View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13306_low_5 (Length: 486)
Name: NF13306_low_5
Description: NF13306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13306_low_5 |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 27574427 - 27574778
Alignment:
| Q |
1 |
tataattggatctgaatatgatgaagtgtttgaatttgacaaaatagggggcgatattatcaggcggactgccaggtcttcaggagaaggtatgtaaaaa |
100 |
Q |
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| T |
27574427 |
tataattggatctgaatctgatgaagtgtttgaatttgacaaaatagggggcgatattatcaggcggactgccaggtcttcaggagaaggtatgtaaaaa |
27574526 |
T |
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| Q |
101 |
actggaaacatggattgacttttaattcatctgtcgttagtccacgttgctttgcttcaaattggtgcatttatattttaagttgtgtaaatttttatat |
200 |
Q |
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| T |
27574527 |
actg-------------acttttaattcatctgtcgttagtccacgttgctttgcttcaaattggtgcatttatattttaagttgtgtaaatttttatat |
27574613 |
T |
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| Q |
201 |
gt--agggtgtggcactcacgaaagttcccaaagtgaaattccttataataataggaggggcaaagttcagggcaccttcagtggtagagaaagcatatt |
298 |
Q |
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| T |
27574614 |
gtgtagggtgtggcactcacgaaagttcccaaagtgaaattccttataataataggaggggcaaagttcagggcaccttcagtggtagagaaagcatatt |
27574713 |
T |
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| Q |
299 |
cttctcaaattggttgcccttctcttcattttctaggtacatcatctgcctctctactttcaatttg |
365 |
Q |
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| T |
27574714 |
cttctcaaattggttgcccttctcttcattttctaggtacatcatctgcctctc--ctttcaatttg |
27574778 |
T |
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Target: scaffold0006 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 418
Target Start/End: Original strand, 172079 - 172135
Alignment:
| Q |
362 |
tttgatagtatgaaatcacgttctccccttagatcggtcatgtattttgaatttgat |
418 |
Q |
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| T |
172079 |
tttgatagtaagaaatcccgttctccctttagatcggtcctgtatttagaatctgat |
172135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 418
Target Start/End: Complemental strand, 6926852 - 6926796
Alignment:
| Q |
362 |
tttgatagtatgaaatcacgttctccccttagatcggtcatgtattttgaatttgat |
418 |
Q |
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| T |
6926852 |
tttgatagtaagaaatcccgttctccctttagatcggtcctgtatttagaatctgat |
6926796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 418
Target Start/End: Complemental strand, 502109 - 502053
Alignment:
| Q |
362 |
tttgatagtatgaaatcacgttctccccttagatcggtcatgtattttgaatttgat |
418 |
Q |
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| T |
502109 |
tttgatagtaagaaatcccgttctccctttagatcggtcctgtatttagaatctgat |
502053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 418
Target Start/End: Original strand, 13674465 - 13674521
Alignment:
| Q |
362 |
tttgatagtatgaaatcacgttctccccttagatcggtcatgtattttgaatttgat |
418 |
Q |
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| T |
13674465 |
tttgatagtaagaaatcatgttctccctttagatcggtcctgtatttagaatctgat |
13674521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 362 - 418
Target Start/End: Original strand, 20482749 - 20482805
Alignment:
| Q |
362 |
tttgatagtatgaaatcacgttctccccttagatcggtcatgtattttgaatttgat |
418 |
Q |
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| T |
20482749 |
tttgatagtaagaaatcctgttctccctttagatcggtcctgtatttagaatctgat |
20482805 |
T |
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