View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13306_low_20 (Length: 329)
Name: NF13306_low_20
Description: NF13306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13306_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 31 - 319
Target Start/End: Original strand, 7423180 - 7423468
Alignment:
| Q |
31 |
gcatttcatcagattaatattttgacaccaatgctaacaattctgtggccaagtgtaactaccacaatgaataataatcaattctggaagcacgagtgga |
130 |
Q |
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| T |
7423180 |
gcatttcatcagattaaaattttgacaccaatgctaacaattccgtggccaagtgtaactaccacaatgaataataatcaattctggaagcacgagtgga |
7423279 |
T |
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| Q |
131 |
ggaaacatggaacctgctccacattccaaaaaattgattattttcaacatggagttagtctctgggccagagaaaatataactgctatactggagcaagc |
230 |
Q |
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| T |
7423280 |
ggaaacatggaacctgctccacattccaaaaaattgattattttcaacatggagttaatctctgggccagagaaaatataactgctatactggagcaagc |
7423379 |
T |
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| Q |
231 |
tggtattacacccgggaaaagttatgatcaaactaggattatcacagctataaatgcaaagacgggatctgatcccgagctggtctgtg |
319 |
Q |
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| T |
7423380 |
tggtattacacccgggaaaagttatgatcaaactaggattatcacagctataaatgcaaagacgggatctgatcccgagctggtttgtg |
7423468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 122 - 295
Target Start/End: Original strand, 7517071 - 7517244
Alignment:
| Q |
122 |
acgagtggaggaaacatggaacctgctccacattccaaaaaattgattattttcaacatggagttagtctctgggccagagaaaatataactgctatact |
221 |
Q |
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| T |
7517071 |
acgagtggagtcaacacagaacgtgctcgacattccaaaaactatattactttcaacatgcagtgactctttgggcctgagaaaatatcacagctatact |
7517170 |
T |
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| Q |
222 |
ggagcaagctggtattacacccgggaaaagttatgatcaaactaggattatcacagctataaatgcaaagacgg |
295 |
Q |
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| T |
7517171 |
ggaacaaactactattatgcccgggagaagttatgaccaaaatttgattattggagctataaagacaaagacgg |
7517244 |
T |
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