View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13306_low_24 (Length: 303)
Name: NF13306_low_24
Description: NF13306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13306_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 286
Target Start/End: Original strand, 11796779 - 11797041
Alignment:
| Q |
18 |
attatgaatatttaattttagatatggtgattgagcattgactttaaattttaatgcatgctcgtttcttacgttgtgtctattatataaataaaattta |
117 |
Q |
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| T |
11796779 |
attatgaatatttaattttagagatggtgcttgagcattgactttaaattttaatgcatgctcgtttcttgcgttgtgtctattatataaataaaattta |
11796878 |
T |
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| Q |
118 |
taacttagaaacatgtgattcaatccctcnnnnnnnnnnnnnntgtgattcaaatttatacactcattgttctataaaagtattcttcattgtaccctaa |
217 |
Q |
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| T |
11796879 |
taacttagaaacatgtgattcaatccctc------aaaaacaatgtgattcaaatttatacactcattgttctataaaagtattcttcattgtaccttaa |
11796972 |
T |
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| Q |
218 |
aaaaggggtcacattattttcaagtaaagaaagggttcaacactcttgcacaaccacctttataataag |
286 |
Q |
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| T |
11796973 |
aagaggggtcacattattttcaagtaaagaaagggttcaacactcttgcacaaccacccttataataag |
11797041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 143
Target Start/End: Original strand, 11778118 - 11778186
Alignment:
| Q |
75 |
atgctcgtttcttacgttgtgtctattatataaataaaatttataacttagaaacatgtgattcaatcc |
143 |
Q |
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| T |
11778118 |
atgctcgtttattgcgttgtgtgtatattagaaataaaacttttaacttagaaatatgtgattcaatcc |
11778186 |
T |
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