View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13306_low_30 (Length: 204)

Name: NF13306_low_30
Description: NF13306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13306_low_30
NF13306_low_30
[»] chr1 (11 HSPs)
chr1 (23-187)||(1816180-1816344)
chr1 (20-187)||(1856700-1856867)
chr1 (23-174)||(1868308-1868459)
chr1 (23-174)||(1842699-1842850)
chr1 (20-183)||(9218911-9219074)
chr1 (20-183)||(9200395-9200558)
chr1 (20-122)||(9118348-9118450)
chr1 (20-120)||(9170828-9170928)
chr1 (23-180)||(9162005-9162162)
chr1 (23-132)||(9229799-9229908)
chr1 (152-180)||(9156222-9156250)
[»] chr7 (1 HSPs)
chr7 (20-187)||(37567642-37567809)


Alignment Details
Target: chr1 (Bit Score: 149; Significance: 7e-79; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 23 - 187
Target Start/End: Original strand, 1816180 - 1816344
Alignment:
Q  23 aagagtttgaccacattcctgtgatttatttgagagacaacatccacctcattaatgaattgttcaatttggctttcgtctattgttttggactttttga 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1816180 aagagtttgaccacattcctgtgatttatttgagagacaacatccacctcgttaatgaattgttcaatttggctttcgtctattgttttggactttttga 1816279  T
Q  123 tggcaacaattctcttatcatcaagttcccctttgaaaactgtaccaaaacctcctctacctatg 187  Q
    | || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1816280 tagccacaattctattatcatcaagttcccctttgaaaactgtaccaaaacctcctctacctatg 1816344  T

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Target: chr1; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 20 - 187
Target Start/End: Complemental strand, 1856867 - 1856700
Alignment:
Q  20 cctaagagtttgaccacattcctgtgatttatttgagagacaacatccacctcattaatgaattgttcaatttggctttcgtctattgttttggactttt 119  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  1856867 cctaagagtttgaccacatttctgtgatttatttgagagacaacatccacctcattaatgaattgttcaatttggcttttgtctattgttttagactttt 1856768  T
Q  120 tgatggcaacaattctcttatcatcaagttcccctttgaaaactgtaccaaaacctcctctacctatg 187  Q
    |||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  1856767 tgatagcaacaattctattatcatcaagttcccctttgtaaactgtaccaaaacctcctttacctatg 1856700  T

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Target: chr1; HSP #3
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 23 - 174
Target Start/End: Complemental strand, 1868459 - 1868308
Alignment:
Q  23 aagagtttgaccacattcctgtgatttatttgagagacaacatccacctcattaatgaattgttcaatttggctttcgtctattgttttggactttttga 122  Q
    ||||||||||| |||||||| |||||||||||||||| |||| ||||||||||||||||||| || |||||||||   |||||| |||| || |||||||    
T  1868459 aagagtttgacaacattcctatgatttatttgagagagaacaaccacctcattaatgaattgatcgatttggcttctatctattatttttgattttttga 1868360  T
Q  123 tggcaacaattctcttatcatcaagttcccctttgaaaactgtaccaaaacc 174  Q
    | ||||| ||||| |||||||| ||    ||||||||||| |||||||||||    
T  1868359 tagcaacgattcttttatcatctagaagtcctttgaaaacggtaccaaaacc 1868308  T

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Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 23 - 174
Target Start/End: Complemental strand, 1842850 - 1842699
Alignment:
Q  23 aagagtttgaccacattcctgtgatttatttgagagacaacatccacctcattaatgaattgttcaatttggctttcgtctattgttttggactttttga 122  Q
    ||||||||||| |||||||| |||||||||||||||| || |   ||||||||||||||||| |  |||||||||   |||||| |||| || |||||||    
T  1842850 aagagtttgacaacattcctatgatttatttgagagagaataattacctcattaatgaattgattgatttggcttctatctattatttttgattttttga 1842751  T
Q  123 tggcaacaattctcttatcatcaagttcccctttgaaaactgtaccaaaacc 174  Q
    | ||||| ||||| |||||||| ||    |||||| |||| |||||||||||    
T  1842750 tagcaacgattcttttatcatctagaaatcctttgtaaacagtaccaaaacc 1842699  T

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Target: chr1; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 20 - 183
Target Start/End: Original strand, 9218911 - 9219074
Alignment:
Q  20 cctaagagtttgaccacattcctgtgatttatttgagagacaacatccacctcattaatgaattgttcaatttggctttcgtctattgttttggactttt 119  Q
    ||||| |||||||| || ||||| ||||||||||| || | |||| | ||||||||||||||||| || || ||  || |||||||| ||||||||||||    
T  9218911 cctaaaagtttgacaacgttcctatgatttatttgggacagaacaactacctcattaatgaattgctcgatctgatttgcgtctattattttggactttt 9219010  T
Q  120 tgatggcaacaattctcttatc-atcaagttcccctttgaaaactgtaccaaaacctcctctacc 183  Q
    |||  || |||||| | |||||   |||  |  ||||||||||||||||||||||||||||||||    
T  9219011 tgacagcgacaattttgttatcgggcaaaat-tcctttgaaaactgtaccaaaacctcctctacc 9219074  T

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Target: chr1; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 20 - 183
Target Start/End: Original strand, 9200395 - 9200558
Alignment:
Q  20 cctaagagtttgaccacattcctgtgatttatttgagagacaacatccacctcattaatgaattgttcaatttggctttcgtctattgttttggactttt 119  Q
    |||| ||||||||| |||||||| ||||||||||| |  | |||| | ||||||||||||||||| ||||||||  || |||| ||| ||||||| ||||    
T  9200395 cctaggagtttgacaacattcctatgatttatttgggtcagaacaactacctcattaatgaattgctcaatttgatttgcgtcaattattttggattttt 9200494  T
Q  120 tgatggcaacaattctcttatcatcaagttcccctttgaaaactgtaccaaaacctcctctacc 183  Q
    | |  || |||||| | ||||||   |   | |||||| |||||||||||||||||||||||||    
T  9200495 ttacagcgacaattttgttatcaggtaaaactcctttgtaaactgtaccaaaacctcctctacc 9200558  T

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Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 122
Target Start/End: Complemental strand, 9118450 - 9118348
Alignment:
Q  20 cctaagagtttgaccacattcctgtgatttatttgagagacaacatccacctcattaatgaattgttcaatttggctttcgtctattgttttggactttt 119  Q
    ||||| |||||||| |||||||| ||||||||||| || | || | | ||||||||||||||||| || |||||  || |||||||| || |||||||||    
T  9118450 cctaaaagtttgacaacattcctatgatttatttgggacagaataactacctcattaatgaattgctcgatttgatttgcgtctattattctggactttt 9118351  T
Q  120 tga 122  Q
    |||    
T  9118350 tga 9118348  T

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Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 9170828 - 9170928
Alignment:
Q  20 cctaagagtttgaccacattcctgtgatttatttgagagacaacatccacctcattaatgaattgttcaatttggctttcgtctattgttttggactttt 119  Q
    |||| ||||||||| |||||||| ||||||||||| |  | |||| | ||||||||||||||||| ||||||||  || |||| ||| ||||||| ||||    
T  9170828 cctaggagtttgacaacattcctatgatttatttgggtcagaacaactacctcattaatgaattgctcaatttgatttgcgtcaattattttggattttt 9170927  T
Q  120 t 120  Q
    |    
T  9170928 t 9170928  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 180
Target Start/End: Original strand, 9162005 - 9162162
Alignment:
Q  23 aagagtttgaccacattcctgtgatttatttgagagacaacatccacctcattaatgaattgttcaatttggctttcgtctattgttttggactttttga 122  Q
    ||||||||||| ||||| || ||||||||||| || | |||| | ||||| |||||||| || ||||||||  || | |||||| ||||||| |||||||    
T  9162005 aagagtttgacaacatttctatgatttatttgggacagaacaactacctcgttaatgaactgctcaatttgatttgcatctattattttggattttttga 9162104  T
Q  123 tggcaacaattctcttatcatcaagttcccctttgaaaactgtaccaaaacctcctct 180  Q
      || || ||| | |||||    |   | |||||||||||||||||||||||||||||    
T  9162105 cagcgacgattttgttatctggtaagactcctttgaaaactgtaccaaaacctcctct 9162162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 132
Target Start/End: Original strand, 9229799 - 9229908
Alignment:
Q  23 aagagtttgaccacattcctgtgatttatttgagagacaacatccacctcattaatgaattgttcaatttggctttcgtctattgttttggactttttga 122  Q
    ||||||||||| ||||| || ||||||||||| || | |||| |||||||||| |||||||| || | |||| |  | || ||| |||||||||| ||||    
T  9229799 aagagtttgacaacatttctatgatttatttgggacaaaacaaccacctcatttatgaattgctctacttgggtggcatccattattttggacttcttga 9229898  T
Q  123 tggcaacaat 132  Q
    | ||||||||    
T  9229899 ttgcaacaat 9229908  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 180
Target Start/End: Original strand, 9156222 - 9156250
Alignment:
Q  152 cctttgaaaactgtaccaaaacctcctct 180  Q
    |||||||||||||||||||||||||||||    
T  9156222 cctttgaaaactgtaccaaaacctcctct 9156250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 124; Significance: 5e-64; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 20 - 187
Target Start/End: Complemental strand, 37567809 - 37567642
Alignment:
Q  20 cctaagagtttgaccacattcctgtgatttatttgagagacaacatccacctcattaatgaattgttcaatttggctttcgtctattgttttggactttt 119  Q
    ||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||||||| |||||||||| |||||||||||||| ||||    
T  37567809 cctaagagtttgaccacattcctatgatttatttgagagacaatgtccacctcattaatgaattgttcattttggctttcatctattgttttggattttt 37567710  T
Q  120 tgatggcaacaattctcttatcatcaagttcccctttgaaaactgtaccaaaacctcctctacctatg 187  Q
    |||| |||||| |||| |||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  37567709 tgatagcaacagttctattatcatctagtttccctttgaaaactgtaccaaaacctcctctacctatg 37567642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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