacaacttttttgctacaacttttgggacaaccttgttgtgctctcttttgattggtcaaaaacaatggaaagagaaaaaggaagagag 22203206  T
Q  241 agaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    |||||||||| ||||  ||||||||| |||||| ||| | ||||| || || |||||| ||||||||||||| ||||||    
T  22203207 agaataagaagataatatgagtatgagagaaaatattgtacaaaagttgtacaaaaatggttgtacaaatatcatttct 22203285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 319
Target Start/End: Original strand, 22836027 - 22836209
Alignment:
Q  141 gagtaatgatatttgaacaattactttt-tacaacttttgagacaac-ttgttatactctcttgttattggttagaaacaat--agagagaaaagtttag 236  Q
    |||||||||||||||||||| |  |||  ||||| ||||| || ||| ||||| | ||||||| | |||||| | |||||||  ||||||||||    ||    
T  22836027 gagtaatgatatttgaacaacttttttgctacaatttttgggataaccttgttgtgctctcttttcattggtcaaaaacaatggagagagaaaaaggaag 22836126  T
Q  237 aaagagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    | |||||||||||| ||||  ||||||||| ||| ||| || | |||||||| ||| ||||| ||||||||||||| ||||||    
T  22836127 agagagaataagaagataatgtgagtatgagagagaaagttgtacaaaatttgtatgaaaatggttgtacaaatatcatttct 22836209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 319
Target Start/End: Complemental strand, 27300500 - 27300347
Alignment:
Q  169 tacaacttttgagacaa-cttgttatactctcttgttattggttagaaacaatagagaga--aaagtttagaaagagaataagaacataacttgagtatg 265  Q
    ||||||||||| ||||| |||||| || |||||| |||||||| | ||||||||||||||  |||    ||| |||||||||||| ||||  ||| ||||    
T  27300500 tacaacttttgggacaatcttgttgtattctcttcttattggtcaaaaacaatagagagagaaaaaggaagagagagaataagaagataatgtgaatatg 27300401  T
Q  266 aaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    | ||| ||| || | ||||| || || |||||| ||||||||||||| ||||||    
T  27300400 agagagaaagttgtacaaaagttgtacaaaaatggttgtacaaatatcatttct 27300347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 319
Target Start/End: Original strand, 37784346 - 37784444
Alignment:
Q  221 agagagaaaagtttagaaagagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    ||||||||||  | ||| ||||||||| |||||||  ||||||||| ||| |||||| | ||||| |||||  ||||| ||||||||||||| ||||||    
T  37784346 agagagaaaacgtaagagagagaataaaaacataatatgagtatgagagagaaaattgtacaaaagttataccaaaatggttgtacaaatatcatttct 37784444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 319
Target Start/End: Original strand, 10591867 - 10591943
Alignment:
Q  243 aataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    |||||||| ||||  ||| ||| ||||| ||| || | ||||| |||||||||||||||||||||||||| ||||||    
T  10591867 aataagaagataatgtgaatataaaagagaaagttgtacaaaagttatataaaaatagttgtacaaatatcatttct 10591943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 176 - 319
Target Start/End: Original strand, 5742581 - 5742727
Alignment:
Q  176 tttgagacaactt-gttatactctcttgttattggttagaaacaat--agagagaaaagtttagaaagagaataagaacataacttgagtatgaaagaaa 272  Q
    ||||||||||||| ||| | ||||||| | |||||| | |||||||  ||||||||||   |||| ||||||||| |||||||  ||||||||| ||| |    
T  5742581 tttgagacaactttgttgttctctcttctcattggtcaaaaacaatggagagagaaaaagatagagagagaataaaaacataatgtgagtatgagagata 5742680  T
Q  273 aaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    || || | ||||| || ||  ||||| ||||||||||||| ||||||    
T  5742681 aagttgtacaaaagttgtaccaaaatggttgtacaaatatcatttct 5742727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 140 - 255
Target Start/End: Complemental strand, 13924193 - 13924076
Alignment:
Q  140 tgagtaatgatatttgaacaattactttt--tacaacttttgagacaa-cttgttatactctcttgttattggttagaaacaatagagagaaaagtttag 236  Q
    |||||||| |||||||||||| | |||||  ||||||||||| ||||| |||||| | ||||||| | |||||||| || ||||||||||||||    ||    
T  13924193 tgagtaataatatttgaacaact-cttttggtacaacttttgtgacaatcttgttgtcctctcttctcattggttaaaaccaatagagagaaaaaagaag 13924095  T
Q  237 aaagagaataagaacataa 255  Q
    | |||||||||||| ||||    
T  13924094 agagagaataagaagataa 13924076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 141 - 227
Target Start/End: Original strand, 21273599 - 21273686
Alignment:
Q  141 gagtaatgatatttgaacaattactttttacaacttttgagacaacttgt-tatactctcttgttattggttagaaacaatagagaga 227  Q
    ||||| |||||||||||||| || ||  ||||||||||| |||||||| | | | ||||||| | |||||||| ||||||||||||||    
T  21273599 gagtagtgatatttgaacaactatttcatacaacttttgtgacaacttttcttttctctcttttcattggttaaaaacaatagagaga 21273686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 138 - 177
Target Start/End: Original strand, 42768204 - 42768243
Alignment:
Q  138 tttgagtaatgatatttgaacaattactttttacaacttt 177  Q
    |||||| ||||||||||||||||||| |||||||||||||    
T  42768204 tttgagaaatgatatttgaacaattattttttacaacttt 42768243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 230
Target Start/End: Complemental strand, 7678914 - 7678824
Alignment:
Q  141 gagtaatgatatttgaacaattactttttacaacttttgagacaactt-gttatactctcttgttattggttagaaacaatagagagaaaa 230  Q
    |||||||||||||||||||| || ||  |||||||||||  |||||||  || | ||||||| | |||||||| ||||||| |||||||||    
T  7678914 gagtaatgatatttgaacaactatttgatacaacttttgtaacaacttcttttttctctcttttcattggttaaaaacaatggagagaaaa 7678824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 319
Target Start/End: Original strand, 32674149 - 32674302
Alignment:
Q  169 tacaacttttgagacaactt-gttatactctcttgttattggttagaaacaataga--gagaaaagtttagaaagagaataagaacataacttgagtatg 265  Q
    |||||| ||||||||||||| ||| |  || ||| | |||||||| ||||||||||  |||||||    ||| ||||||||| |||||||  ||||||||    
T  32674149 tacaacctttgagacaactttgttgttatcccttctcattggttaaaaacaatagaaagagaaaaaggaagatagagaataaaaacataatgtgagtatg 32674248  T
Q  266 aaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    | ||| ||| || | ||||| |||||  ||||| ||||||||||||| ||||||    
T  32674249 agagagaaagttgtacaaaagttataccaaaatggttgtacaaatatcatttct 32674302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 230
Target Start/End: Original strand, 35701760 - 35701822
Alignment:
Q  169 tacaacttttgagacaa-cttgttatactctcttgttattggttagaaacaatagagagaaaa 230  Q
    ||||||||||| ||||| ||||||||  |||||| |||||||| | |||||||||||||||||    
T  35701760 tacaacttttgggacaatcttgttatgttctcttcttattggtcaaaaacaatagagagaaaa 35701822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 312
Target Start/End: Complemental strand, 42688513 - 42688435
Alignment:
Q  234 tagaaagagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatat 312  Q
    |||| |||||||||| | ||||  ||||||||| ||| |||||||| ||||| ||||| ||||||  ||||||||||||    
T  42688513 tagagagagaataagtagataatatgagtatgagagagaaaattatacaaaagttatacaaaaatgattgtacaaatat 42688435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 188
Target Start/End: Original strand, 27325756 - 27325805
Alignment:
Q  139 ttgagtaatgatatttgaacaattactttttacaacttttgagacaactt 188  Q
    ||||| ||||||||||||||||  | ||||||||||||||| ||||||||    
T  27325756 ttgagaaatgatatttgaacaaccattttttacaacttttgtgacaactt 27325805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 188
Target Start/End: Original strand, 7271851 - 7271899
Alignment:
Q  140 tgagtaatgatatttgaacaattactttttacaacttttgagacaactt 188  Q
    |||| ||||||||||||||||| | |||| |||||||||| ||||||||    
T  7271851 tgagaaatgatatttgaacaataatttttaacaacttttgtgacaactt 7271899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 188
Target Start/End: Complemental strand, 33451638 - 33451586
Alignment:
Q  137 ttttgagtaatgatatttgaacaattacttttt-acaacttttgagacaactt 188  Q
    |||||||||| |||||||||||||| | ||||| |||||||||| ||||||||    
T  33451638 ttttgagtaacgatatttgaacaatcattttttgacaacttttgtgacaactt 33451586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 188
Target Start/End: Original strand, 43397776 - 43397828
Alignment:
Q  136 gttttgagtaatgatatttgaacaattactttttacaacttttgagacaactt 188  Q
    |||||||| ||||||||||||||||  | |||||||||||||||  |||||||    
T  43397776 gttttgagaaatgatatttgaacaaccattttttacaacttttgttacaactt 43397828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 141 - 319
Target Start/End: Original strand, 35705805 - 35705986
Alignment:
Q  141 gagtaatgatatttgaacaattactttt-tacaacttttgagacaa-cttgttatactctcttgttattggttagaaacaat--agagagaaaagtttag 236  Q
    |||||||||||||||||||| |  |||  ||||||||||| ||||| |||||| | ||||||| | |||||| | |||||||  ||||||||||    ||    
T  35705805 gagtaatgatatttgaacaacttttttgctacaacttttgggacaatcttgttgtgctctcttttcattggtcaaaaacaatggagagagaaaaaggaag 35705904  T
Q  237 aaagagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    | |||||||||||| ||||| ||||||||||||| ||| ||  | |||| ||||| |||||| ||||||||||||| ||||||    
T  35705905 agagagaataagaagataacgtgagtatgaaagagaaagtt-gtaaaaaattatacaaaaatggttgtacaaatatcatttct 35705986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 320
Target Start/End: Complemental strand, 37076838 - 37076657
Alignment:
Q  139 ttgagtaatgatatttgaacaattactttt--tacaacttttgagacaac-ttgttatactctcttgttattggttagaaacaatagagagaaaagttta 235  Q
    |||||||||| ||||||||||| | |||||  ||||| ||||| |||||| ||||||| || |||| | |||||| |  |||||| |||||||||    |    
T  37076838 ttgagtaatgttatttgaacaact-cttttagtacaatttttgtgacaaccttgttattctttcttctcattggtcaataacaatggagagaaaaaa--a 37076742  T
Q  236 gaaagagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttctt 320  Q
     ||| |||||||||| ||||  ||| ||| ||||| |||||||| ||||| ||||||||||||| |||||||||||| |||||||    
T  37076741 aaaaaagaataagaagataatgtgaatataaaagagaaaattatacaaaaattatataaaaataattgtacaaatatcatttctt 37076657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 320
Target Start/End: Complemental strand, 9384456 - 9384375
Alignment:
Q  239 agagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttctt 320  Q
    |||||||||||| ||||  ||||||||| ||| ||| || | ||||| |||| ||||||||||||||||||||| |||||||    
T  9384456 agagaataagaagataatatgagtatgagagagaaagttgtacaaaaattatgtaaaaatagttgtacaaatatcatttctt 9384375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 239 - 319
Target Start/End: Complemental strand, 12208523 - 12208443
Alignment:
Q  239 agagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    |||||||||||| ||||  ||||||||||||| ||| |||| ||||| || || |||||| ||||||||||||| ||||||    
T  12208523 agagaataagaaaataatgtgagtatgaaagagaaagttatacaaaagttgtacaaaaatggttgtacaaatatcatttct 12208443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 141 - 227
Target Start/End: Complemental strand, 35518458 - 35518370
Alignment:
Q  141 gagtaatgatatttgaacaattactttt-tacaacttttgagacaactt-gttatactctcttgttattggttagaaacaatagagaga 227  Q
    |||||||||||||||||||| || |||  ||||||||||| |||||||| ||| | ||||||| |||||||| | ||||||||||||||    
T  35518458 gagtaatgatatttgaacaactattttgatacaacttttgggacaactttgttgttctctcttcttattggtcaaaaacaatagagaga 35518370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 319
Target Start/End: Original strand, 13850104 - 13850254
Alignment:
Q  172 aacttttgagacaactt-gttatactctcttgttattggttagaaacaat--agagagaaaagtttagaaagagaataagaacataacttgagtatgaaa 268  Q
    |||||||||||||| || ||| | ||||||| | |||||| | ||| |||  |||||||||||| || ||||||||||| |||||||  ||||||||| |    
T  13850104 aacttttgagacaattttgttgttctctcttttcattggtcaaaaataatggagagagaaaagtgtaaaaagagaataaaaacataatgtgagtatgaga 13850203  T
Q  269 gaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    || ||| || | ||||| |||||| |||||  ||||| |||||| ||||||    
T  13850204 gagaaagttgtacaaaaattatatcaaaatgattgtataaatatcatttct 13850254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 141 - 230
Target Start/End: Complemental strand, 16463475 - 16463384
Alignment:
Q  141 gagtaatgatatttgaacaattactttt--tacaacttttgagacaa-cttgttatactctcttgttattggttagaaacaatagagagaaaa 230  Q
    |||||||||||||||||||| | ||| |  ||||||||||| ||||| |||||| | ||||||| |||||||| | |||||||||||||||||    
T  16463475 gagtaatgatatttgaacaact-cttatggtacaacttttgggacaatcttgttgtgctctcttcttattggtcaaaaacaatagagagaaaa 16463384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 277
Target Start/End: Original strand, 24491571 - 24491705
Alignment:
Q  147 tgatatttgaacaattactttt--tacaacttttgagacaa-cttgttatactctcttgttattggttagaaacaatag--agagaaaagtttagaaaga 241  Q
    |||||||||||||||| |||||  ||||||||||||||||| ||| || | ||||||| |||||||||| |||||||||  ||||||||    ||| |||    
T  24491571 tgatatttgaacaatt-cttttgatacaacttttgagacaatcttattgttctctcttcttattggttaaaaacaatagaaagagaaaaagaaagagaga 24491669  T
Q  242 gaataagaacataacttgagtatgaaagaaaaaatt 277  Q
    ||||||||| ||||  |||||| || ||| ||||||    
T  24491670 gaataagaagataatgtgagtacgagagagaaaatt 24491705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 3838953 - 3838913
Alignment:
Q  139 ttgagtaatgatatttgaacaattactttttacaacttttg 179  Q
    ||||| ||||||||||||||||||| |||||||||||||||    
T  3838953 ttgagaaatgatatttgaacaattattttttacaacttttg 3838913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 319
Target Start/End: Complemental strand, 19637310 - 19637230
Alignment:
Q  239 agagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    |||||||||||  ||||  ||||||||||||| ||| || | ||||| ||||| |||||| ||||||||||||| ||||||    
T  19637310 agagaataagatgataatgtgagtatgaaagagaaagttgtacaaaagttatacaaaaatggttgtacaaatatcatttct 19637230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 319
Target Start/End: Complemental strand, 19835903 - 19835823
Alignment:
Q  239 agagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    |||||||||||  ||||  ||||||||||||| ||| || | ||||| ||||| |||||| ||||||||||||| ||||||    
T  19835903 agagaataagatgataatgtgagtatgaaagagaaagttgtacaaaagttatacaaaaatggttgtacaaatatcatttct 19835823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 319
Target Start/End: Complemental strand, 27529710 - 27529530
Alignment:
Q  141 gagtaatgatatttgaacaattactttt-tacaacttttgagacaac-ttgttatactctcttgttattggttagaaacaatagagagaaaagtttagaa 238  Q
    |||||||||||||||||||| | ||||  ||||||||| | |||||| ||||| | || |||| | |||||| | ||||||| |||||||||    |||     
T  27529710 gagtaatgatatttgaacaacttctttgctacaactttcgggacaaccttgttgtgctttcttttcattggtcaaaaacaatggagagaaaaaggaagag 27529611  T
Q  239 agagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    |||||||||||| ||||  ||||||| | ||| ||| || | ||||| || || |||||| ||| ||||||||| ||||||    
T  27529610 agagaataagaagataatgtgagtataatagagaaagttgtacaaaagttgtacaaaaatggttctacaaatatcatttct 27529530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 188
Target Start/End: Original strand, 9207594 - 9207637
Alignment:
Q  145 aatgatatttgaacaattactttttacaacttttgagacaactt 188  Q
    ||||||||||||||||| | ||||||||||||||| ||||||||    
T  9207594 aatgatatttgaacaatcattttttacaacttttgtgacaactt 9207637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 188
Target Start/End: Original strand, 9990695 - 9990738
Alignment:
Q  145 aatgatatttgaacaattactttttacaacttttgagacaactt 188  Q
    |||||||||||||||| || ||||||||||||||| ||||||||    
T  9990695 aatgatatttgaacaactaatttttacaacttttgtgacaactt 9990738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 141 - 227
Target Start/End: Complemental strand, 13711243 - 13711156
Alignment:
Q  141 gagtaatgatatttgaacaattactttttacaacttttgagacaactt-gttatactctcttgttattggttagaaacaatagagaga 227  Q
    ||||| |||||||||||||| || ||| ||||||||||| ||||||||  || | ||||||| | |||||||| ||||||| ||||||    
T  13711243 gagtagtgatatttgaacaactattttgtacaacttttgtgacaacttcttttttctctcttttcattggttaaaaacaatggagaga 13711156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 265 - 320
Target Start/End: Complemental strand, 37878946 - 37878892
Alignment:
Q  265 gaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttctt 320  Q
    |||||| ||| ||||| |||||| |||||||| |||||||||||||||||||||||    
T  37878946 gaaagagaaatttattaaaaattgatataaaa-tagttgtacaaatataatttctt 37878892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 230
Target Start/End: Complemental strand, 3091923 - 3091833
Alignment:
Q  141 gagtaatgatatttgaacaattactttttacaacttttgagacaactt-gttatactctcttgttattggttagaaacaatagagagaaaa 230  Q
    ||||| ||||||||||||||||| ||  ||||||||||| ||||||||  || | ||||||| | |||||| | ||||||| |||||||||    
T  3091923 gagtagtgatatttgaacaattatttgatacaacttttgtgacaacttcttttttctctcttttcattggtcaaaaacaatggagagaaaa 3091833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 266
Target Start/End: Complemental strand, 8757727 - 8757598
Alignment:
Q  141 gagtaatgatatttgaacaattacttt-ttacaacttttgagacaa-cttgttatactctcttgttattggttagaaacaat--agagagaaaagtttag 236  Q
    |||||||||||||||||||| || |||  |||||||||||  |||| |||||| | ||||||| |||||||| | |||||||  ||||||||||    ||    
T  8757727 gagtaatgatatttgaacaactattttggtacaacttttggtacaaccttgttgttctctcttcttattggtcaaaaacaatggagagagaaaaagaaag 8757628  T
Q  237 aaagagaataagaacataacttgagtatga 266  Q
    | |||||||||||| ||||  |||||||||    
T  8757627 agagagaataagaagataatgtgagtatga 8757598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 319
Target Start/End: Complemental strand, 40721925 - 40721772
Alignment:
Q  169 tacaacttttgagacaactt-gttatactctcttgttattggttagaaacaataga--gagaaaagtttagaaagagaataagaacataacttgagtatg 265  Q
    |||||| ||||||||||||| ||| | ||||||| | |||||||| |||||||| |  ||||||| |  ||| ||||||||| |||||||  ||||||||    
T  40721925 tacaacctttgagacaactttgttgttctctcttctcattggttaaaaacaataaaaagagaaaaatgaagagagagaataaaaacataatgtgagtatg 40721826  T
Q  266 aaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    | ||| ||| || | ||||| || ||  ||||| | ||||||||||| ||||||    
T  40721825 agagagaaagttgtacaaaagttgtaccaaaatggctgtacaaatatcatttct 40721772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 319
Target Start/End: Complemental strand, 34373091 - 34373006
Alignment:
Q  234 tagaaagagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    |||| ||||||||| |||||||  ||||||||| ||| ||| || | ||||| |||||  ||||| ||||||||||||| ||||||    
T  34373091 tagagagagaataaaaacataatgtgagtatgagagagaaagttgtacaaaaattataccaaaatggttgtacaaatatcatttct 34373006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 319
Target Start/End: Complemental strand, 8352916 - 8352836
Alignment:
Q  239 agagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    ||||| |||||| ||||  ||||||||| ||| |||||| |  |||| ||||  |||||||||||||||||||| ||||||    
T  8352916 agagagtaagaatataatgtgagtatgagagagaaaattgtctaaaagttattaaaaaatagttgtacaaatatcatttct 8352836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 319
Target Start/End: Complemental strand, 12257025 - 12256902
Alignment:
Q  198 tcttgttattggttagaaacaatagagaga--aaagtttagaaagagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaa 295  Q
    |||| |||||||| | ||||||||||||||  ||| |  ||| |||||||||||| ||||  ||||||||| ||| ||  || | ||||| ||||| |||    
T  12257025 tcttcttattggtcaaaaacaatagagagagaaaaatgaagagagagaataagaagataatgtgagtatgagagagaaggttgtacaaaagttatacaaa 12256926  T
Q  296 aatagttgtacaaatataatttct 319  Q
    |||  |||||||||||| ||||||    
T  12256925 aatgattgtacaaatatcatttct 12256902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 319
Target Start/End: Complemental strand, 28494948 - 28494860
Alignment:
Q  232 tttagaaagagaataagaacataacttgagtatgaaagaaaaaattattc-aaaatttatataaaaatagttgtacaaatataatttct 319  Q
    |||||| ||| ||||| |||||||  ||||| ||||||| ||| || ||| |||| || | ||||||||||||||||||||| ||||||    
T  28494948 tttagagagaaaataaaaacataatatgagtgtgaaagagaaagttgttccaaaagttgtttaaaaatagttgtacaaatatcatttct 28494860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0514 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 141 - 319
Target Start/End: Original strand, 1735 - 1915
Alignment:
Q  141 gagtaatgatatttgaacaattactttt--tacaacttttgagacaa-cttgttatactctcttgttattggttagaaacaatagagagaaaagtttaga 237  Q
    ||||| |||||||||||||| | |||||  ||||||||||| ||||| ||||||||  |||||| |||||||| | ||| |||||||||| ||   |  |    
T  1735 gagtagtgatatttgaacaact-cttttggtacaacttttgggacaatcttgttatgttctcttcttattggtcaaaaataatagagagagaaaaatgaa 1833  T
Q  238 aagagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
     |||||||||||| ||||  ||||||||| ||| || ||| | ||||| ||||| |||||| ||||||||||||| ||||||    
T  1834 gagagaataagaagataatgtgagtatgagagagaagattgtacaaaagttatacaaaaatggttgtacaaatatcatttct 1915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 320
Target Start/End: Complemental strand, 17039342 - 17039157
Alignment:
Q  139 ttgagtaatgatatttgaacaattactttt-tacaacttttgagacaac-ttgttatactctcttgttattggttagaaacaat--agagagaaaagttt 234  Q
    |||||||| |||||||||||||||  |||  || || ||||| |||||| ||||| |  |||||| | |||||| | |||||||  |||||||||| |      
T  17039342 ttgagtaacgatatttgaacaatttttttgctataatttttgggacaaccttgttgtgttctcttttcattggtcaaaaacaatgcagagagaaaaatga 17039243  T
Q  235 agaaagagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttctt 320  Q
    ||| |||||||||||| ||||  ||||||||| ||| ||| || | ||||| ||||| |||||||||||||||||||| |||||||    
T  17039242 agagagagaataagaagataatgtgagtatgagagagaaagttgtacaaaaattatacaaaaatagttgtacaaatatcatttctt 17039157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 319
Target Start/End: Complemental strand, 11070375 - 11070229
Alignment:
Q  176 tttgagacaactt-gttatactctcttgttattggttagaaacaatagagaga--aaagtttagaaagagaataagaacataacttgagtatgaaagaaa 272  Q
    ||||||||||||| ||| | ||||||| | |||||| | ||||||||||||||  |||   |||| |||||||||||||||||  ||||||||| ||| |    
T  11070375 tttgagacaactttgttcttctctcttttcattggtcaaaaacaatagagagagaaaaaggtagagagagaataagaacataatgtgagtatgatagaga 11070276  T
Q  273 aaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    || || | ||||| |||||  ||||| ||||||||||||| ||||||    
T  11070275 aagttgtacaaaagttatactaaaatggttgtacaaatatcatttct 11070229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 137 - 320
Target Start/End: Original strand, 23034197 - 23034384
Alignment:
Q  137 ttttgagtaatgatatttgaacaattactttt--tacaacttttgagacaac-ttgttatactctcttgttattggttagaaacaatagagaga--aaag 231  Q
    ||||||||| |||||||||||||| | |||||  ||||||||||| |||||| ||||| | |||| || |||||||| | ||||||||||||||  |||     
T  23034197 ttttgagtagtgatatttgaacaact-cttttggtacaacttttgggacaaccttgttgtgctcttttcttattggtcaaaaacaatagagagagaaaaa 23034295  T
Q  232 tttagaaagagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttctt 320  Q
       ||| |||||||||||| ||||  ||||||||| |||| |  || | ||||| || || |||||| ||||||||||||| |||||||    
T  23034296 agaagagagagaataagaagataatgtgagtatgagagaataggttgtacaaaaattgtacaaaaatggttgtacaaatatcatttctt 23034384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 169 - 319
Target Start/End: Complemental strand, 37970087 - 37969932
Alignment:
Q  169 tacaacttttgagacaactt-gttatactctcttgttattggttagaaacaatagagaga----aaagtttagaaagagaataagaacataacttgagta 263  Q
    |||||| ||||||||||||| ||| | ||||||| | |||||| | ||||||||||||||    |||   |||| ||||||||| |||||||  ||||||    
T  37970087 tacaacatttgagacaactttgttgttctctcttctcattggtcaaaaacaatagagagagaaaaaaaggtagagagagaataaaaacataatgtgagta 37969988  T
Q  264 tgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    ||| ||| ||| || | ||||| || ||| ||||||||||||||||||| ||||||    
T  37969987 tgagagagaaagttgtacaaaagttgtatcaaaatagttgtacaaatatcatttct 37969932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 319
Target Start/End: Original strand, 2600451 - 2600604
Alignment:
Q  169 tacaacttttgagacaactt-gttatactctcttgttattggttagaaacaat--agagagaaaagtttagaaagagaataagaacataacttgagtatg 265  Q
    |||||| ||||||||||||| ||| | ||||||| | |||||| | |||||||  ||||||||||   |||| ||||||||| |||||||  ||||| ||    
T  2600451 tacaacctttgagacaactttgttgttctctcttctcattggtcaaaaacaatggagagagaaaaaggtagagagagaataaaaacataatgtgagtgtg 2600550  T
Q  266 aaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    | ||||||| || | ||||| || ||  ||||| ||||||||||||| ||||||    
T  2600551 agagaaaaagttgtacaaaagttgtactaaaatggttgtacaaatatcatttct 2600604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 176 - 317
Target Start/End: Complemental strand, 640539 - 640395
Alignment:
Q  176 tttgagacaactt-gttatactctcttgttattggttagaaacaat--agagagaaaagtttagaaagagaataagaacataacttgagtatgaaagaaa 272  Q
    ||||||||||||| ||| | ||||||| | |||||| | |||||||  |||||||||| | |||| | ||||||| |||||||  ||||||||| ||| |    
T  640539 tttgagacaactttgttgttctctcttctcattggtcaaaaacaattgagagagaaaaatgtagagaaagaataaaaacataatgtgagtatgagagaga 640440  T
Q  273 aaattattcaaaatttatataaaaatagttgtacaaatataattt 317  Q
    || || | ||||| || || |||||| ||||||||||||| ||||    
T  640439 aagttgtacaaaaattgtacaaaaatggttgtacaaatatcattt 640395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 319
Target Start/End: Complemental strand, 16567402 - 16567317
Alignment:
Q  234 tagaaagagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    |||| |||||||||||| ||||  ||||||||||||| |||||| |  |||| |||||  ||||| ||||||||||||| ||||||    
T  16567402 tagagagagaataagaatataatgtgagtatgaaagagaaaattgtcaaaaagttataataaaatggttgtacaaatatcatttct 16567317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 319
Target Start/End: Original strand, 16598260 - 16598345
Alignment:
Q  234 tagaaagagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    |||| |||||||||||| ||||  ||||||||||||| |||||| |  |||| |||||  ||||| ||||||||||||| ||||||    
T  16598260 tagagagagaataagaatataatgtgagtatgaaagagaaaattgtcaaaaagttataataaaatggttgtacaaatatcatttct 16598345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 188
Target Start/End: Original strand, 38861094 - 38861143
Alignment:
Q  139 ttgagtaatgatatttgaacaattactttttacaacttttgagacaactt 188  Q
    ||||| ||||||||||||||||| | ||||||||||||||| ||||||||    
T  38861094 ttgagaaatgatatttgaacaatcattttttacaacttttgtgacaactt 38861143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 318
Target Start/End: Original strand, 35590764 - 35590848
Alignment:
Q  234 tagaaagagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttc 318  Q
    |||| ||||||||| |||||||  ||||||||| ||| ||||||||  |||| || || |||||| ||||||||||||| |||||    
T  35590764 tagagagagaataataacataatgtgagtatgagagagaaaattatctaaaaattgtacaaaaatggttgtacaaatatgatttc 35590848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 319
Target Start/End: Complemental strand, 48522280 - 48522157
Alignment:
Q  198 tcttgttattggttagaaacaatagagaga--aaagtttagaaagagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaa 295  Q
    ||||||||||||| | ||||||||||||||  |||    ||| ||||||||| |||||||  ||||||||| ||||||| || |  |||| || || |||    
T  48522280 tcttgttattggtcaaaaacaatagagagagaaaaaggaagagagagaataataacataatgtgagtatgagagaaaaagttgtctaaaagttgtacaaa 48522181  T
Q  296 aatagttgtacaaatataatttct 319  Q
    ||| ||||||||||||| ||||||    
T  48522180 aatggttgtacaaatatcatttct 48522157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 140 - 312
Target Start/End: Original strand, 41910072 - 41910248
Alignment:
Q  140 tgagtaatgatatttgaacaattactttt--tacaacttttgagacaac-ttgttatactctcttgttattggttagaaacaatagagaga--aaagttt 234  Q
    |||||| |||||||||||||||| |||||  ||||||||||  |||||| ||||| |  |||||| |||||||| | ||||||||||||||  |||        
T  41910072 tgagtagtgatatttgaacaatt-cttttggtacaacttttaggacaaccttgttgtgttctcttcttattggtcaaaaacaatagagagagaaaaagga 41910170  T
Q  235 agaaagagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatat 312  Q
    ||| |||||||||||| ||||  ||||||||| ||| ||  || | ||||| || || |||||| |||||||||||||    
T  41910171 agagagagaataagaagataatgtgagtatgagagagaaggttgtacaaaagttgtacaaaaatggttgtacaaatat 41910248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 230
Target Start/End: Complemental strand, 384705 - 384643
Alignment:
Q  169 tacaacttttgagacaactt-gttatactctcttgttattggttagaaacaatagagagaaaa 230  Q
    |||||| ||||||||||||| ||||| ||||||| | |||||||| ||| |||||||||||||    
T  384705 tacaacctttgagacaactttgttattctctcttctcattggttaaaaaaaatagagagaaaa 384643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 319
Target Start/End: Original strand, 33341134 - 33341195
Alignment:
Q  258 tgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    ||||||||||||| |||||| | ||||| |||||  ||||| ||||||||||||| ||||||    
T  33341134 tgagtatgaaagagaaaattgtacaaaagttatactaaaattgttgtacaaatatcatttct 33341195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 47379712 - 47379655
Alignment:
Q  171 caacttttgagacaactt-gttatactctcttgttattggttagaaacaatagagaga 227  Q
    |||||||||||||||||| ||| | ||||||| | |||||||| ||||||||||||||    
T  47379712 caacttttgagacaactttgttgttctctcttctcattggttaaaaacaatagagaga 47379655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 319
Target Start/End: Original strand, 28548211 - 28548291
Alignment:
Q  239 agagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    ||||||||| |||||||  ||||||||| ||| ||| || | ||||| || ||  ||||||||||||||||||| ||||||    
T  28548211 agagaataaaaacataatgtgagtatgagagagaaagttgtacaaaagttgtaccaaaatagttgtacaaatatcatttct 28548291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 188
Target Start/End: Original strand, 30941381 - 30941433
Alignment:
Q  136 gttttgagtaatgatatttgaacaattactttttacaacttttgagacaactt 188  Q
    |||| ||| ||||||||||||||||  | ||||||||||||||| ||||||||    
T  30941381 gtttggagaaatgatatttgaacaaccattttttacaacttttgtgacaactt 30941433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 310
Target Start/End: Complemental strand, 47379662 - 47379586
Alignment:
Q  234 tagaaagagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaat 310  Q
    |||| ||||| ||| |||||||  ||||||||| ||| |||||||| ||||| || ||| ||||| |||||||||||    
T  47379662 tagagagagactaaaaacataatgtgagtatgagagagaaaattatacaaaagttgtatcaaaattgttgtacaaat 47379586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 144 - 319
Target Start/End: Complemental strand, 3123 - 2944
Alignment:
Q  144 taatgatatttgaacaattactttt-tacaacttttgagacaacttg-ttatactctcttgttattggttagaaacaat--agagagaaaagtttagaaa 239  Q
    ||||||||||||||||| |  |||  ||||||||||| ||||||||  || | ||||||| | |||||| | |||||||  ||||||||||    ||| |    
T  3123 taatgatatttgaacaacttttttgctacaacttttgggacaactttattgtgctctcttttcattggtcaaaaacaatggagagagaaaaaggaagaga 3024  T
Q  240 gagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    |||||| |||| ||||  ||||||||| |||||||||| | |||||| |||| |||||| |||||| |||||||||||||    
T  3023 gagaatgagaagataatgtgagtatgagagaaaaaattgtacaaaatatataaaaaaatggttgtataaatataatttct 2944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 319
Target Start/End: Complemental strand, 10557592 - 10557410
Alignment:
Q  141 gagtaatgatatttgaacaattactttt-tacaacttttgagacaa-cttgttatactctcttgttattggttagaaacaat--agagagaaaagtttag 236  Q
    |||||||||||||||||||| |  |||  |||||||||||  |||| |||||| ||||||||| | |||||| | |||||||  ||||||||||    ||    
T  10557592 gagtaatgatatttgaacaacttttttgctacaacttttggaacaatcttgttgtactctcttttcattggtcaaaaacaatggagagagaaaaagaaag 10557493  T
Q  237 aaagagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    | |||||||| ||| ||||  ||||||||| ||| ||| ||||  |||| || ||||||||| ||||||||||||| ||||||    
T  10557492 agagagaataggaagataatatgagtatgagagataaagttatataaaagttgtataaaaatggttgtacaaatatcatttct 10557410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 245 - 317
Target Start/End: Complemental strand, 3401159 - 3401087
Alignment:
Q  245 taagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataattt 317  Q
    |||||||||||  |||||||||||||||||||  ||||||| ||||   ||||||||||||||||||| ||||    
T  3401159 taagaacataatatgagtatgaaagaaaaaatcgttcaaaaattatcacaaaatagttgtacaaatatcattt 3401087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 319
Target Start/End: Complemental strand, 11635691 - 11635618
Alignment:
Q  246 aagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    |||||||||| |||||||||||||| ||| ||||| |||| ||||   ||||| ||||||||||||| ||||||    
T  11635691 aagaacataatttgagtatgaaagagaaagttattaaaaaattatcataaaattgttgtacaaatatcatttct 11635618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 188
Target Start/End: Complemental strand, 5080634 - 5080591
Alignment:
Q  145 aatgatatttgaacaattactttttacaacttttgagacaactt 188  Q
    ||||||||||||||||  ||||||||||||||||| ||||||||    
T  5080634 aatgatatttgaacaaccactttttacaacttttgtgacaactt 5080591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 188
Target Start/End: Complemental strand, 8098669 - 8098619
Alignment:
Q  138 tttgagtaatgatatttgaacaattactttttacaacttttgagacaactt 188  Q
    |||||| ||||||||||||||||  | ||||||||||||||| ||||||||    
T  8098669 tttgagaaatgatatttgaacaaccattttttacaacttttgtgacaactt 8098619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 270
Target Start/End: Original strand, 9395225 - 9395358
Alignment:
Q  141 gagtaatgatatttgaacaa-ttactttttacaacttttgagacaa-cttgttatactctcttgttattggttagaaacaat--agagagaaaagtttag 236  Q
    |||||||||||||||||||| ||  ||  ||||||||||| ||||| |||||| | ||||||| | |||||| | |||||||  ||||||||||    ||    
T  9395225 gagtaatgatatttgaacaacttttttgctacaacttttgggacaatcttgttgtgctctcttatcattggtcaaaaacaatggagagagaaaaaagaag 9395324  T
Q  237 aaagagaataagaacataacttgagtatgaaaga 270  Q
    | |||||||||||| ||||  |||||||||||||    
T  9395325 agagagaataagaagataatgtgagtatgaaaga 9395358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 317
Target Start/End: Original strand, 31934151 - 31934225
Alignment:
Q  243 aataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataattt 317  Q
    |||||||| ||||  ||||||||| ||| |||||| ||||||| || ||| ||||| ||||||||||||| ||||    
T  31934151 aataagaatataatgtgagtatgacagagaaaattgttcaaaaattgtatcaaaatggttgtacaaatatcattt 31934225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 319
Target Start/End: Original strand, 11742991 - 11743052
Alignment:
Q  258 tgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    ||||||||| |||||||||| |  |||| ||||  |||||||||||||||||||| ||||||    
T  11742991 tgagtatgagagaaaaaattgtctaaaaattatcaaaaaatagttgtacaaatattatttct 11743052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 188
Target Start/End: Complemental strand, 18065162 - 18065113
Alignment:
Q  140 tgagtaatgatatttgaacaattacttttt-acaacttttgagacaactt 188  Q
    |||| ||||||||||||||||| ||||||| |||||||||| ||||||||    
T  18065162 tgagaaatgatatttgaacaatcactttttgacaacttttgtgacaactt 18065113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 188
Target Start/End: Complemental strand, 25811910 - 25811862
Alignment:
Q  140 tgagtaatgatatttgaacaattactttttacaacttttgagacaactt 188  Q
    |||| ||||||||||||||||  | ||||||||||||||| ||||||||    
T  25811910 tgagaaatgatatttgaacaaccattttttacaacttttgtgacaactt 25811862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 319
Target Start/End: Complemental strand, 32253963 - 32253781
Alignment:
Q  141 gagtaatgatatttgaacaattactttttacaacttttgagacaacttgttat--actctcttgttattggttagaaacaat--agagagaaaagtttag 236  Q
    ||||| |||||||||||||| || ||  ||||||||||| ||||| || || |   ||||||| | |||||||| |||||||  |||||||||| |  ||    
T  32253963 gagtagtgatatttgaacaactatttggtacaacttttgtgacaatttttttttctctctcttttcattggttaaaaacaatggagagagaaaaatgaag 32253864  T
Q  237 aaagagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    | || ||||||||  ||||  ||||||||| ||| ||||||||   ||| ||||  |||| | ||||||||||||| ||||||    
T  32253863 agagggaataagagtataatgtgagtatgagagagaaaattatcacaaaattatcaaaaagtggttgtacaaatatcatttct 32253781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 188
Target Start/End: Original strand, 34047386 - 34047434
Alignment:
Q  140 tgagtaatgatatttgaacaattactttttacaacttttgagacaactt 188  Q
    |||| ||||||||||||||||  | ||||||||||||||| ||||||||    
T  34047386 tgagaaatgatatttgaacaaccattttttacaacttttgtgacaactt 34047434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0592 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0592
Description:

Target: scaffold0592; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 319
Target Start/End: Complemental strand, 1064 - 911
Alignment:
Q  169 tacaacttttgagacaactt-gttatactctcttgttattggttagaaacaatagagaga--aaagtttagaaagagaataagaacataacttgagtatg 265  Q
    |||||||||||||| ||||| ||| | ||||||| | |||||| | |||||| |||||||  |||    ||| ||| ||||| |||||||  ||||||||    
T  1064 tacaacttttgagataactttgttgttctctcttttcattggtcaaaaacaacagagagagaaaaaggaagagagaaaataaaaacataatgtgagtatg 965  T
Q  266 aaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataatttct 319  Q
    | ||| |||||||| ||||| |||||| ||| | ||||||||||||| ||||||    
T  964 agagagaaaattatacaaaaattatatcaaattggttgtacaaatatcatttct 911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 188
Target Start/End: Original strand, 8672 - 8715
Alignment:
Q  145 aatgatatttgaacaattactttttacaacttttgagacaactt 188  Q
    ||||||||||||||||| | ||||||||||||||| ||||||||    
T  8672 aatgatatttgaacaatcattttttacaacttttgtgacaactt 8715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 141 - 317
Target Start/End: Complemental strand, 48837 - 48657
Alignment:
Q  141 gagtaatgatatttgaacaattactttt--tacaacttttgagacaac-ttgttatactctcttgttattggttagaaacaatagagaga--aaagttta 235  Q
    |||||||||||||||||||||| |||||  ||||| ||||| |||||| ||||| |  |||||| |||||||| | ||||||||||||||  |||    |    
T  48837 gagtaatgatatttgaacaatt-cttttgatacaatttttgggacaaccttgttgtgttctcttcttattggtcaaaaacaatagagagagaaaaagaaa 48739  T
Q  236 gaaagagaataagaacataacttgagtatgaaagaaaaaattattcaaaatttatataaaaatagttgtacaaatataattt 317  Q
    || |||||||||||| ||||  ||||||||| ||| ||  || | ||||| || || ||||||  |||||||||||| ||||    
T  48738 gagagagaataagaagataatgtgagtatgagagagaaggttgtacaaaaattgtacaaaaatgattgtacaaatatcattt 48657  T

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Target: scaffold0115 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 227
Target Start/End: Original strand, 15078 - 15164
Alignment:
Q  141 gagtaatgatatttgaacaattactttttacaacttttgagacaacttgttatactctcttgttattggttagaaacaatagagaga 227  Q
    ||||| |||||||||||||| || ||  ||||||||||| |||||||| || | |||| || | |||||||| ||||||| ||||||    
T  15078 gagtagtgatatttgaacaactatttggtacaacttttgtgacaacttctttttctcttttttcattggttaaaaacaatggagaga 15164  T

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Target: scaffold0036 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 227
Target Start/End: Complemental strand, 18185 - 18099
Alignment:
Q  141 gagtaatgatatttgaacaattactttttacaacttttgagacaacttgttatactctcttgttattggttagaaacaatagagaga 227  Q
    ||||| |||||||||||||| || ||  ||||||||||  |||||||| || | ||||||| | |||||||| ||||||| ||||||    
T  18185 gagtagtgatatttgaacaactatttgatacaacttttatgacaacttttttttctctcttttcattggttaaaaacaatggagaga 18099  T

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