View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13307_high_8 (Length: 343)
Name: NF13307_high_8
Description: NF13307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13307_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 7 - 328
Target Start/End: Complemental strand, 18318213 - 18317892
Alignment:
| Q |
7 |
atacaaagagaaaacagaaagtaagagaatccaaaatggtaaccataaaagcttcttacacagtcacaccaaatgaatcaactccaaagggtagtttatg |
106 |
Q |
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| T |
18318213 |
atacaaagagaaaacagaaagtaagagaatccaaaatggtaaccataaaagcttcttacacaatcacaccaaatgaatcaactccaaagggtagtttatg |
18318114 |
T |
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| Q |
107 |
gttctcagatttagatcaagttgtgcgtctaagccatacaccagttatatacatatacaaaccaaagcagaatcaacaaaacataatcatagaaacctta |
206 |
Q |
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| T |
18318113 |
gttctcagatttagatcaagttgtgcgtctaagccatacaccacttatatacatatacaaaccaaaacagaatcaacaaaacataatcatagaaacctta |
18318014 |
T |
|
| Q |
207 |
aagaactcactcagcaaaatcctagttcattactatcctgtagctggtcgatattgttacacaaaaggtggtagaatagaattgaatctcaatgcaaaag |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
18318013 |
aagaactcactcagcaaaatcctagttcattactatcctgtagctggtcgatattgttacagaaaaggtggtagaatagaattgaatctcaatgcaaaag |
18317914 |
T |
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| Q |
307 |
gagctgttttgatagaagctga |
328 |
Q |
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||||| |||| ||||||||||| |
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| T |
18317913 |
gagctattttaatagaagctga |
18317892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 40 - 328
Target Start/End: Original strand, 18272480 - 18272771
Alignment:
| Q |
40 |
aaatggtaaccataaaagcttcttacacagtcacaccaaatgaatcaactccaaagggtagtttatggttctcagatttagatcaagttgtgcgtctaag |
139 |
Q |
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| T |
18272480 |
aaatggtaaccattcaagcttcttacaatgtgactccaaatgaagtaaccccaaatggtcatttatggctctcagatatagatcaaactgtgcgtttcaa |
18272579 |
T |
|
| Q |
140 |
cc---atacaccagttatatacatatacaaaccaaagcagaatcaacaaaacataatcatagaaaccttaaagaactcactcagcaaaatcctagttcat |
236 |
Q |
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| T |
18272580 |
cctccacacaccactgatctatatctacaaacaaaaccagaaccaaaataacaaaatcatagaaaccttaaagaactcactcagcaaaatcctagttcac |
18272679 |
T |
|
| Q |
237 |
tactatcctgtagctggtcgatattgttacacaaaaggtggtagaatagaattgaatctcaatgcaaaaggagctgttttgatagaagctga |
328 |
Q |
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| T |
18272680 |
tactatcctgtagctggtcgatattcttacacaaaaggcggtagaatataattgaatctcaatgcaaaaggagctattttgatagaagctga |
18272771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 194 - 328
Target Start/End: Complemental strand, 8324175 - 8324041
Alignment:
| Q |
194 |
catagaaaccttaaagaactcactcagcaaaatcctagttcattactatcctgtagctggtcgatattgttacacaaaaggtggtagaatagaattgaat |
293 |
Q |
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|||||||||| ||||||| ||||||||||||||||||||| | |||||||||||||||||||| |||||||||| | |||||||||||||||| |||||| |
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| T |
8324175 |
catagaaaccctaaagaattcactcagcaaaatcctagtttactactatcctgtagctggtcgttattgttacaaagaaggtggtagaatagagttgaat |
8324076 |
T |
|
| Q |
294 |
ctcaatgcaaaaggagctgttttgatagaagctga |
328 |
Q |
| |
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| T |
8324075 |
ctcaatgcaaaaggtgctattttgcttgaagctga |
8324041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 222 - 307
Target Start/End: Complemental strand, 19996359 - 19996274
Alignment:
| Q |
222 |
aaaatcctagttcattactatcctgtagctggtcgatattgttacacaaaaggtggtagaatagaattgaatctcaatgcaaaagg |
307 |
Q |
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|||||||||||||| |||||||| ||||||||| ||||||||||||| ||||||| ||| |||| |||||| |||||||||||| |
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| T |
19996359 |
aaaatcctagttcactactatccattagctggtcattattgttacacaagaggtggtcgaagagaactgaatcgcaatgcaaaagg |
19996274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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