View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13306_low_21 (Length: 313)
Name: NF13306_low_21
Description: NF13306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13306_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 25828395 - 25828698
Alignment:
| Q |
1 |
tttacataatattcaccatcctttgcagcttttcaaatcaatttgtcatctgacacctaatcaaatatatcgcaaaatactagaagcaatatccgggcta |
100 |
Q |
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||||||||||| || ||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
25828395 |
tttacataatactcgccatccttttcagctttccaaatcaatttatcatctgacacctaatcaaatatatcgcaaaatactagaagcaatattcgggcta |
25828494 |
T |
|
| Q |
101 |
aaaacttgattaatcaaatcatggttccataccttatgcgcaggaactatcggactagcaacacaaaaattacgaagatggtatgtgtttggcatattac |
200 |
Q |
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||||| |||| |||||||||||||||||||||||| ||| |||||| ||| ||||||||||| ||||||||| || ||||||| ||||||||||||||| |
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| T |
25828495 |
aaaacatgatgaatcaaatcatggttccatacctttcgcgtaggaaccatcagactagcaacagaaaaattacaaacatggtatatgtttggcatattac |
25828594 |
T |
|
| Q |
201 |
catcaatgtggtcaccagtaacaagcc--aaggttcatcaagaatggaaataaaaatacttggccctatgctccatcaaacactcccttgaactattccc |
298 |
Q |
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| T |
25828595 |
catcaatacggtcacca-ttacaagccaaaaggttcatcaagaatggaaataaaagtacttggtcctatgcaccatcaaacacccccttgaactattccc |
25828693 |
T |
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| Q |
299 |
ctttg |
303 |
Q |
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||||| |
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| T |
25828694 |
ctttg |
25828698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 76
Target Start/End: Original strand, 25430617 - 25430656
Alignment:
| Q |
37 |
atcaatttgtcatctgacacctaatcaaatatatcgcaaa |
76 |
Q |
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| T |
25430617 |
atcaatttgtcatctgacacctaatcaaacatatcgcaaa |
25430656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 14230050 - 14230003
Alignment:
| Q |
8 |
aatattcaccatcctttgcagcttttcaaatcaatttgtcatctgaca |
55 |
Q |
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|||| |||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
14230050 |
aatactcaccatccttttcagcttttcagatcaatttgtcatctgaca |
14230003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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