View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13306_low_3 (Length: 512)
Name: NF13306_low_3
Description: NF13306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13306_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 22 - 479
Target Start/End: Complemental strand, 51741685 - 51741228
Alignment:
| Q |
22 |
acatataagaagtataatactattgtacttggaatactaattaatcatgaattatgcccttcttaacatctctatgttgttgaatgaccaaaacagaacc |
121 |
Q |
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| T |
51741685 |
acatataagaagtataatactattgtacttggaatactaattaatcatgaattatgcccttcttaacatctctatgttgttgaatgaccaaaacagaacc |
51741586 |
T |
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| Q |
122 |
atgaatatcaaagtctgaagaagccaagacatcaccaaccgttccaagttctggacattcttcccaatcactcatacctattgttaatgaactatttcct |
221 |
Q |
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| T |
51741585 |
atgaatatcaaagtctgaagaagccaagacatcaccaaccgttccaagttctggacattcttcccaatcactcatacctattgttaatgaactatttcct |
51741486 |
T |
|
| Q |
222 |
ctaccacctcttcctactataaacaaagagtacaagtccccaatctctttcaaagattccactgtttgtgttccatctttcacaaacttttccacatatc |
321 |
Q |
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| T |
51741485 |
ctaccacctcttcctactataaacaaagagtacaagtccccaatctctttcaaagattccactgtttgtgttccatctttcacaaacttttccacatatc |
51741386 |
T |
|
| Q |
322 |
caatctgtcctgaagccacatacctgttataaaaatcaaccataaaagtattgtcaatctcattcacagtctcttcccctgataaagacattaaaatttc |
421 |
Q |
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| T |
51741385 |
caatctgtcctgaagccacatacctgttataaaaatcaaccataaaagtattgtcaatctcattcacagtctcttcccctgataaagacattaaaatttc |
51741286 |
T |
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| Q |
422 |
tttttcatcatattgtactccactttcaatatgttctttatgtgacaaagacgaagac |
479 |
Q |
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| T |
51741285 |
tttttcatcatattgtactccactttcaatatgttctttatgtgacaaagacgaagac |
51741228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 62 - 447
Target Start/End: Complemental strand, 10202446 - 10202058
Alignment:
| Q |
62 |
ttaatcatgaattatgcccttcttaacatctctatgttgttgaatgaccaaaacagaaccatgaatatcaaagtctgaagaagccaagacatcaccaacc |
161 |
Q |
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||||||||| |||| || ||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| || | ||||||||| |
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| T |
10202446 |
ttaatcatgtattagacctttcttgacatctctatgttgttgaatgaccaacacagaaccatgaatatcaaaatctgaagaagctaaaatatcaccaact |
10202347 |
T |
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| Q |
162 |
gttccaagttctggacattcttcccaatcactcatacctattgttaatgaactatttcctctaccacctcttcctactataaacaaagagtacaagtccc |
261 |
Q |
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| T |
10202346 |
gatccaagttctggacattcctcccaatcactcatatctattgttagtgaactatttcctctaccaccctttccaactataaacaaagagtatatgtcac |
10202247 |
T |
|
| Q |
262 |
caatctctttcaaagattccactgtttgtgttccatctttcacaaacttttccacatatccaatctgtcctgaagccacatacctgttataaaaatcaac |
361 |
Q |
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|||||||||||||| |||| ||||||||| |||||| |||||||| ||||| ||||||||||| | ||| ||||| |||| |||||||||||||||||| |
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| T |
10202246 |
caatctctttcaaacattcaactgtttgtcttccattcttcacaaaattttctacatatccaatttttcccgaagcgacatgcctgttataaaaatcaac |
10202147 |
T |
|
| Q |
362 |
cataaaagtattgtcaatc---tcattcacagtctcttcccctgataaagacattaaaatttctttttcatcatattgtactccacttt |
447 |
Q |
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||| || ||||||||||| |||||| ||||||||||||| || || ||||||||||| |||||||| | | ||||||||||||||| |
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| T |
10202146 |
catgaagttattgtcaatctcatcattcgcagtctcttccccggacaacgacattaaaatctctttttccttagattgtactccacttt |
10202058 |
T |
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