View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13306_low_26 (Length: 269)
Name: NF13306_low_26
Description: NF13306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13306_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 143; Significance: 3e-75; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 45 - 255
Target Start/End: Original strand, 5481101 - 5481306
Alignment:
| Q |
45 |
aacaaagagacaaataaaccaaaaatctacttgccattttgttctatgtatatccattcgtcaaaagctcataatcacaaatttgaaaccatctaatatc |
144 |
Q |
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| T |
5481101 |
aacaaagagacaaataaaccaaaaagctacttgccatcttgttctatgtatatccattcatcaaaagctcgtaatcaccaatttgaaaccatctgatatc |
5481200 |
T |
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| Q |
145 |
ctctggtggggtgggacgatggaaagcacaaaaatcatcattggacatattgttatttctctcttcttcctttttgcatcaactcaatgtgaagttaaga |
244 |
Q |
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| T |
5481201 |
ctctggtgggatg-----atggcaagcacaaaaatcatcagtgtacatattgttattcctctcttcttcctttttgcatcaactcaatgtgaagttaaaa |
5481295 |
T |
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| Q |
245 |
gccttaatgtt |
255 |
Q |
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| T |
5481296 |
gccttaatgtt |
5481306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 8 - 255
Target Start/End: Original strand, 5475974 - 5476219
Alignment:
| Q |
8 |
agaagcaaagggacaaataggttctgtagaaaaatataacaaagagacaaataaaccaaaaatc-tacttgccattttgttctatgtata--tccattcg |
104 |
Q |
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| T |
5475974 |
agaaacaaagagacagatatgttctgtagaaaaatataacaaagagacaaataaaccaaaaagcataactgccatttggttctatataaacatccattca |
5476073 |
T |
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| Q |
105 |
tcaaaagctcataatcacaaatttgaaaccatctaatatcctctggtggggtgggacgatggaaagcacaaaaatcatcattggacatattgttatttct |
204 |
Q |
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| T |
5476074 |
tcaaaagctcattctggtaaatttaaaaccaactgatatcctctggtgggatg-----atggcaagcacaaaaatcatcattggacatattgttatttct |
5476168 |
T |
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| Q |
205 |
ctcttcttcctttttgcatcaactcaatgtgaagttaagagccttaatgtt |
255 |
Q |
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| T |
5476169 |
ctcttcttcctttttgcatcaactcaatgtgaagttaagagccttaatgtt |
5476219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 255
Target Start/End: Original strand, 5466460 - 5466553
Alignment:
| Q |
162 |
gatggaaagcacaaaaatcatcattggacatattgttatttctctcttcttcctttttgcatcaactcaatgtgaagttaagagccttaatgtt |
255 |
Q |
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| T |
5466460 |
gatggcaagcacaagaatcgtctttggatattatgttattgctctcctctttctttttgcatcaactcagtgtgtagttatgagccttgatgtt |
5466553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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