View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13306_low_27 (Length: 240)
Name: NF13306_low_27
Description: NF13306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13306_low_27 |
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| [»] scaffold0092 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 48 - 170
Target Start/End: Original strand, 21590285 - 21590407
Alignment:
| Q |
48 |
tggtggttctcaacgtagttcatggtgggttccaattctatcatgaaccactgttgttactgccattaaaaacgctagccatcaatttggaaatatttca |
147 |
Q |
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| T |
21590285 |
tggtggttctcggcatagttcatggtgggttccaattctatcatgaaccactgttgttactgccattaaaaactctagccatcaattaggaagtattgca |
21590384 |
T |
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| Q |
148 |
aggggaggttaattcatacaacc |
170 |
Q |
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| T |
21590385 |
aggggcggttaattcatacaacc |
21590407 |
T |
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Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 65 - 178
Target Start/End: Complemental strand, 40900566 - 40900453
Alignment:
| Q |
65 |
gttcatggtgggttccaattctatcatgaaccactgttgttactgccattaaaaacgctagccatcaatttggaaatatttcaaggggaggttaattcat |
164 |
Q |
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| T |
40900566 |
gttcgtggtggattccaattctatcaagaaccacttttgttactgtcattaaaaacgctagccatcaattgggaaatattgcaaagggaggttcattcat |
40900467 |
T |
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| Q |
165 |
acaaccatgactaa |
178 |
Q |
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| T |
40900466 |
acaacattgactaa |
40900453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 6706215 - 6706169
Alignment:
| Q |
21 |
tgtggtggtgctgctgttagttttttgtggtggttctcaacgtagtt |
67 |
Q |
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| T |
6706215 |
tgtggcggtgatgctgctagctttttgtggtggttctcaacgtagtt |
6706169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 40681605 - 40681561
Alignment:
| Q |
23 |
tggtggtgctgctgttagttttttgtggtggttctcaacgtagtt |
67 |
Q |
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| T |
40681605 |
tggtggtggtgctgctagttttttgtggtggttctcaacgtagtt |
40681561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 231
Target Start/End: Complemental strand, 40681124 - 40681095
Alignment:
| Q |
202 |
ggcgatgagttttgtttgtggtgatgatgt |
231 |
Q |
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| T |
40681124 |
ggcgatgagttttgtttgtggtgatgatgt |
40681095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 15496607 - 15496561
Alignment:
| Q |
21 |
tgtggtggtgctgctgttagttttttgtggtggttctcaacgtagtt |
67 |
Q |
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| T |
15496607 |
tgtggtggtggtactgctagttttttgtggtggttctcaacgtagtt |
15496561 |
T |
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Target: scaffold0092 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0092
Description:
Target: scaffold0092; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 23638 - 23581
Alignment:
| Q |
21 |
tgtggtggtgctgctgttagttttttgtggtggttctcaacgtagttcatggtgggtt |
78 |
Q |
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| T |
23638 |
tgtggtggtggtgctgctagttttttgtggtgcttctcggcatagttcatggtgggtt |
23581 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 22335259 - 22335313
Alignment:
| Q |
21 |
tgtggtggtgctgctgttagttttttgtggtggttctcaacgtagttcatggtgg |
75 |
Q |
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| T |
22335259 |
tgtggtggtgctggtgctagttttttgtggtggttcttggggtagttcatggtgg |
22335313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 42677455 - 42677503
Alignment:
| Q |
119 |
acgctagccatcaatttggaaatatttcaaggggaggttaattcataca |
167 |
Q |
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| T |
42677455 |
acgctagccatcaattgaaaaatattgtaaggggaggttaattcataca |
42677503 |
T |
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