View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13306_low_6 (Length: 481)

Name: NF13306_low_6
Description: NF13306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13306_low_6
NF13306_low_6
[»] chr8 (6 HSPs)
chr8 (1-462)||(14003833-14004294)
chr8 (1-460)||(5766512-5766971)
chr8 (311-412)||(17635611-17635712)
chr8 (237-367)||(18314638-18314768)
chr8 (311-412)||(17642890-17642991)
chr8 (240-277)||(17643025-17643062)
[»] chr4 (10 HSPs)
chr4 (62-183)||(1481511-1481632)
chr4 (240-409)||(8186317-8186486)
chr4 (352-456)||(1481684-1481785)
chr4 (66-181)||(8186539-8186654)
chr4 (308-400)||(661855-661947)
chr4 (115-177)||(532630-532692)
chr4 (134-188)||(7225324-7225378)
chr4 (236-276)||(12124517-12124557)
chr4 (138-178)||(21833493-21833533)
chr4 (308-408)||(55907634-55907734)
[»] chr6 (5 HSPs)
chr6 (329-412)||(7132323-7132406)
chr6 (329-412)||(7135246-7135329)
chr6 (329-412)||(7138169-7138252)
chr6 (261-369)||(6403528-6403636)
chr6 (308-412)||(8913375-8913479)
[»] chr2 (1 HSPs)
chr2 (308-408)||(1036570-1036670)
[»] chr1 (2 HSPs)
chr1 (237-393)||(7555124-7555280)
chr1 (138-183)||(19467627-19467672)
[»] chr5 (1 HSPs)
chr5 (240-343)||(29021726-29021829)


Alignment Details
Target: chr8 (Bit Score: 438; Significance: 0; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Original strand, 14003833 - 14004294
Alignment:
Q  1 ttggtttctggcggagagcaagatcaatgcctgcgacggttaattgttcacatctaagcaagatgacctcttggagaaacttgcagttcttgaacaagtg 100  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  14003833 ttggtctctggcggagagcaagatcaacgcctgcgacggttaattgttcacatctaagcaagatgacatcttggagaaacttgcagttcttgaacaagtg 14003932  T
Q  101 agaaagcaaagtgccgttgaggtagccatgataagagagattaaccttgcggagtttgatgagtgctaatgaaagagcctctagtccagtggagaaggta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14003933 agaaagcaaagtgccgttgaggtagccatgataagagagattaaccttgcggagtttgatgagtgctaatgaaagagcctctagtccagtggagaaggta 14004032  T
Q  201 gcacgtgtgtgattaatgattttagaggggtaagcgaggtcgagttcttctagcaaaggaaaacaatcagcaatgagatggagatcagtgctattaagag 300  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14004033 gcatgtgtgtgattaatgattttagaggggtaagcgaggtcgagttcttctagcaaaggaaaacaatcagcaatgagatggagatcagtgctattaagag 14004132  T
Q  301 aattaaggttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgag 400  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  14004133 aattaaggttggaacaaataagtgaggtcaaagttgtaatgttctgagagaaagctcgcaaaccattagcaggaaggatgggttggttggaaagattgag 14004232  T
Q  401 cgatgtgagtttgaacattgggaagctagagatttgagtaagaagtgcatcgaggtcaccat 462  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14004233 cgatgtgagtttgaacattgggaagctagagatttgagtaagaagtgcatcgaggtcaccat 14004294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Complemental strand, 5766971 - 5766512
Alignment:
Q  1 ttggtttctggcggagagcaagatcaatgcctgcgacggttaattgttcacatctaagcaagatgacctcttggagaaacttgcagttcttgaacaagtg 100  Q
    ||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5766971 ttggtttctggaggagagcaagatcaacgcctgcgatggttaattgttcacatctaagcaagatgacctcttggagaaacttgcagttcttgaacaagtg 5766872  T
Q  101 agaaagcaaagtgccgttgaggtagccatgataagagagattaaccttgcggagtttgatgagtgctaatgaaagagcctctagtccagtggagaaggta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5766871 agaaagcaaagtgccgttgaggtagccatgataagagagattaaccttgcggagtttgatgagtgctaatgaaagagcctctagtccagtggagaaggta 5766772  T
Q  201 gcacgtgtgtgattaatgattttagaggggtaagcgaggtcgagttcttctagcaaaggaaaacaatcagcaatgagatggagatcagtgctattaagag 300  Q
    ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||| |||| |||||||||||||||||    
T  5766771 gcatgtgtgtgattaatgattttagaggggtaagcgaggtcaagttcttctagcaaaggaaaagtatcagcaatgaggtggatatcagtgctattaagag 5766672  T
Q  301 aattaaggttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgag 400  Q
    || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5766671 aaataaggttggaacaaataagtgaggtcaaagttgtaatgttctgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgag 5766572  T
Q  401 cgatgtgagtttgaacattgggaagctagagatttgagtaagaagtgcatcgaggtcacc 460  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  5766571 cgatgtgagtttcaacattgggaagctagagatttgagtaagaagtgcatctaggtcacc 5766512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 311 - 412
Target Start/End: Complemental strand, 17635712 - 17635611
Alignment:
Q  311 ggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagt 410  Q
    ||||||| | || ||||||||||||||||| ||||| ||||||||||| || |||||||  |||| | ||||||||||||| |||||||| ||| |||||    
T  17635712 ggaacaagtgagagaggtcaaagttgtaatattccgggagaaagctcgtaacccattagttggaatggtgagttggttggacagattgagtgatatgagt 17635613  T
Q  411 tt 412  Q
    ||    
T  17635612 tt 17635611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 237 - 367
Target Start/End: Complemental strand, 18314768 - 18314638
Alignment:
Q  237 aggtcgagttcttctagcaaaggaaaacaatcagcaatgagatggagatcagtgctattaagagaattaaggttggaacaaataagtgaggtcaaagttg 336  Q
    |||||||||||||| |||||||| |||||||||||||||||   ||||||||||| ||  ||||| | || ||  |||||    ||||||||||||||||    
T  18314768 aggtcgagttcttcgagcaaagggaaacaatcagcaatgaggaagagatcagtgccatggagagattgaatgtaagaacatgagagtgaggtcaaagttg 18314669  T
Q  337 taatgttccgagagaaagctcgcaaaccatt 367  Q
    |||| ||  |||||||| |||| || |||||    
T  18314668 taatattttgagagaaaactcgtaagccatt 18314638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 311 - 412
Target Start/End: Complemental strand, 17642991 - 17642890
Alignment:
Q  311 ggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagt 410  Q
    ||||||| | || ||||||||||||||||| ||| | ||||||||| | || ||||| |  |||| | |||| |||||||| |||||||| |||||||||    
T  17642991 ggaacaagtgagagaggtcaaagttgtaatattctgggagaaagcttgtaacccattggtgggaatggtgagatggttggagagattgagtgatgtgagt 17642892  T
Q  411 tt 412  Q
    ||    
T  17642891 tt 17642890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 17643062 - 17643025
Alignment:
Q  240 tcgagttcttctagcaaaggaaaacaatcagcaatgag 277  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  17643062 tcgagttcttctagcaaagggaaacaatcagcgatgag 17643025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 62 - 183
Target Start/End: Original strand, 1481511 - 1481632
Alignment:
Q  62 gatgacctcttggagaaacttgcagttcttgaacaagtgagaaagcaaagtgccgttgaggtagccatgataagagagattaaccttgcggagtttgatg 161  Q
    |||||||| || |||||||||||||||||||||||| ||| |||||||| || |||||| ||||  ||||| ||||||||||| |||||||||||||| |    
T  1481511 gatgaccttttcgagaaacttgcagttcttgaacaattgaaaaagcaaaatgtcgttgacgtagtaatgatcagagagattaagcttgcggagtttgaag 1481610  T
Q  162 agtgctaatgaaagagcctcta 183  Q
    ||||| ||||||||||||||||    
T  1481611 agtgccaatgaaagagcctcta 1481632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 240 - 409
Target Start/End: Complemental strand, 8186486 - 8186317
Alignment:
Q  240 tcgagttcttctagcaaaggaaaacaatcagcaatgagatggagatcagtgctattaagagaattaaggttggaacaaataagtgaggtcaaagttgtaa 339  Q
    |||||||||||||| |||||||||||||| || |||||   ||  ||||||||||| | ||| | || |||||||||  | |||||||||||||||||||    
T  8186486 tcgagttcttctaggaaaggaaaacaatcggcgatgaggaagatgtcagtgctattgatagattcaatgttggaacatgtgagtgaggtcaaagttgtaa 8186387  T
Q  340 tgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgag 409  Q
    | || || |||| | ||||||| ||||| ||||||| | || ||| ||| || |||||||| ||||||||    
T  8186386 tatttcgggagagaactcgcaatccatttgcaggaatggtgggtttgttagagagattgagtgatgtgag 8186317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 352 - 456
Target Start/End: Original strand, 1481684 - 1481785
Alignment:
Q  352 aagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagtttgaacattgggaagctagagatttgagtaagaagtgcatc 451  Q
    |||||||||| |||||||| |||||| |||||||||| || | ||||||||||||||||||   || |||||| |  |||||||| || ||||| |||||    
T  1481684 aagctcgcaagccattagcgggaaggttgagttggtttgagatattgagcgatgtgagttt---caatgggaaacaggagatttgggtgagaagcgcatc 1481780  T
Q  452 gaggt 456  Q
    |||||    
T  1481781 gaggt 1481785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 66 - 181
Target Start/End: Complemental strand, 8186654 - 8186539
Alignment:
Q  66 acctcttggagaaacttgcagttcttgaacaagtgagaaagcaaagtgccgttgaggtagccatgataagagagattaaccttgcggagtttgatgagtg 165  Q
    ||||||| ||||  ||| || ||||| ||||||||| |||||||  || ||||||  |||  ||||| ||| |||||||||||||| |||||||  ||||    
T  8186654 acctcttcgagatgcttacaattctttaacaagtgaaaaagcaatttgtcgttgatatagttatgattagatagattaaccttgcgaagtttgaaaagtg 8186555  T
Q  166 ctaatgaaagagcctc 181  Q
    | ||||||||||||||    
T  8186554 ccaatgaaagagcctc 8186539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 308 - 400
Target Start/End: Original strand, 661855 - 661947
Alignment:
Q  308 gttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgag 400  Q
    |||| ||||||| || ||||| ||||||||||| |   | ||||||||||||||||||||||| |||| | ||  ||||||||| ||||||||    
T  661855 gttgtaacaaatgagagaggttaaagttgtaatatattgggagaaagctcgcaaaccattagcgggaatggtggtttggttggagagattgag 661947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 177
Target Start/End: Original strand, 532630 - 532692
Alignment:
Q  115 cgttgaggtagccatgataagagagattaaccttgcggagtttgatgagtgctaatgaaagag 177  Q
    |||||| |||| |||||  ||| ||||||||||||||||||||||  |||| |||||||||||    
T  532630 cgttgatgtagtcatgagtagaaagattaaccttgcggagtttgaaaagtgataatgaaagag 532692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 7225378 - 7225324
Alignment:
Q  134 agagagattaaccttgcggagtttgatgagtgctaatgaaagagcctctagtcca 188  Q
    ||||||||||||| | ||||||||||  |||||| ||||||||||||||| ||||    
T  7225378 agagagattaaccctacggagtttgaaaagtgctgatgaaagagcctctactcca 7225324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 236 - 276
Target Start/End: Original strand, 12124517 - 12124557
Alignment:
Q  236 gaggtcgagttcttctagcaaaggaaaacaatcagcaatga 276  Q
    |||||| ||||||||||| ||||| ||||||||||||||||    
T  12124517 gaggtcaagttcttctagtaaagggaaacaatcagcaatga 12124557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 138 - 178
Target Start/End: Complemental strand, 21833533 - 21833493
Alignment:
Q  138 agattaaccttgcggagtttgatgagtgctaatgaaagagc 178  Q
    ||||||||||||||||||||||| ||||| | |||||||||    
T  21833533 agattaaccttgcggagtttgataagtgcaagtgaaagagc 21833493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 308 - 408
Target Start/End: Complemental strand, 55907734 - 55907634
Alignment:
Q  308 gttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtg 407  Q
    |||||||||||| || ||  ||||||||||||| ||  | ||||||||||| || ||| |||| || | |||  |||||||||| ||||||||||| |||    
T  55907734 gttggaacaaatgagagaattcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaagtg 55907635  T
Q  408 a 408  Q
    |    
T  55907634 a 55907634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 412
Target Start/End: Original strand, 7132323 - 7132406
Alignment:
Q  329 caaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagttt 412  Q
    |||||||||||||||  | |||||||||||||| ||||| ||||||| | || |||||||||| | | | ||||||||||||||    
T  7132323 caaagttgtaatgttttgggagaaagctcgcaacccatttgcaggaaaggtgtgttggttggagatactaagcgatgtgagttt 7132406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 412
Target Start/End: Original strand, 7135246 - 7135329
Alignment:
Q  329 caaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagttt 412  Q
    |||||||||||||||  | |||||||||||||| ||||| ||||||| | || |||||||||| | | | ||||||||||||||    
T  7135246 caaagttgtaatgttttgggagaaagctcgcaacccatttgcaggaaaggtgtgttggttggagatactaagcgatgtgagttt 7135329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 412
Target Start/End: Original strand, 7138169 - 7138252
Alignment:
Q  329 caaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagttt 412  Q
    |||||||||||||||  | |||||||||||||| ||||| ||||||| | || |||||||||| | | | ||||||||||||||    
T  7138169 caaagttgtaatgttttgggagaaagctcgcaacccatttgcaggaaaggtgtgttggttggagatactaagcgatgtgagttt 7138252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 261 - 369
Target Start/End: Original strand, 6403528 - 6403636
Alignment:
Q  261 aaacaatcagcaatgagatggagatcagtgctattaagagaattaaggttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgca 360  Q
    |||||||| ||||||||   ||||| || |||||||||||||| || || |||||||  ||| ||||||||||| || |  || || |||||||||||||    
T  6403528 aaacaatcggcaatgagtaagagatgagagctattaagagaatcaatgtcggaacaatcaagagaggtcaaagtagtgacctttcgggagaaagctcgca 6403627  T
Q  361 aaccattag 369  Q
    | |||||||    
T  6403628 acccattag 6403636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 308 - 412
Target Start/End: Complemental strand, 8913479 - 8913375
Alignment:
Q  308 gttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtg 407  Q
    |||||||||| | || ||||||||||||||||| ||   ||| ||| || |||| ||||||||||||| | |   ||||||||| | |||||||||||||    
T  8913479 gttggaacaattgagagaggtcaaagttgtaatctttttagataaaactagcaacccattagcaggaaaggtccattggttggagatattgagcgatgtg 8913380  T
Q  408 agttt 412  Q
    |||||    
T  8913379 agttt 8913375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 308 - 408
Target Start/End: Complemental strand, 1036670 - 1036570
Alignment:
Q  308 gttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtg 407  Q
    |||||||||||| || || |||||||||||||| ||  | ||||||||||| || ||| |||| || | |||  |||||||||| ||||||||||| |||    
T  1036670 gttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaagtg 1036571  T
Q  408 a 408  Q
    |    
T  1036570 a 1036570  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 393
Target Start/End: Original strand, 7555124 - 7555280
Alignment:
Q  237 aggtcgagttcttctagcaaaggaaaacaatcagcaatgagatggagatcagtgctattaagagaattaaggttggaacaaataagtgaggtcaaagttg 336  Q
    |||| ||||||||| |||||||| ||||| |||||||||||    |  ||| ||||||| | |||||  |  ||||||||| | |||||||| |||||||    
T  7555124 aggttgagttcttcgagcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaatccattttggaacaagtgagtgaggttaaagttg 7555223  T
Q  337 taatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaa 393  Q
    |||| ||  | |||||||||||||| ||| | ||||| | | || ||||||||||||    
T  7555224 taatattttgggagaaagctcgcaatccaattgcagggatggtgggttggttggaaa 7555280  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 183
Target Start/End: Complemental strand, 19467672 - 19467627
Alignment:
Q  138 agattaaccttgcggagtttgatgagtgctaatgaaagagcctcta 183  Q
    ||||||||||||||||||||||  ||||| | ||||||||||||||    
T  19467672 agattaaccttgcggagtttgagaagtgcaagtgaaagagcctcta 19467627  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 343
Target Start/End: Original strand, 29021726 - 29021829
Alignment:
Q  240 tcgagttcttctagcaaaggaaaacaatcagcaatgagatggagatcagtgctattaagagaattaaggttggaacaaataagtgaggtcaaagttgtaa 339  Q
    ||||||||||| |||||||| || ||||||||||| |||  ||||| ||||||||| || |  | ||||| | ||||| | || ||||||||||| ||||    
T  29021726 tcgagttcttcgagcaaagggaagcaatcagcaataagaaagagatgagtgctattgagggtttcaaggtggtaacaagtgagagaggtcaaagtagtaa 29021825  T
Q  340 tgtt 343  Q
    ||||    
T  29021826 tgtt 29021829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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