View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13306_low_29 (Length: 221)
Name: NF13306_low_29
Description: NF13306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13306_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 1e-95; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 20 - 204
Target Start/End: Original strand, 2021884 - 2022068
Alignment:
| Q |
20 |
ttctcattgtaactaactgaatcaaataagttagagggatttgacctttatagatactaattatcatcacctaatcataaccaacttttgatcaataaag |
119 |
Q |
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| T |
2021884 |
ttctcattgtaactaactgaatcaaataagttagagggatttgacctttatagatactaattatcatcacgtaatcataaccaacttttgatcaataaag |
2021983 |
T |
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| Q |
120 |
aatattcatattctctttctcaaagatagcttaggtttctactgtattgaacaccgattatttaactcgatactggtgttccttc |
204 |
Q |
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| T |
2021984 |
aatattcatattctctttctcaaagatagcttaggtttctactgtattgaacatcgattatttaactcgatactggtgttccttc |
2022068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 1990321 - 1990494
Alignment:
| Q |
19 |
attctcattgtaactaactgaatcaaataagttagagggatttgacctttatagatactaattatcatcacctaatcataaccaacttttgatcaataaa |
118 |
Q |
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| T |
1990321 |
attctcattgtaacgaactgaatcaaataagttagagggatttgatc------------aattatcatcacgtaatcataaccaacttttgatcaataaa |
1990408 |
T |
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| Q |
119 |
gaatattcatattctctttctcaaagatagcttaggtttctactgtattgaacaccgattatttaactcgatactggtgttccttc |
204 |
Q |
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| T |
1990409 |
gaatattcatattctctttctcaaagatagcttaggtttctactatattgaacatcgattatttaacttgatactggtgttccttc |
1990494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 2036025 - 2036189
Alignment:
| Q |
19 |
attctcattgtaactaactgaatcaaataagttagagggatttgacctttatagatactaattatcatcacctaatcataaccaacttttgatcaataaa |
118 |
Q |
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| T |
2036025 |
attctcattgtaacgaactgaatcaaataagttagagggatttgatc------------aattaccatcacgtaatcataaccaacttttgatcaataaa |
2036112 |
T |
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| Q |
119 |
gaatattcatattctctttctcaaagatagcttaggtttctactgtattgaacaccgattatttaactcgatactggtgttccttc |
204 |
Q |
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| T |
2036113 |
gaatattcatattctctt---------tagcttaggtttctactatattgaacatcgattatttaactcgatactggtgttccttc |
2036189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 2019266 - 2019313
Alignment:
| Q |
29 |
taactaactgaatcaaataagttagagggatttgacctttatagatac |
76 |
Q |
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| T |
2019266 |
taactaactgaatcaaatcagttagagggatttgacctctataaatac |
2019313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 141 - 204
Target Start/End: Complemental strand, 48204741 - 48204678
Alignment:
| Q |
141 |
aaagatagcttaggtttctactgtattgaacaccgattatttaactcgatactggtgttccttc |
204 |
Q |
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| T |
48204741 |
aaagatagcttaggtttctactgtattgaacatcgattatttaactcgatactggtgttccttc |
48204678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 141 - 203
Target Start/End: Original strand, 2428286 - 2428348
Alignment:
| Q |
141 |
aaagatagcttaggtttctactgtattgaacaccgattatttaactcgatactggtgttcctt |
203 |
Q |
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|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
2428286 |
aaagatagcttaggtttctactgtattgaacatcaattatttaactcgatactggtgttcctt |
2428348 |
T |
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