View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13307_high_9 (Length: 328)

Name: NF13307_high_9
Description: NF13307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13307_high_9
NF13307_high_9
[»] chr2 (50 HSPs)
chr2 (201-320)||(8390268-8390387)
chr2 (207-323)||(23078596-23078709)
chr2 (217-323)||(14699129-14699235)
chr2 (17-89)||(36809245-36809317)
chr2 (17-91)||(30275502-30275575)
chr2 (217-323)||(31055902-31056004)
chr2 (217-323)||(33528756-33528858)
chr2 (17-91)||(38006096-38006170)
chr2 (217-320)||(10445579-10445679)
chr2 (208-323)||(34388719-34388830)
chr2 (17-91)||(25869951-25870025)
chr2 (17-91)||(25873319-25873393)
chr2 (17-91)||(26358788-26358862)
chr2 (217-320)||(20522083-20522182)
chr2 (207-323)||(36757888-36757998)
chr2 (207-323)||(42039795-42039906)
chr2 (217-320)||(8039923-8040022)
chr2 (217-320)||(17865066-17865165)
chr2 (17-91)||(25139850-25139924)
chr2 (21-91)||(25821731-25821801)
chr2 (17-74)||(10600096-10600153)
chr2 (207-323)||(10707376-10707490)
chr2 (220-320)||(34682472-34682568)
chr2 (208-320)||(13569191-13569300)
chr2 (231-323)||(21629810-21629897)
chr2 (150-206)||(25139984-25140040)
chr2 (17-91)||(16788504-16788578)
chr2 (217-323)||(16940344-16940446)
chr2 (217-323)||(17011009-17011111)
chr2 (219-321)||(33117998-33118096)
chr2 (17-70)||(29439712-29439765)
chr2 (150-210)||(3874478-3874538)
chr2 (150-207)||(13972757-13972814)
chr2 (150-206)||(5665830-5665886)
chr2 (150-206)||(10599951-10600007)
chr2 (150-206)||(43722904-43722960)
chr2 (217-259)||(28770909-28770951)
chr2 (207-255)||(2869818-2869867)
chr2 (150-206)||(5104953-5105007)
chr2 (150-206)||(38014636-38014692)
chr2 (207-250)||(28259302-28259345)
chr2 (217-264)||(39482846-39482893)
chr2 (274-320)||(3491616-3491662)
chr2 (217-259)||(5699706-5699748)
chr2 (150-184)||(13136784-13136818)
chr2 (274-320)||(25398358-25398404)
chr2 (274-320)||(25403496-25403542)
chr2 (150-184)||(31430582-31430616)
chr2 (150-206)||(6825974-6826030)
chr2 (167-207)||(11059029-11059069)
[»] chr6 (25 HSPs)
chr6 (207-323)||(5017593-5017709)
chr6 (17-89)||(34501532-34501604)
chr6 (17-88)||(9953155-9953226)
chr6 (201-323)||(18232705-18232824)
chr6 (217-323)||(10077300-10077402)
chr6 (19-91)||(5739001-5739073)
chr6 (217-319)||(22963563-22963662)
chr6 (217-319)||(23824731-23824830)
chr6 (150-206)||(9953036-9953092)
chr6 (17-89)||(23379623-23379695)
chr6 (17-89)||(23388962-23389034)
chr6 (217-323)||(31979373-31979475)
chr6 (223-323)||(5572737-5572833)
chr6 (207-323)||(5757603-5757713)
chr6 (201-319)||(21801467-21801583)
chr6 (274-323)||(31086650-31086699)
chr6 (150-206)||(28666120-28666176)
chr6 (217-264)||(4629868-4629915)
chr6 (217-320)||(31936451-31936549)
chr6 (17-91)||(2371529-2371603)
chr6 (150-206)||(10289186-10289242)
chr6 (207-323)||(21355898-21356008)
chr6 (58-90)||(13004611-13004643)
chr6 (274-320)||(26258187-26258233)
chr6 (167-207)||(14968782-14968822)
[»] scaffold0080 (2 HSPs)
scaffold0080 (17-91)||(26361-26435)
scaffold0080 (150-206)||(26253-26310)
[»] chr1 (35 HSPs)
chr1 (17-91)||(2793415-2793489)
chr1 (17-91)||(1951155-1951229)
chr1 (17-88)||(49499378-49499449)
chr1 (201-323)||(40816850-40816970)
chr1 (217-323)||(775532-775634)
chr1 (17-91)||(29644118-29644192)
chr1 (150-207)||(29644252-29644309)
chr1 (217-320)||(27104507-27104602)
chr1 (217-323)||(16124652-16124754)
chr1 (217-323)||(47098959-47099060)
chr1 (17-91)||(42021838-42021913)
chr1 (217-323)||(29651670-29651773)
chr1 (217-323)||(47102976-47103077)
chr1 (220-321)||(19072788-19072886)
chr1 (220-321)||(19120678-19120776)
chr1 (26-91)||(34733082-34733147)
chr1 (207-323)||(26645023-26645134)
chr1 (217-320)||(47704071-47704171)
chr1 (217-264)||(13598313-13598360)
chr1 (201-323)||(21536689-21536806)
chr1 (150-207)||(2404721-2404778)
chr1 (207-248)||(37069700-37069741)
chr1 (217-264)||(32889353-32889400)
chr1 (274-320)||(3281571-3281617)
chr1 (207-249)||(3281637-3281679)
chr1 (278-323)||(37069628-37069673)
chr1 (151-207)||(21019313-21019368)
chr1 (151-206)||(41059178-41059234)
chr1 (221-255)||(9023971-9024005)
chr1 (274-320)||(19359033-19359079)
chr1 (275-320)||(19361624-19361669)
chr1 (275-320)||(19380264-19380309)
chr1 (167-207)||(37640981-37641021)
chr1 (150-206)||(45961651-45961707)
chr1 (208-259)||(48382607-48382659)
[»] chr7 (38 HSPs)
chr7 (207-323)||(49091522-49091634)
chr7 (217-323)||(9235690-9235794)
chr7 (217-323)||(4796802-4796907)
chr7 (17-91)||(8276128-8276202)
chr7 (217-323)||(23403148-23403250)
chr7 (17-91)||(26556626-26556700)
chr7 (18-91)||(2442089-2442161)
chr7 (150-206)||(8276012-8276068)
chr7 (17-89)||(10431504-10431576)
chr7 (217-317)||(29159669-29159765)
chr7 (217-323)||(20283949-20284051)
chr7 (207-264)||(55863-55920)
chr7 (20-89)||(4542192-4542260)
chr7 (217-320)||(9185298-9185396)
chr7 (217-320)||(9190143-9190241)
chr7 (220-321)||(33332588-33332685)
chr7 (17-74)||(45287947-45288004)
chr7 (17-74)||(45291283-45291340)
chr7 (217-323)||(46516445-46516548)
chr7 (217-323)||(21988766-21988869)
chr7 (274-323)||(35960674-35960723)
chr7 (150-207)||(45288082-45288139)
chr7 (150-206)||(9865586-9865642)
chr7 (150-206)||(45291418-45291474)
chr7 (217-323)||(2647831-2647934)
chr7 (150-207)||(9273978-9274035)
chr7 (150-211)||(20081584-20081645)
chr7 (217-323)||(21983142-21983245)
chr7 (207-323)||(2479199-2479309)
chr7 (275-320)||(55802-55847)
chr7 (154-207)||(4596872-4596925)
chr7 (207-323)||(47263540-47263650)
chr7 (150-206)||(17729973-17730029)
chr7 (217-320)||(2580251-2580349)
chr7 (207-250)||(44848809-44848852)
chr7 (150-184)||(4694745-4694779)
chr7 (274-320)||(18413506-18413552)
chr7 (150-206)||(9080376-9080432)
[»] chr8 (36 HSPs)
chr8 (17-88)||(5540805-5540876)
chr8 (17-91)||(25595494-25595568)
chr8 (17-91)||(45156728-45156802)
chr8 (17-91)||(25228128-25228202)
chr8 (17-91)||(25592309-25592383)
chr8 (17-91)||(43682607-43682681)
chr8 (150-207)||(5540939-5540996)
chr8 (17-91)||(17895327-17895402)
chr8 (17-80)||(20520079-20520142)
chr8 (150-208)||(5981164-5981222)
chr8 (207-320)||(6127082-6127193)
chr8 (217-323)||(9765955-9766057)
chr8 (17-91)||(18722120-18722193)
chr8 (150-206)||(14420864-14420920)
chr8 (16-91)||(14420980-14421055)
chr8 (217-320)||(19752529-19752627)
chr8 (217-320)||(26403365-26403464)
chr8 (217-323)||(5702618-5702720)
chr8 (17-91)||(10663127-10663201)
chr8 (17-91)||(33878048-33878122)
chr8 (207-323)||(4455888-4455999)
chr8 (150-206)||(45156862-45156918)
chr8 (207-250)||(19175880-19175923)
chr8 (217-255)||(4696731-4696769)
chr8 (150-184)||(12582240-12582274)
chr8 (17-91)||(30640625-30640699)
chr8 (150-206)||(18826778-18826834)
chr8 (150-206)||(25228016-25228070)
chr8 (207-250)||(7412269-7412312)
chr8 (274-320)||(26287766-26287812)
chr8 (274-320)||(26313017-26313063)
chr8 (274-320)||(31071416-31071462)
chr8 (150-206)||(19792926-19792983)
chr8 (231-263)||(7493210-7493242)
chr8 (167-207)||(22223291-22223331)
chr8 (167-207)||(22229633-22229673)
[»] chr4 (61 HSPs)
chr4 (17-91)||(5721781-5721855)
chr4 (17-89)||(19861097-19861169)
chr4 (207-323)||(38152563-38152677)
chr4 (217-323)||(5269326-5269431)
chr4 (21-91)||(15431280-15431350)
chr4 (21-91)||(15437894-15437964)
chr4 (17-91)||(18910720-18910794)
chr4 (217-323)||(25862157-25862259)
chr4 (17-91)||(33410772-33410846)
chr4 (207-320)||(3777413-3777522)
chr4 (219-323)||(54867042-54867144)
chr4 (17-88)||(3798606-3798677)
chr4 (17-88)||(5680588-5680659)
chr4 (217-323)||(10047239-10047341)
chr4 (150-208)||(14571024-14571082)
chr4 (17-91)||(19865453-19865527)
chr4 (150-206)||(5680469-5680525)
chr4 (217-323)||(6743550-6743657)
chr4 (17-91)||(5669744-5669818)
chr4 (217-323)||(42599709-42599814)
chr4 (17-91)||(49269851-49269925)
chr4 (26-91)||(53093837-53093902)
chr4 (207-323)||(16630805-16630917)
chr4 (216-323)||(16624143-16624246)
chr4 (17-91)||(9717067-9717141)
chr4 (207-323)||(5396797-5396911)
chr4 (17-70)||(37104071-37104124)
chr4 (19-91)||(40617624-40617696)
chr4 (217-320)||(3796655-3796755)
chr4 (220-323)||(5147537-5147636)
chr4 (21-91)||(12237470-12237540)
chr4 (217-320)||(24333674-24333771)
chr4 (220-316)||(39245860-39245953)
chr4 (152-208)||(49269733-49269789)
chr4 (220-323)||(5143119-5143218)
chr4 (150-209)||(52007375-52007434)
chr4 (150-207)||(24045001-24045058)
chr4 (150-206)||(53010402-53010458)
chr4 (150-209)||(3718333-3718392)
chr4 (207-245)||(8689609-8689647)
chr4 (152-206)||(12782106-12782160)
chr4 (150-207)||(27013228-27013286)
chr4 (150-184)||(40794214-40794248)
chr4 (207-259)||(37781783-37781836)
chr4 (150-206)||(29323979-29324035)
chr4 (150-206)||(44809848-44809904)
chr4 (150-207)||(15430709-15430767)
chr4 (150-207)||(15437323-15437381)
chr4 (157-207)||(19826700-19826750)
chr4 (150-184)||(21419001-21419035)
chr4 (274-320)||(28468714-28468760)
chr4 (274-320)||(31985820-31985866)
chr4 (150-184)||(34320788-34320822)
chr4 (274-323)||(1983487-1983536)
chr4 (217-262)||(4956102-4956147)
chr4 (157-206)||(19819950-19819999)
chr4 (150-206)||(27677909-27677966)
chr4 (274-320)||(36315398-36315446)
chr4 (274-320)||(36329607-36329655)
chr4 (150-206)||(44164001-44164058)
chr4 (166-206)||(48636709-48636749)
[»] chr3 (63 HSPs)
chr3 (17-91)||(18645551-18645625)
chr3 (207-320)||(8370602-8370711)
chr3 (207-323)||(27038150-27038262)
chr3 (207-323)||(30709906-30710018)
chr3 (17-91)||(538131-538205)
chr3 (17-91)||(10884134-10884208)
chr3 (217-323)||(40592908-40593010)
chr3 (150-207)||(16185600-16185657)
chr3 (207-323)||(27026805-27026917)
chr3 (21-91)||(35411793-35411863)
chr3 (17-91)||(6445471-6445546)
chr3 (217-321)||(26298844-26298950)
chr3 (220-323)||(48438074-48438173)
chr3 (21-88)||(52198424-52198491)
chr3 (17-91)||(6922006-6922080)
chr3 (17-91)||(23299363-23299437)
chr3 (207-321)||(39040108-39040216)
chr3 (227-320)||(47924007-47924093)
chr3 (21-74)||(53815105-53815158)
chr3 (17-86)||(54736661-54736730)
chr3 (208-259)||(16264269-16264320)
chr3 (17-91)||(16185466-16185540)
chr3 (150-212)||(34984702-34984764)
chr3 (210-264)||(35925397-35925451)
chr3 (150-206)||(35411676-35411733)
chr3 (17-70)||(55032747-55032800)
chr3 (150-206)||(31548551-31548607)
chr3 (17-91)||(28265116-28265191)
chr3 (217-316)||(40844519-40844614)
chr3 (222-320)||(3716132-3716226)
chr3 (217-323)||(6794838-6794939)
chr3 (225-323)||(36028965-36029059)
chr3 (150-207)||(19302308-19302365)
chr3 (150-206)||(53814971-53815027)
chr3 (150-206)||(54460367-54460423)
chr3 (217-320)||(1417129-1417227)
chr3 (150-205)||(9380012-9380067)
chr3 (217-323)||(1417615-1417716)
chr3 (217-323)||(24695289-24695390)
chr3 (274-320)||(47649604-47649650)
chr3 (207-255)||(25929556-25929605)
chr3 (220-264)||(3328484-3328528)
chr3 (150-206)||(16243166-16243222)
chr3 (40-91)||(9380147-9380198)
chr3 (217-264)||(18553008-18553055)
chr3 (150-184)||(10880798-10880832)
chr3 (274-320)||(33386844-33386890)
chr3 (150-184)||(43808900-43808934)
chr3 (150-206)||(29344716-29344773)
chr3 (150-206)||(19305491-19305547)
chr3 (150-206)||(41976321-41976377)
chr3 (224-255)||(25795704-25795735)
chr3 (207-250)||(27975067-27975110)
chr3 (17-91)||(54460492-54460566)
chr3 (285-323)||(3323752-3323790)
chr3 (217-255)||(8126625-8126663)
chr3 (17-55)||(17532527-17532565)
chr3 (274-320)||(27452822-27452868)
chr3 (274-320)||(32143186-32143232)
chr3 (217-255)||(37466215-37466253)
chr3 (150-184)||(54736794-54736828)
chr3 (158-209)||(23299504-23299556)
chr3 (276-320)||(27975129-27975173)
[»] chr5 (45 HSPs)
chr5 (207-323)||(14520089-14520201)
chr5 (17-91)||(32837199-32837273)
chr5 (17-91)||(42061602-42061676)
chr5 (17-91)||(21336531-21336605)
chr5 (17-91)||(37214882-37214956)
chr5 (207-264)||(12084301-12084358)
chr5 (150-207)||(22937999-22938056)
chr5 (150-207)||(43490792-43490849)
chr5 (18-91)||(43490909-43490982)
chr5 (150-206)||(32837083-32837139)
chr5 (150-206)||(37214766-37214822)
chr5 (217-323)||(19588606-19588708)
chr5 (220-323)||(28832120-28832218)
chr5 (17-91)||(21827830-21827904)
chr5 (217-323)||(24553641-24553743)
chr5 (17-91)||(39191447-39191521)
chr5 (17-89)||(28441991-28442063)
chr5 (217-320)||(17004095-17004193)
chr5 (220-323)||(42127548-42127646)
chr5 (217-323)||(11181967-11182071)
chr5 (17-91)||(22937865-22937939)
chr5 (17-91)||(31862988-31863062)
chr5 (17-74)||(28788210-28788267)
chr5 (150-206)||(7270241-7270297)
chr5 (150-208)||(18031708-18031766)
chr5 (17-70)||(14376665-14376717)
chr5 (217-320)||(3880166-3880262)
chr5 (150-187)||(2836699-2836736)
chr5 (207-320)||(36932475-36932583)
chr5 (207-323)||(9353457-9353567)
chr5 (274-320)||(15464396-15464442)
chr5 (150-207)||(14016980-14017037)
chr5 (150-182)||(4100381-4100413)
chr5 (150-206)||(17747617-17747673)
chr5 (151-206)||(21827985-21828041)
chr5 (150-206)||(28788345-28788401)
chr5 (220-320)||(31300734-31300829)
chr5 (225-259)||(11917115-11917149)
chr5 (150-184)||(30065584-30065618)
chr5 (274-320)||(38192036-38192082)
chr5 (274-320)||(38219261-38219307)
chr5 (150-184)||(39191353-39191387)
chr5 (150-206)||(21336685-21336742)
chr5 (157-206)||(25329456-25329505)
chr5 (167-207)||(28563283-28563323)
[»] scaffold0005 (2 HSPs)
scaffold0005 (17-89)||(291081-291153)
scaffold0005 (150-208)||(246294-246352)
[»] scaffold0035 (1 HSPs)
scaffold0035 (17-91)||(61713-61787)
[»] scaffold0036 (1 HSPs)
scaffold0036 (207-323)||(85545-85656)
[»] scaffold0015 (2 HSPs)
scaffold0015 (150-206)||(197242-197298)
scaffold0015 (21-81)||(197357-197417)
[»] scaffold0006 (2 HSPs)
scaffold0006 (217-323)||(2352-2454)
scaffold0006 (217-264)||(5598-5645)
[»] scaffold1993 (1 HSPs)
scaffold1993 (150-206)||(1045-1101)
[»] scaffold0087 (2 HSPs)
scaffold0087 (207-323)||(44086-44196)
scaffold0087 (207-323)||(36958-37069)
[»] scaffold0520 (1 HSPs)
scaffold0520 (150-207)||(4824-4881)
[»] scaffold0757 (1 HSPs)
scaffold0757 (150-206)||(4563-4619)
[»] scaffold0270 (6 HSPs)
scaffold0270 (17-91)||(4229-4304)
scaffold0270 (17-91)||(11359-11434)
scaffold0270 (17-91)||(869-944)
scaffold0270 (150-207)||(1004-1061)
scaffold0270 (150-182)||(4364-4396)
scaffold0270 (150-182)||(11494-11526)
[»] scaffold0148 (1 HSPs)
scaffold0148 (217-264)||(10644-10691)
[»] scaffold1805 (1 HSPs)
scaffold1805 (274-323)||(1268-1317)
[»] scaffold0381 (1 HSPs)
scaffold0381 (150-207)||(6497-6555)
[»] scaffold0176 (1 HSPs)
scaffold0176 (217-323)||(17126-17225)
[»] scaffold0098 (1 HSPs)
scaffold0098 (274-323)||(45115-45164)
[»] scaffold0188 (2 HSPs)
scaffold0188 (274-320)||(18139-18185)
scaffold0188 (274-320)||(24232-24278)
[»] scaffold0140 (1 HSPs)
scaffold0140 (274-320)||(8607-8653)
[»] scaffold0184 (1 HSPs)
scaffold0184 (208-249)||(29608-29649)
[»] scaffold0078 (1 HSPs)
scaffold0078 (208-249)||(43195-43236)


Alignment Details
Target: chr2 (Bit Score: 84; Significance: 7e-40; HSPs: 50)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 201 - 320
Target Start/End: Original strand, 8390268 - 8390387
Alignment:
Q  201 tcatcacttatctttgtgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatc 300  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||        |||||||||| ||||||||||||||||    
T  8390268 tcatcgcttatctttgtgctttgattatgcttgtggtgttgctctacacttagatctaggtctggtttttgttgttgttgttgtttggatacactttatc 8390367  T
Q  301 cattgattaccacttccttt 320  Q
    ||||||||||||||||||||    
T  8390368 cattgattaccacttccttt 8390387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 207 - 323
Target Start/End: Original strand, 23078596 - 23078709
Alignment:
Q  207 cttatctttgtgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattga 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||         |||||||||||||||| ||||||||  ||||||    
T  23078596 cttatctttgtgctttgattatgcttgtggtgttgctctacacttagatctaggtatg---ttttttgttgttgttgcttggagacactttacacattga 23078692  T
Q  307 ttaccacttcctttgct 323  Q
    |||||||||||||||||    
T  23078693 ttaccacttcctttgct 23078709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 217 - 323
Target Start/End: Original strand, 14699129 - 14699235
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttc 316  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||         |||||||||||||||| |||||||||| |||||||||||||||    
T  14699129 tgctttgattatgcttgtggtgttgctctacacttagatttaggtctgctttttgttgttgttgttgcttggagacactttatctattgattaccacttc 14699228  T
Q  317 ctttgct 323  Q
    |||||||    
T  14699229 ctttgct 14699235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 36809245 - 36809317
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacac 89  Q
    ||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||    
T  36809245 cacgttttaaccaatgtcgaatgaatctcatcctgtgctccaaatcgtgacacgttttcaacaatcgtgacac 36809317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 30275502 - 30275575
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacacga 91  Q
    |||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||    
T  30275502 cacgttttaaccaatgtcgaatgaac-tcatcctacgctccaaatcgtgacacgttttcaacaatcgtgacacga 30275575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 217 - 323
Target Start/End: Complemental strand, 31056004 - 31055902
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttc 316  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||         |||||||||||||||| |||||||||| |||||||||||||||    
T  31056004 tgctttgattatgcttgtggtgttgctctacacttagatttaggtctg----tttttgttgttgttgcttggagacactttatctattgattaccacttc 31055909  T
Q  317 ctttgct 323  Q
    |||||||    
T  31055908 ctttgct 31055902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 217 - 323
Target Start/End: Original strand, 33528756 - 33528858
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttc 316  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||         |||||||||||||||  ||||||||||||||||||||||||||    
T  33528756 tgctttgattatgcttgtggtgttgctctacatttagatctaggtctg----tttttgttgttgttgcttggggacactttatccattgattaccacttc 33528851  T
Q  317 ctttgct 323  Q
    |||||||    
T  33528852 ctttgct 33528858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 38006096 - 38006170
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacacga 91  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||| ||||||    
T  38006096 cacgttttaaccaatgtcgaatgaacctcatcctgtgctccaaatcgtgacacgttttcgacaatcgtcacacga 38006170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 217 - 320
Target Start/End: Original strand, 10445579 - 10445679
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttc 316  Q
    ||||||||||||||||||||| ||||||||||||||||| ||| ||||         |||||||||||||||| ||||||||||||||||||||||||||    
T  10445579 tgctttgattatgcttgtggttttgctctacacttagatttaggtctg---ttttttgttgttgttgcttggagacactttatccattgattaccacttc 10445675  T
Q  317 cttt 320  Q
    ||||    
T  10445676 cttt 10445679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 208 - 323
Target Start/End: Complemental strand, 34388830 - 34388719
Alignment:
Q  208 ttatctttgtgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgat 307  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||         |||||||||||||| | ||||||||   ||||||    
T  34388830 ttatctttgtgctttgattttgcttgtggtgttgctctacacttagatctaggtctg----tttttgttgttgttgcttgaagacactttacatattgat 34388735  T
Q  308 taccacttcctttgct 323  Q
    ||||||||||||||||    
T  34388734 taccacttcctttgct 34388719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 25870025 - 25869951
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacacga 91  Q
    |||||||||| ||||||||||||||| ||||||| |||| ||||||||||||||||||| |||||||||||||||    
T  25870025 cacgttttaatcaatgtcgaatgaacttcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacga 25869951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 25873393 - 25873319
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacacga 91  Q
    |||| ||||||||||||||||||||||||||||| |||| |||||| |||||||||||| |||||||||||||||    
T  25873393 cacggtttaaccaatgtcgaatgaacctcatcctgtgctccaaatcatgacacgttttcgacaatcgtgacacga 25873319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 26358862 - 26358788
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacacga 91  Q
    |||| ||||||||||| ||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||    
T  26358862 cacgatttaaccaatgccgaatgaacctcatcctgtgctccaaatcgtgccacgttttcaacaatcgtgacacga 26358788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 217 - 320
Target Start/End: Complemental strand, 20522182 - 20522083
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttc 316  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||          |||||| ||||||||| ||||||||||||||||||||||||||    
T  20522182 tgctttgattatgcttgtggtgttgctctacacttagatctatgtct----ttttttgttgtttttgcttggagacactttatccattgattaccacttc 20522087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 207 - 323
Target Start/End: Original strand, 36757888 - 36757998
Alignment:
Q  207 cttatctttgtgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattga 306  Q
    ||||||||||||||||| |||||||||||||||||||||||||| || ||||| ||||         |||||||||||||||| ||||||||  ||||||    
T  36757888 cttatctttgtgctttgtttatgcttgtggtgttgctctacactaag-tctaggtctg-----ttttgttgttgttgcttggagacactttacacattga 36757981  T
Q  307 ttaccacttcctttgct 323  Q
    |||||||||||||||||    
T  36757982 ttaccacttcctttgct 36757998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 207 - 323
Target Start/End: Original strand, 42039795 - 42039906
Alignment:
Q  207 cttatctttgtgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattga 306  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| |||||| | ||         |||||||||||||||| ||||||||  ||||||    
T  42039795 cttatctttgtgctttgtttatgcttgtggtgttgctctacactta-atctaggtatg----tttttgttgttgttgcttggagacactttacacattga 42039889  T
Q  307 ttaccacttcctttgct 323  Q
    |||||||||||||||||    
T  42039890 ttaccacttcctttgct 42039906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 217 - 320
Target Start/End: Complemental strand, 8040022 - 8039923
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttc 316  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||         |||||||||||||| | |||||||||| |||||||||||||||    
T  8040022 tgctttgattatgcttgtggtgttgctctacacttagatttaggtctg----tttttgttgttgttgcttgaagacactttatctattgattaccacttc 8039927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 217 - 320
Target Start/End: Complemental strand, 17865165 - 17865066
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttc 316  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||         |||||||||| ||||| ||| ||||||||||||||||||||||    
T  17865165 tgctttgattatgcttgtggtgttgctctacacttagatctaggtatg----tttttgttgttgttggttggagacattttatccattgattaccacttc 17865070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 25139850 - 25139924
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacacga 91  Q
    ||||||||||| |||||| ||||||||||||| | |||| |||||||||||||||| ||||||||||||||||||    
T  25139850 cacgttttaactaatgtctaatgaacctcatcttgtgctccaaatcgtgacacgttgtcaacaatcgtgacacga 25139924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 25821731 - 25821801
Alignment:
Q  21 ttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacacga 91  Q
    |||||||||||||||||||||||||||||| || | ||||||||||||| |||||||||||| ||||||||    
T  25821731 ttttaaccaatgtcgaatgaacctcatcctgtgttccaaatcgtgacaccttttcaacaatcttgacacga 25821801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 10600153 - 10600096
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgtttt 74  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  10600153 cacgttttaaccaatgtcgaatgaacctcatcctatgttccaaatcgtgacacgtttt 10600096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 207 - 323
Target Start/End: Original strand, 10707376 - 10707490
Alignment:
Q  207 cttatctttgtgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattga 306  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||| | |          |||||||||||||||| ||||||||  ||||||    
T  10707376 cttatctttgtgctttgattatgcttgcagtgttgctctacacttagatctaggtat--attttcttgttgttgttgcttggagacactttacacattga 10707473  T
Q  307 ttaccacttcctttgct 323  Q
    |||||||||| ||||||    
T  10707474 ttaccacttcttttgct 10707490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 220 - 320
Target Start/End: Original strand, 34682472 - 34682568
Alignment:
Q  220 tttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttcctt 319  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||         |||||||||||||||| |||||||||| |||||||||||||| |||    
T  34682472 tttgattatgcttgtggtgttgctctacacttagatttaggtctg----tttttgttgttgttgcttggagacactttatctattgattaccactttctt 34682567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 208 - 320
Target Start/End: Complemental strand, 13569300 - 13569191
Alignment:
Q  208 ttatctttgtgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgat 307  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||||||   |||         |||||||||| ||||| ||||||||  |||||||    
T  13569300 ttatctttgtgctttgattatgcttgtggtgtttctctatacttagatctaagcctg---ttttttgttgttgttgtttggagacactttacacattgat 13569204  T
Q  308 taccacttccttt 320  Q
    |||||||||||||    
T  13569203 taccacttccttt 13569191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 231 - 323
Target Start/End: Complemental strand, 21629897 - 21629810
Alignment:
Q  231 ttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttcctttgct 323  Q
    |||||||| |||||||||||||||||||| ||||         |||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  21629897 ttgtggtgctgctctacacttagatctaggtctg-----ttttgttgttgttgcttggagacactttatctattgattaccacttcctttgct 21629810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 25139984 - 25140040
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 206  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||    
T  25139984 tgaactcaaaaatatcataaaaaaactctaaaattgtggaatgactgactgtcatca 25140040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 16788578 - 16788504
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacacga 91  Q
    ||||||||||||||| |||||| |||  ||||||  |||  ||||||||||||||||||||||||||||||||||    
T  16788578 cacgttttaaccaatatcgaataaactccatcctgcgctctaaatcgtgacacgttttcaacaatcgtgacacga 16788504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 217 - 323
Target Start/End: Original strand, 16940344 - 16940446
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttc 316  Q
    |||||||||||||||| |||||| ||||| ||||||||||||| ||||         ||||||||||| | || ||||||||| ||||||||||||||||    
T  16940344 tgctttgattatgcttttggtgtcgctctgcacttagatctaggtctg----tttttgttgttgttgcatagagacactttattcattgattaccacttc 16940439  T
Q  317 ctttgct 323  Q
    |||||||    
T  16940440 ctttgct 16940446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 217 - 323
Target Start/End: Original strand, 17011009 - 17011111
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttc 316  Q
    |||||||||||||||| |||||| ||||| ||||||||||||| ||||         ||||||||||| | || ||||||||| ||||||||||||||||    
T  17011009 tgctttgattatgcttttggtgtcgctctgcacttagatctaggtctg----tttttgttgttgttgcatagagacactttattcattgattaccacttc 17011104  T
Q  317 ctttgct 323  Q
    |||||||    
T  17011105 ctttgct 17011111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 321
Target Start/End: Complemental strand, 33118096 - 33117998
Alignment:
Q  219 ctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttcct 318  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||         ||||||| || ||| | |||||||||| |||||||||||||||||    
T  33118096 ctttgattatgcttgtggtgttgctctacacttagatttaggtctg----tttttgttgttgatgtttgaagacactttatctattgattaccacttcct 33118001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 29439765 - 29439712
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacg 70  Q
    ||||||||||||||| |||||||||| ||||||| |||||||||||||||||||    
T  29439765 cacgttttaaccaatatcgaatgaacttcatcctgtgcttcaaatcgtgacacg 29439712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 150 - 210
Target Start/End: Complemental strand, 3874538 - 3874478
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatcactta 210  Q
    |||||||||||||||| ||||||||||||||||||   ||||||| |||||||||||||||    
T  3874538 tgaactcaaaaatatcctaaaaagactctaaaaataatgaatgactgactgtcatcactta 3874478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 13972757 - 13972814
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatcac 207  Q
    |||||||||||||||||||||||||||||||||||   ||||||  ||||||||||||    
T  13972757 tgaactcaaaaatatcataaaaagactctaaaaataacgaatgattgactgtcatcac 13972814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 5665886 - 5665830
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 206  Q
    |||||||||||||||||||||||||||||||||||   ||||||  |||||||||||    
T  5665886 tgaactcaaaaatatcataaaaagactctaaaaatagcgaatgattgactgtcatca 5665830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 10600007 - 10599951
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 206  Q
    ||||||||||||||||||||||||| |||||||||   ||||||| |||||||||||    
T  10600007 tgaactcaaaaatatcataaaaagattctaaaaatagtgaatgactgactgtcatca 10599951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 43722960 - 43722904
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 206  Q
    |||||||||||||||||||||||||||||||||||   ||||||  |||||||||||    
T  43722960 tgaactcaaaaatatcataaaaagactctaaaaataacgaatgattgactgtcatca 43722904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 259
Target Start/End: Original strand, 28770909 - 28770951
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctag 259  Q
    |||||||||||||||||||||||||||  ||||||||||||||    
T  28770909 tgctttgattatgcttgtggtgttgcttcacacttagatctag 28770951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 2869818 - 2869867
Alignment:
Q  207 cttatctttgt-gctttgattatgcttgtggtgttgctctacacttagat 255  Q
    ||||||||||| ||||||| ||||||| ||||||||||||||||||||||    
T  2869818 cttatctttgttgctttgaatatgcttatggtgttgctctacacttagat 2869867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 5105007 - 5104953
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 206  Q
    ||||||||||||||||||||||| |||||||||| || ||||||| |||||||||||    
T  5105007 tgaactcaaaaatatcataaaaaaactctaaaaa-gt-gaatgactgactgtcatca 5104953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 38014692 - 38014636
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 206  Q
    ||||||||||| |||||||||||||||||||||||    |||||| |||||||||||    
T  38014692 tgaactcaaaattatcataaaaagactctaaaaatagcaaatgactgactgtcatca 38014636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 207 - 250
Target Start/End: Original strand, 28259302 - 28259345
Alignment:
Q  207 cttatctttgtgctttgattatgcttgtggtgttgctctacact 250  Q
    ||||||||||| |||||  |||||||||||||||||||||||||    
T  28259302 cttatctttgttctttgtatatgcttgtggtgttgctctacact 28259345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 264
Target Start/End: Complemental strand, 39482893 - 39482846
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctg 264  Q
    ||||||| ||||||||||||||||| ||||||||||||| ||| ||||    
T  39482893 tgctttggttatgcttgtggtgttgttctacacttagatttaggtctg 39482846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 320
Target Start/End: Complemental strand, 3491662 - 3491616
Alignment:
Q  274 gttgttgttgcttggatacactttatccattgattaccacttccttt 320  Q
    |||||||||||||||| ||||||||  ||| ||||||||||||||||    
T  3491662 gttgttgttgcttggagacactttacacatagattaccacttccttt 3491616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 259
Target Start/End: Complemental strand, 5699748 - 5699706
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctag 259  Q
    |||||||| || ||||||||||||||| |||||||||||||||    
T  5699748 tgctttgaataagcttgtggtgttgctttacacttagatctag 5699706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 184
Target Start/End: Complemental strand, 13136818 - 13136784
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaat 184  Q
    |||||||||||||||||||||| ||||||||||||    
T  13136818 tgaactcaaaaatatcataaaatgactctaaaaat 13136784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 320
Target Start/End: Complemental strand, 25398404 - 25398358
Alignment:
Q  274 gttgttgttgcttggatacactttatccattgattaccacttccttt 320  Q
    |||||||||||||||| ||||||||  ||| ||||||||||||||||    
T  25398404 gttgttgttgcttggagacactttacacatagattaccacttccttt 25398358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #47
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 320
Target Start/End: Complemental strand, 25403542 - 25403496
Alignment:
Q  274 gttgttgttgcttggatacactttatccattgattaccacttccttt 320  Q
    |||||||||||||||| ||||||||  ||| ||||||||||||||||    
T  25403542 gttgttgttgcttggagacactttacacatagattaccacttccttt 25403496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #48
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 184
Target Start/End: Original strand, 31430582 - 31430616
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaat 184  Q
    ||||||||||| |||||||||||||||||||||||    
T  31430582 tgaactcaaaattatcataaaaagactctaaaaat 31430616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #49
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 6826030 - 6825974
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 206  Q
    ||||||||||||||||||||||||||| |||| ||   ||||||  |||||||||||    
T  6826030 tgaactcaaaaatatcataaaaagactttaaatataacgaatgattgactgtcatca 6825974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #50
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 207
Target Start/End: Complemental strand, 11059069 - 11059029
Alignment:
Q  167 taaaaagactctaaaaatgtggaatgacagactgtcatcac 207  Q
    |||||||||||||||||||||  ||||| ||||||||||||    
T  11059069 taaaaagactctaaaaatgtgatatgacggactgtcatcac 11059029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 207 - 323
Target Start/End: Original strand, 5017593 - 5017709
Alignment:
Q  207 cttatctttgtgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattga 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||          ||||||||||||||| ||||||||||||||||    
T  5017593 cttatctttgtgctttgattatgcttgtggtgttgctctacacttagatctaggtctgttttttttttttgttgttgcttggagacactttatccattga 5017692  T
Q  307 ttaccacttcctttgct 323  Q
    |||||||||||||||||    
T  5017693 ttaccacttcctttgct 5017709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 34501604 - 34501532
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacac 89  Q
    ||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  34501604 cacgttttagctaatgtcgaatgaacctcatcctatgctccaaatcgtgacacgttttcaacaatcgtgacac 34501532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 9953226 - 9953155
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgaca 88  Q
    ||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||    
T  9953226 cacgttttaaccaatgtcgaatgaacctcattctgtgctccaaatcgtgacacgttttcaacaatcgtgaca 9953155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 201 - 323
Target Start/End: Complemental strand, 18232824 - 18232705
Alignment:
Q  201 tcatcacttatctttgt-gctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttat 299  Q
    ||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||| | ||         |||||||||||||||| |||||||||    
T  18232824 tcatcgcttatctttattgctttgattatgcttgtggtgttgctctacacttagatctaggtttg----tttttgttgttgttgcttggagacactttat 18232729  T
Q  300 ccattgattaccacttcctttgct 323  Q
    | ||||||||||||||||||||||    
T  18232728 ctattgattaccacttcctttgct 18232705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 217 - 323
Target Start/End: Original strand, 10077300 - 10077402
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttc 316  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||         |||||||||||||||| |||||||||| |||||||||||||||    
T  10077300 tgctttgattatgcttgtggtgttgctctacacttagatttaggtctg----tttttgttgttgttgcttggagacactttatctattgattaccacttc 10077395  T
Q  317 ctttgct 323  Q
    |||||||    
T  10077396 ctttgct 10077402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 5739001 - 5739073
Alignment:
Q  19 cgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacacga 91  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||||| ||||| ||||||||||||||||    
T  5739001 cgttttaaccaatgtcgaatgaacctcatcctttgctccaaatcgtgacatgtttttaacaatcgtgacacga 5739073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 217 - 319
Target Start/End: Complemental strand, 22963662 - 22963563
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttc 316  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||         |||||||||||||||| |||||||||  |||||||||||||||    
T  22963662 tgctttgattatgcttgtggtgttgctctacacttagatctaggtctg---ttttttgttgttgttgcttggagacactttattaattgattaccacttc 22963566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 217 - 319
Target Start/End: Original strand, 23824731 - 23824830
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttc 316  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||         |||||||||||||||| |||||||||  |||||||||||||||    
T  23824731 tgctttgattatgcttgtggtgttgctctacacttagatctaggtctg---ttttttgttgttgttgcttggagacactttattaattgattaccacttc 23824827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 9953092 - 9953036
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 206  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  9953092 tgaactcaaaaatatcataaaaagactctaaaaatgtgaaatgacagactgtcatca 9953036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 23379623 - 23379695
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacac 89  Q
    |||||||||| ||||||||| ||||||||||| | |||| |||||||||||||||||||||||||||||||||    
T  23379623 cacgttttaatcaatgtcgagtgaacctcatcatgtgctccaaatcgtgacacgttttcaacaatcgtgacac 23379695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 23388962 - 23389034
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacac 89  Q
    |||||||||| ||||||||| ||||||||||| | |||| |||||||||||||||||||||||||||||||||    
T  23388962 cacgttttaatcaatgtcgagtgaacctcatcatgtgctccaaatcgtgacacgttttcaacaatcgtgacac 23389034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 217 - 323
Target Start/End: Complemental strand, 31979475 - 31979373
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttc 316  Q
    ||||||||||||||||||| ||||||||||||||||||| ||| ||||         |||||||||||||| | |||||||||| |||||||||||||||    
T  31979475 tgctttgattatgcttgtgatgttgctctacacttagatttaggtctg----tttttgttgttgttgcttgaagacactttatctattgattaccacttc 31979380  T
Q  317 ctttgct 323  Q
    |||||||    
T  31979379 ctttgct 31979373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 223 - 323
Target Start/End: Original strand, 5572737 - 5572833
Alignment:
Q  223 gattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttcctttgc 322  Q
    ||||||||||||||||||||||||||||||||| ||  ||||         | |||||||||||||| |||||||||| |||||||||||||||||||||    
T  5572737 gattatgcttgtggtgttgctctacacttagatttatgtctg----tttttgctgttgttgcttggagacactttatctattgattaccacttcctttgc 5572832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 207 - 323
Target Start/End: Original strand, 5757603 - 5757713
Alignment:
Q  207 cttatctttgtgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattga 306  Q
    ||||||||||| ||||| |||||||||||||||||||||||||| |||| ||| ||||         |||||||||||||||| ||||||||  ||||||    
T  5757603 cttatctttgttctttgtttatgcttgtggtgttgctctacact-agat-taggtctg----tttttgttgttgttgcttggagacactttacacattga 5757696  T
Q  307 ttaccacttcctttgct 323  Q
    |||||||||||||||||    
T  5757697 ttaccacttcctttgct 5757713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 201 - 319
Target Start/End: Original strand, 21801467 - 21801583
Alignment:
Q  201 tcatcacttatctttgt-gctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttat 299  Q
    |||| |||||||||| | |||||||||||| ||||||| ||| ||||||||||||| ||| ||||         |||||||||||||||| |||||||||    
T  21801467 tcattacttatctttattgctttgattatgattgtggtattgttctacacttagatttaggtctg---atttttgttgttgttgcttggagacactttat 21801563  T
Q  300 ccattgattaccacttcctt 319  Q
    | ||||||||||||||||||    
T  21801564 ctattgattaccacttcctt 21801583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 274 - 323
Target Start/End: Original strand, 31086650 - 31086699
Alignment:
Q  274 gttgttgttgcttggatacactttatccattgattaccacttcctttgct 323  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  31086650 gttgtttttgcttggagacactttatccattgattaccacttcctttgct 31086699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 28666120 - 28666176
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 206  Q
    |||||||||||||||||||||||||||||||||||   ||||||| |||||||||||    
T  28666120 tgaactcaaaaatatcataaaaagactctaaaaataacgaatgactgactgtcatca 28666176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 264
Target Start/End: Complemental strand, 4629915 - 4629868
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctg 264  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  4629915 tgctttgattatgcttgtggtgttgctctacacttagatttaggtctg 4629868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 320
Target Start/End: Complemental strand, 31936549 - 31936451
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttc 316  Q
    ||||||| ||||||||||||||||||||||||||| |||  || ||||         |||||||||||||||| ||||||||  ||||||||||||||||    
T  31936549 tgctttgtttatgcttgtggtgttgctctacactttgattaaggtctg-----ttttgttgttgttgcttggagacactttacacattgattaccacttc 31936455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 2371603 - 2371529
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacacga 91  Q
    ||||||||||||||||||||||||||||| |||| ||||  |||||  || || |||||||||||||||| ||||    
T  2371603 cacgttttaaccaatgtcgaatgaacctcgtcctgtgctctaaatctcgatacattttcaacaatcgtgatacga 2371529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 10289242 - 10289186
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 206  Q
    |||||||||||||||||||||||||||||||||||   |||||||  ||||||||||    
T  10289242 tgaactcaaaaatatcataaaaagactctaaaaatagcgaatgacttactgtcatca 10289186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 207 - 323
Target Start/End: Complemental strand, 21356008 - 21355898
Alignment:
Q  207 cttatctttgtgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattga 306  Q
    ||||||||||| |||||  ||||||||||||||||||||||||| ||| |||| ||||         |||||||||||||| | ||||||||  ||||||    
T  21356008 cttatctttgttctttgtatatgcttgtggtgttgctctacact-aga-ctaggtctg----tttttgttgttgttgcttgaagacactttacacattga 21355915  T
Q  307 ttaccacttcctttgct 323  Q
    |||||||||||||||||    
T  21355914 ttaccacttcctttgct 21355898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 90
Target Start/End: Original strand, 13004611 - 13004643
Alignment:
Q  58 aaatcgtgacacgttttcaacaatcgtgacacg 90  Q
    |||||||||||||||||||||||||||||||||    
T  13004611 aaatcgtgacacgttttcaacaatcgtgacacg 13004643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 320
Target Start/End: Original strand, 26258187 - 26258233
Alignment:
Q  274 gttgttgttgcttggatacactttatccattgattaccacttccttt 320  Q
    |||||||||||||||| ||||||||  ||||| ||||||||||||||    
T  26258187 gttgttgttgcttggagacactttacacattggttaccacttccttt 26258233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 207
Target Start/End: Complemental strand, 14968822 - 14968782
Alignment:
Q  167 taaaaagactctaaaaatgtggaatgacagactgtcatcac 207  Q
    |||||||||||||||||||||  ||||| ||||||||||||    
T  14968822 taaaaagactctaaaaatgtgatatgacggactgtcatcac 14968782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 26435 - 26361
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacacga 91  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26435 cacgttttaaccaatgtcgaatgaacctcatcctgtgcttcaaatcgtgacacgttttcaacaatcgtgacacga 26361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 26310 - 26253
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactcta-aaaatgtggaatgacagactgtcatca 206  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  26310 tgaactcaaaaatatcataaaaagactctaaaaaatgtggaatgacagactatcatca 26253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 4e-32; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 2793489 - 2793415
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacacga 91  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2793489 cacgttttaaccaatgtcgaatgaacctcatcctgtgcttcaaatcgtgacacgttttcaacaatcgtgacacga 2793415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 1951155 - 1951229
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacacga 91  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1951155 cacgttttaaccactgtcgaatgaacctcatcctatgctccaaatcgtgacacgttttcaacaatcgtgacacga 1951229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 49499378 - 49499449
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgaca 88  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  49499378 cacgttttaaccaatgtcgaatgaacctcatcatatgctccaaatcgtgacacgttttcaacaatcgtgaca 49499449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 201 - 323
Target Start/End: Original strand, 40816850 - 40816970
Alignment:
Q  201 tcatcacttatctttgt-gctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttat 299  Q
    |||| |||||||||| | |||||||||||||| ||||||||||||||||||||||| ||| ||||         |||||||||||||||| |||||||||    
T  40816850 tcattacttatctttattgctttgattatgctcgtggtgttgctctacacttagatttaggtctg---ttttttgttgttgttgcttggagacactttat 40816946  T
Q  300 ccattgattaccacttcctttgct 323  Q
    | ||||||||||||||||||||||    
T  40816947 ctattgattaccacttcctttgct 40816970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 217 - 323
Target Start/End: Complemental strand, 775634 - 775532
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttc 316  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||         |||||||||||||||| |||||||||| |||| ||||||||||    
T  775634 tgctttgattatgcttgtggtgttgctctacacttagatttaggtctg----tttttgttgttgttgcttggagacactttatctattggttaccacttc 775539  T
Q  317 ctttgct 323  Q
    |||||||    
T  775538 ctttgct 775532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 29644118 - 29644192
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacacga 91  Q
    ||||||||| ||||||||||||||| |||||||| |||| |||||||||| ||||||||||||||||||||||||    
T  29644118 cacgttttagccaatgtcgaatgaatctcatcctgtgctccaaatcgtgatacgttttcaacaatcgtgacacga 29644192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 29644252 - 29644309
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatcac 207  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  29644252 tgaactcaaaaatatcataaaaagactctataaatgtggaatgacagactgtcatcac 29644309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 217 - 320
Target Start/End: Original strand, 27104507 - 27104602
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttc 316  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||          ||||||||||||||| |||||||||| |||||||||||||||    
T  27104507 tgctttgattatgcttgtggtgttgctctacacttagatttaggtctg--------ttttgttgttgcttggagacactttatctattgattaccacttc 27104598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 217 - 323
Target Start/End: Original strand, 16124652 - 16124754
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttc 316  Q
    ||||||||||||| |||||||||||||||||| |||||||||| ||||         |||||||||||||||| ||| ||||| ||||||||||||||||    
T  16124652 tgctttgattatgtttgtggtgttgctctacatttagatctaggtctg----tttttgttgttgttgcttggacacattttattcattgattaccacttc 16124747  T
Q  317 ctttgct 323  Q
    |||||||    
T  16124748 ctttgct 16124754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 217 - 323
Target Start/End: Original strand, 47098959 - 47099060
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttc 316  Q
    |||||||||||| |||||||||||||||||||||||||| ||| ||||         ||||||||| |||||| |||||||||| |||||||||||||||    
T  47098959 tgctttgattatacttgtggtgttgctctacacttagatttaggtctg-----ttttgttgttgttacttggagacactttatctattgattaccacttc 47099053  T
Q  317 ctttgct 323  Q
    |||||||    
T  47099054 ctttgct 47099060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 42021913 - 42021838
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacac-gttttcaacaatcgtgacacga 91  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||||||||  ||||||  |||||||||||||    
T  42021913 cacgttttaaccaatgtcgaatgaacctcatccgatgctccaaatcgtgacacatttttcagtaatcgtgacacga 42021838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 217 - 323
Target Start/End: Complemental strand, 29651773 - 29651670
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttc 316  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||         |||||||||| ||  | ||||||||| ||||||||||||||||    
T  29651773 tgctttgattatgcttgtggtgttgctctacacttagatctaagtctg---ttttttgttgttgttgattatagacactttattcattgattaccacttc 29651677  T
Q  317 ctttgct 323  Q
    |||||||    
T  29651676 ctttgct 29651670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 217 - 323
Target Start/End: Original strand, 47102976 - 47103077
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttc 316  Q
    |||||||||||| |||||||||||||||||||||||||| ||| ||||         ||||||||||||| || |||||||||| |||||||||||||||    
T  47102976 tgctttgattatacttgtggtgttgctctacacttagatttaggtctg-----ttttgttgttgttgctttgagacactttatctattgattaccacttc 47103070  T
Q  317 ctttgct 323  Q
     ||||||    
T  47103071 atttgct 47103077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 220 - 321
Target Start/End: Complemental strand, 19072886 - 19072788
Alignment:
Q  220 tttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttcctt 319  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||         ||||||||||||| || |||||||||| ||||||||| ||||||||    
T  19072886 tttgattatgcttgtggtgttgctctacacttagatttaggtctg---atttttgttgttgttgcttcgagacactttatctattgattactacttcctt 19072790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 220 - 321
Target Start/End: Complemental strand, 19120776 - 19120678
Alignment:
Q  220 tttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttcctt 319  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||         ||||||||||||| || |||||||||| ||||||||| ||||||||    
T  19120776 tttgattatgcttgtggtgttgctctacacttagatttaggtctg---atttttgttgttgttgcttcgagacactttatctattgattactacttcctt 19120680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 26 - 91
Target Start/End: Original strand, 34733082 - 34733147
Alignment:
Q  26 accaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacacga 91  Q
    ||||||||||||||||||||||||| |||| |||||| ||||| |||||||||||||||| |||||    
T  34733082 accaatgtcgaatgaacctcatcctgtgctccaaatcctgacatgttttcaacaatcgtgtcacga 34733147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 207 - 323
Target Start/End: Original strand, 26645023 - 26645134
Alignment:
Q  207 cttatctttgtgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattga 306  Q
    ||||||||||||||||| |||||||||||||||||||||||||| || ||||| ||||         |||||||||||||  | ||||||||  ||||||    
T  26645023 cttatctttgtgctttgtttatgcttgtggtgttgctctacactaag-tctaggtctg----cttttgttgttgttgcttaaagacactttacacattga 26645117  T
Q  307 ttaccacttcctttgct 323  Q
    |||||||||| ||||||    
T  26645118 ttaccacttcatttgct 26645134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 217 - 320
Target Start/End: Original strand, 47704071 - 47704171
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttc 316  Q
    |||||||||||  |||||||||||||||||||||||||| ||| |||          ||||||| |||||||| |||||||||| |||||||||||||||    
T  47704071 tgctttgattaaacttgtggtgttgctctacacttagatttaggtct---attttttgttgttgctgcttggagacactttatctattgattaccacttc 47704167  T
Q  317 cttt 320  Q
    ||||    
T  47704168 cttt 47704171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 264
Target Start/End: Complemental strand, 13598360 - 13598313
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctg 264  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||    
T  13598360 tgctttgattatgcttgtggtgtttctctacacttagatctaggtctg 13598313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 323
Target Start/End: Original strand, 21536689 - 21536806
Alignment:
Q  201 tcatcacttatctttgtgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatc 300  Q
    ||||| |||||||||||||||||  ||||||||||||||||||||||| | || ||||| |||          |||||||||| ||||| ||||||||      
T  21536689 tcatcgcttatctttgtgctttgtctatgcttgtggtgttgctctacagtaag-tctaggtct----atttttgttgttgttgattggagacactttaca 21536783  T
Q  301 cattgattaccacttcctttgct 323  Q
    |||||||||||||||||||||||    
T  21536784 cattgattaccacttcctttgct 21536806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 207
Target Start/End: Complemental strand, 2404778 - 2404721
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatcac 207  Q
    ||||||||||||||| |||||||||||||||||||   ||||||| ||||||||||||    
T  2404778 tgaactcaaaaatattataaaaagactctaaaaatagcgaatgactgactgtcatcac 2404721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 248
Target Start/End: Complemental strand, 37069741 - 37069700
Alignment:
Q  207 cttatctttgtgctttgattatgcttgtggtgttgctctaca 248  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  37069741 cttatctttgtgctttgtttatgcttgtggtgttgctctaca 37069700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 264
Target Start/End: Complemental strand, 32889400 - 32889353
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctg 264  Q
    ||||||| |||| |||||||||||||||||||||||||| ||||||||    
T  32889400 tgctttggttatacttgtggtgttgctctacacttagatttagatctg 32889353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 274 - 320
Target Start/End: Complemental strand, 3281617 - 3281571
Alignment:
Q  274 gttgttgttgcttggatacactttatccattgattaccacttccttt 320  Q
    |||||||||||||||| ||||||||  ||||||||||||||||||||    
T  3281617 gttgttgttgcttggagacactttacacattgattaccacttccttt 3281571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 249
Target Start/End: Complemental strand, 3281679 - 3281637
Alignment:
Q  207 cttatctttgtgctttgattatgcttgtggtgttgctctacac 249  Q
    ||||||||||||||||| |||| ||||||||||||||||||||    
T  3281679 cttatctttgtgctttgtttattcttgtggtgttgctctacac 3281637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 278 - 323
Target Start/End: Complemental strand, 37069673 - 37069628
Alignment:
Q  278 ttgttgcttggatacactttatccattgattaccacttcctttgct 323  Q
    |||||||||||| ||||||||  |||||||||||||||||||||||    
T  37069673 ttgttgcttggagacactttacacattgattaccacttcctttgct 37069628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 207
Target Start/End: Original strand, 21019313 - 21019368
Alignment:
Q  151 gaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatcac 207  Q
    ||||||||||||||||||||| ||||||||||||   ||||||| ||||||||||||    
T  21019313 gaactcaaaaatatcataaaa-gactctaaaaatagcgaatgactgactgtcatcac 21019368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 206
Target Start/End: Original strand, 41059178 - 41059234
Alignment:
Q  151 gaactcaaaaatatcataaaa-agactctaaaaatgtggaatgacagactgtcatca 206  Q
    ||||||||||||||||||||| |||||||||||||   ||||||| |||||||||||    
T  41059178 gaactcaaaaatatcataaaaaagactctaaaaatagcgaatgactgactgtcatca 41059234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 255
Target Start/End: Original strand, 9023971 - 9024005
Alignment:
Q  221 ttgattatgcttgtggtgttgctctacacttagat 255  Q
    ||||||||||||||||||||||| |||||||||||    
T  9023971 ttgattatgcttgtggtgttgctatacacttagat 9024005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 320
Target Start/End: Original strand, 19359033 - 19359079
Alignment:
Q  274 gttgttgttgcttggatacactttatccattgattaccacttccttt 320  Q
    |||||||||||||||| ||||||||  ||| ||||||||||||||||    
T  19359033 gttgttgttgcttggagacactttacacatagattaccacttccttt 19359079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 320
Target Start/End: Original strand, 19361624 - 19361669
Alignment:
Q  275 ttgttgttgcttggatacactttatccattgattaccacttccttt 320  Q
    ||||||||||||||| ||||||||  ||| ||||||||||||||||    
T  19361624 ttgttgttgcttggagacactttacacatagattaccacttccttt 19361669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 320
Target Start/End: Original strand, 19380264 - 19380309
Alignment:
Q  275 ttgttgttgcttggatacactttatccattgattaccacttccttt 320  Q
    ||||||||||||||| ||||||||  ||| ||||||||||||||||    
T  19380264 ttgttgttgcttggagacactttacacatagattaccacttccttt 19380309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 207
Target Start/End: Complemental strand, 37641021 - 37640981
Alignment:
Q  167 taaaaagactctaaaaatgtggaatgacagactgtcatcac 207  Q
    |||||||||||||||||||||  ||||| ||||||||||||    
T  37641021 taaaaagactctaaaaatgtgatatgacggactgtcatcac 37640981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 45961651 - 45961707
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 206  Q
    ||||||||||| |||||||| ||||||||||||||    |||||| |||||||||||    
T  45961651 tgaactcaaaattatcataacaagactctaaaaatagcaaatgactgactgtcatca 45961707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 259
Target Start/End: Original strand, 48382607 - 48382659
Alignment:
Q  208 ttatctttgt-gctttgattatgcttgtggtgttgctctacacttagatctag 259  Q
    |||||||||| ||||| |||||| |||||||||||||  ||||||||||||||    
T  48382607 ttatctttgttgctttaattatgtttgtggtgttgcttcacacttagatctag 48382659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 6e-31; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 207 - 323
Target Start/End: Complemental strand, 49091634 - 49091522
Alignment:
Q  207 cttatctttgtgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattga 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||         |||||||||||||||| |||||||||| |||||    
T  49091634 cttatctttgtgctttgattatgcttgtggtgttgctctacacttaaatctaggtctg----tttttgttgttgttgcttggagacactttatctattga 49091539  T
Q  307 ttaccacttcctttgct 323  Q
    |||||||||||||||||    
T  49091538 ttaccacttcctttgct 49091522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 217 - 323
Target Start/End: Original strand, 9235690 - 9235794
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttc 316  Q
    |||||||||||||||||||||||||||||||| |||||| ||| ||||         |||||||||||||||| ||||||||||||||||||||||||||    
T  9235690 tgctttgattatgcttgtggtgttgctctacatttagatttaggtctg--tttttttgttgttgttgcttggagacactttatccattgattaccacttc 9235787  T
Q  317 ctttgct 323  Q
    |||||||    
T  9235788 ctttgct 9235794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 217 - 323
Target Start/End: Original strand, 4796802 - 4796907
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttc 316  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||| |        |||||||||||||||| | |||||||| |||||||||||||||    
T  4796802 tgctttgattatgcttgtggtgttgctctacacttagatttaggtct-gttttttttgttgttgttgcttggagaaactttatctattgattaccacttc 4796900  T
Q  317 ctttgct 323  Q
    |||||||    
T  4796901 ctttgct 4796907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 8276202 - 8276128
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacacga 91  Q
    |||||||||||||||||||||||||||||||| | |||| |||||||||| ||||||||||||||| ||||||||    
T  8276202 cacgttttaaccaatgtcgaatgaacctcatcatgtgctccaaatcgtgatacgttttcaacaatcatgacacga 8276128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 217 - 323
Target Start/End: Original strand, 23403148 - 23403250
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttc 316  Q
    |||||||||||||||||||||||||||||||||||| || ||| ||||         |||||||||||||||| ||||||||||||||||||| ||||||    
T  23403148 tgctttgattatgcttgtggtgttgctctacacttacatttaggtctg----tttttgttgttgttgcttggaaacactttatccattgattatcacttc 23403243  T
Q  317 ctttgct 323  Q
    |||||||    
T  23403244 ctttgct 23403250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 26556700 - 26556626
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacacga 91  Q
    |||||||||||||||||||||| ||||||||| | ||||  ||||||||||||||||||||||||||||||||||    
T  26556700 cacgttttaaccaatgtcgaataaacctcatcatgtgctctaaatcgtgacacgttttcaacaatcgtgacacga 26556626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 2442089 - 2442161
Alignment:
Q  18 acgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacacga 91  Q
    |||||||| |||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2442089 acgttttagccaatgtcgagtgaac-tcatcctatgcttcaaatcgtgatacgttttcaacaatcgtgacacga 2442161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 8276068 - 8276012
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 206  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  8276068 tgaactcaaaaatatcataaaaagactctaaaaatatggaatgacagactgtcatca 8276012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 10431576 - 10431504
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacac 89  Q
    ||||||||| |||||||||| ||||||||||||| ||||  ||||||||||||||||||||||||||||||||    
T  10431576 cacgttttagccaatgtcgagtgaacctcatcctgtgctctaaatcgtgacacgttttcaacaatcgtgacac 10431504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 217 - 317
Target Start/End: Complemental strand, 29159765 - 29159669
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttc 316  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||         |||||||||||||||| |||||||||| |||||||||||||||    
T  29159765 tgctttgattatgcttgtggtgttgctctacacttagatttaggtctg----tttttgttgttgttgcttggagacactttatctattgattaccacttc 29159670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 217 - 323
Target Start/End: Complemental strand, 20284051 - 20283949
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttc 316  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||         ||||||||| |||||| ||||||||||||||||||| ||||||    
T  20284051 tgctttgattatgcttgtggtgttgctctacacttagatttaggtctg----tttttgttgttgtttcttggagacactttatccattgattatcacttc 20283956  T
Q  317 ctttgct 323  Q
     ||||||    
T  20283955 ttttgct 20283949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 207 - 264
Target Start/End: Complemental strand, 55920 - 55863
Alignment:
Q  207 cttatctttgtgctttgattatgcttgtggtgttgctctacacttagatctagatctg 264  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  55920 cttatctttgtgctttgattatgcttgtggtgttgctctatacttagatctaggtctg 55863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 4542260 - 4542192
Alignment:
Q  20 gttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacac 89  Q
    ||||||||||||||||||||||| |||||||||||| |||||| |||||| |||||||||||||||||||    
T  4542260 gttttaaccaatgtcgaatgaac-tcatcctatgctccaaatcatgacacattttcaacaatcgtgacac 4542192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 217 - 320
Target Start/End: Original strand, 9185298 - 9185396
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttc 316  Q
    ||||||| |||||||||||||||| |||||||||||||||||| ||||         |||||||||||||||| ||||||||  ||||||||||||||||    
T  9185298 tgctttgtttatgcttgtggtgtttctctacacttagatctaggtctg-----ttttgttgttgttgcttggagacactttacacattgattaccacttc 9185392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 217 - 320
Target Start/End: Original strand, 9190143 - 9190241
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttc 316  Q
    ||||||| ||||||||||||||||||||||||||||||||||| | ||         |||||||||||||||| ||||||||  ||||||||||||||||    
T  9190143 tgctttgtttatgcttgtggtgttgctctacacttagatctaggtttg-----ttttgttgttgttgcttggagacactttacacattgattaccacttc 9190237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 220 - 321
Target Start/End: Original strand, 33332588 - 33332685
Alignment:
Q  220 tttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttcctt 319  Q
    ||||||||||||| |||||||||||||||||||||| ||| | ||         |||||||||| |||||||||||||||| ||||||||||||||||||    
T  33332588 tttgattatgcttatggtgttgctctacacttagatttaggtttg----tttttgttgttgttgtttggatacactttatctattgattaccacttcctt 33332683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 45287947 - 45288004
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgtttt 74  Q
    |||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||    
T  45287947 cacgttttaaccaatgtcgaatgaacctcatcttatgttccaaatcgtgacacgtttt 45288004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 45291283 - 45291340
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgtttt 74  Q
    ||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||    
T  45291283 cacgttttaaccaatgtcgaatgaacctcattctatgttccaaatcgtgacacgtttt 45291340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 217 - 323
Target Start/End: Original strand, 46516445 - 46516548
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttc 316  Q
    |||||||||||||||| |||||||||| ||||||||||| ||  ||||         |||||||||| ||||| |||||||||| |||||||||||||||    
T  46516445 tgctttgattatgcttttggtgttgctttacacttagatttaagtctg---ttttttgttgttgttgtttggagacactttatctattgattaccacttc 46516541  T
Q  317 ctttgct 323  Q
    |||||||    
T  46516542 ctttgct 46516548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 217 - 323
Target Start/End: Complemental strand, 21988869 - 21988766
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttc 316  Q
    ||||||||||||| |||||||||||||||||||  |||| ||| |||||        |||||||||||||||  ||||||||  ||||||||||||||||    
T  21988869 tgctttgattatgtttgtggtgttgctctacacccagatttaggtctggagttt---gttgttgttgcttggtgacactttacacattgattaccacttc 21988773  T
Q  317 ctttgct 323  Q
    |||||||    
T  21988772 ctttgct 21988766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 274 - 323
Target Start/End: Complemental strand, 35960723 - 35960674
Alignment:
Q  274 gttgttgttgcttggatacactttatccattgattaccacttcctttgct 323  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  35960723 gttgttgttgcttggaaacactttatctattgattaccacttcctttgct 35960674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 45288082 - 45288139
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatcac 207  Q
    |||||||||||||||||||||||||||||||||||   ||||||| ||||||||||||    
T  45288082 tgaactcaaaaatatcataaaaagactctaaaaatagtgaatgactgactgtcatcac 45288139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 9865586 - 9865642
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 206  Q
    |||||||||||||||||||||||||||||||||||   ||||||| |||||||||||    
T  9865586 tgaactcaaaaatatcataaaaagactctaaaaatagcgaatgactgactgtcatca 9865642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 45291418 - 45291474
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 206  Q
    |||||||||||||||||||||||||||||||||||   ||||||| |||||||||||    
T  45291418 tgaactcaaaaatatcataaaaagactctaaaaatagtgaatgactgactgtcatca 45291474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 217 - 323
Target Start/End: Original strand, 2647831 - 2647934
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttc 316  Q
    |||||||||||||||||||||||||||||| |||||||| ||| ||||         |||||||||| ||||| | | |||||| ||||||||||| |||    
T  2647831 tgctttgattatgcttgtggtgttgctctaaacttagatttaggtctg---ttttttgttgttgttgtttggagatattttatctattgattaccatttc 2647927  T
Q  317 ctttgct 323  Q
    |||||||    
T  2647928 ctttgct 2647934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 9273978 - 9274035
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatcac 207  Q
    ||||||| ||||||||||||||||||| | |||||||| |||||| ||||||||||||    
T  9273978 tgaactccaaaatatcataaaaagactttgaaaatgtgaaatgacggactgtcatcac 9274035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 211
Target Start/End: Original strand, 20081584 - 20081645
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatcacttat 211  Q
    ||||||||||||||||||||||| |||||||||||   ||||||| ||||||||||| ||||    
T  20081584 tgaactcaaaaatatcataaaaacactctaaaaatagtgaatgactgactgtcatcaattat 20081645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 323
Target Start/End: Complemental strand, 21983245 - 21983142
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttc 316  Q
    ||||||||||||| |||||||||||||||||||  |||| ||| |||||        |||||||||||||||| | ||||||  ||||||||||||||||    
T  21983245 tgctttgattatgtttgtggtgttgctctacacccagatttaggtctggagttt---gttgttgttgcttggagatactttacacattgattaccacttc 21983149  T
Q  317 ctttgct 323  Q
     ||||||    
T  21983148 atttgct 21983142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 207 - 323
Target Start/End: Complemental strand, 2479309 - 2479199
Alignment:
Q  207 cttatctttgtgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattga 306  Q
    ||||||||||| |||||  ||||||||||||||||||||||||| ||| |||| ||||         ||||||||||||| || ||||||||  ||||||    
T  2479309 cttatctttgttctttgtatatgcttgtggtgttgctctacact-aga-ctaggtctg----tttttgttgttgttgcttagagacactttacacattga 2479216  T
Q  307 ttaccacttcctttgct 323  Q
    |||||||||||||||||    
T  2479215 ttaccacttcctttgct 2479199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 275 - 320
Target Start/End: Complemental strand, 55847 - 55802
Alignment:
Q  275 ttgttgttgcttggatacactttatccattgattaccacttccttt 320  Q
    ||||||||||||||| ||||||||  ||||||||||||||||||||    
T  55847 ttgttgttgcttggagacactttacacattgattaccacttccttt 55802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 4596872 - 4596925
Alignment:
Q  154 ctcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatcac 207  Q
    |||||||||||||||||||||||||||||||   ||||||  ||||||||||||    
T  4596872 ctcaaaaatatcataaaaagactctaaaaataacgaatgattgactgtcatcac 4596925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 207 - 323
Target Start/End: Complemental strand, 47263650 - 47263540
Alignment:
Q  207 cttatctttgtgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattga 306  Q
    ||||||||| | ||||| ||||||||||||||||||||||||| |||| |||| |||          ||| |||||||||||| ||||||||  ||||||    
T  47263650 cttatctttattctttgtttatgcttgtggtgttgctctacac-taga-ctaggtct----atttttgtttttgttgcttggagacactttacacattga 47263557  T
Q  307 ttaccacttcctttgct 323  Q
    |||||||||||||||||    
T  47263556 ttaccacttcctttgct 47263540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 17730029 - 17729973
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 206  Q
    |||||||||||||||||||||| ||||||||||||   ||| ||| |||||||||||    
T  17730029 tgaactcaaaaatatcataaaaggactctaaaaatagtgaaagactgactgtcatca 17729973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 320
Target Start/End: Complemental strand, 2580349 - 2580251
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttc 316  Q
    ||||||| |||| ||||||||||  |||||||||||||| ||| ||||         |||||||||||||| | ||||||||  ||||||||||||||||    
T  2580349 tgctttggttatacttgtggtgtatctctacacttagatttaggtctg-----ttttgttgttgttgcttgaagacactttacacattgattaccacttc 2580255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 207 - 250
Target Start/End: Original strand, 44848809 - 44848852
Alignment:
Q  207 cttatctttgtgctttgattatgcttgtggtgttgctctacact 250  Q
    ||||||||||| |||||  |||||||||||||||||||||||||    
T  44848809 cttatctttgttctttgtatatgcttgtggtgttgctctacact 44848852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 184
Target Start/End: Complemental strand, 4694779 - 4694745
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaat 184  Q
    ||||||||||||||||||| |||||||||||||||    
T  4694779 tgaactcaaaaatatcatagaaagactctaaaaat 4694745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 320
Target Start/End: Complemental strand, 18413552 - 18413506
Alignment:
Q  274 gttgttgttgcttggatacactttatccattgattaccacttccttt 320  Q
    |||||||||||||||| ||||||||  ||| ||||||||||||||||    
T  18413552 gttgttgttgcttggagacactttacacatagattaccacttccttt 18413506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 9080432 - 9080376
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 206  Q
    |||||||||||||  ||||||||||||||||||||   |||||||  ||||||||||    
T  9080432 tgaactcaaaaattacataaaaagactctaaaaataacgaatgactaactgtcatca 9080376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 36)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 5540805 - 5540876
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgaca 88  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5540805 cacgttttaaccaatgtcgaatgaacctcatcctgtgcttcaaatcgtgacacgttttcaacaatcgtgaca 5540876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 25595494 - 25595568
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacacga 91  Q
    |||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||    
T  25595494 cacgttttaaccaatgtcgaatgaacctcatcatgtgctccaaatcgtgacacgttttcaacaatcgtgacacga 25595568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 45156728 - 45156802
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacacga 91  Q
    |||||||||| ||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||    
T  45156728 cacgttttaatcaatgtcgaatgaacctcatcctgtgctccaaatcgtgacacattttcaacaatcgtgacacga 45156802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 25228202 - 25228128
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacacga 91  Q
    |||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||| |||||| |||||||    
T  25228202 cacgttttaaccaatgtcgaatgaacctcatcatgtgctccaaatcgtgacacgttttcagcaatcgagacacga 25228128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 25592309 - 25592383
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacacga 91  Q
    |||||||||||||||||||||||||||||||| | |||| ||||||| ||||| |||||||||||||||||||||    
T  25592309 cacgttttaaccaatgtcgaatgaacctcatcatgtgctccaaatcgggacacattttcaacaatcgtgacacga 25592383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 43682607 - 43682681
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacacga 91  Q
    |||||||||||||||||||||||||||||||||| || | ||||| ||||||||||||||| |||||||||||||    
T  43682607 cacgttttaaccaatgtcgaatgaacctcatcctgtgttccaaattgtgacacgttttcaataatcgtgacacga 43682681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 5540939 - 5540996
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatcac 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  5540939 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacaaactgtcatcac 5540996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 17895327 - 17895402
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacg-ttttcaacaatcgtgacacga 91  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||  |||||||||||||    
T  17895327 cacgttttaaccaatgtcgaatgaacctcatcatgtgcttcaaatcgtgacacgtttttcagtaatcgtgacacga 17895402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 20520142 - 20520079
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaa 80  Q
    |||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||    
T  20520142 cacgttttaaccaatgtcgaatgaacctcatcctgtgttccaaatcgtgacacgttttcaacaa 20520079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 150 - 208
Target Start/End: Original strand, 5981164 - 5981222
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatcact 208  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  5981164 tgaactcaaaaatatcataaaaagactctaaaaatgtgaaatgacggactgtcatcact 5981222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 207 - 320
Target Start/End: Complemental strand, 6127193 - 6127082
Alignment:
Q  207 cttatcttt-gtgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattg 305  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| || || |||||         |||||||||||||||| |||||| ||| ||||    
T  6127193 cttatctttagtgctttgattatgcttgtggtgttgctctacacttaaatttatatctg---ttttttgttgttgttgcttggagacacttaatctattg 6127097  T
Q  306 attaccacttccttt 320  Q
    |||||||||||||||    
T  6127096 attaccacttccttt 6127082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 217 - 323
Target Start/End: Original strand, 9765955 - 9766057
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttc 316  Q
    ||||||||||||||||||||||||||||||||||||||| ||| | ||         |||||||||||||||| |||||||||| |||||||| ||||||    
T  9765955 tgctttgattatgcttgtggtgttgctctacacttagatttaggtttg----tttttgttgttgttgcttggagacactttatctattgattatcacttc 9766050  T
Q  317 ctttgct 323  Q
    |||||||    
T  9766051 ctttgct 9766057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 18722120 - 18722193
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacacga 91  Q
    |||||||||||| || |||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||    
T  18722120 cacgttttaaccgatatcgaatgaacctcatc-tgtgctccaaatcgtgacacgttttcaacaatcgtgacacga 18722193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 14420920 - 14420864
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 206  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  14420920 tgaactaaaaaatatcataaaaagactctaaaaatgtggaatgagagactgtcatca 14420864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 14421055 - 14420980
Alignment:
Q  16 tcacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacacga 91  Q
    |||||||||| ||||||| || ||||||||||||| || | |||||||||||||||||||||||||||||| ||||    
T  14421055 tcacgttttagccaatgttgagtgaacctcatcctgtgttccaaatcgtgacacgttttcaacaatcgtgatacga 14420980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 217 - 320
Target Start/End: Original strand, 19752529 - 19752627
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttc 316  Q
    |||||||||||||||||||||||||| |||||||||||| ||| ||||         |||||||||||||||| |||||||||  |||||||||||||||    
T  19752529 tgctttgattatgcttgtggtgttgcactacacttagatttaggtctg-----ttttgttgttgttgcttggagacactttatatattgattaccacttc 19752623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 217 - 320
Target Start/End: Original strand, 26403365 - 26403464
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttc 316  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||         |||||| ||||||||| |||| ||||| |||||||||||||||    
T  26403365 tgctttgattatgcttgtggtgttgctctacacttagatttaggtctg----tttttgttgttattgcttggagacacattatctattgattaccacttc 26403460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 217 - 323
Target Start/End: Original strand, 5702618 - 5702720
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttc 316  Q
    |||||| ||||||||||||||| |||||||||||||||||||| ||||         |||||||||||| ||| ||||||||| ||||||||||||||||    
T  5702618 tgctttaattatgcttgtggtgatgctctacacttagatctaggtctg----tttttgttgttgttgctaggagacactttattcattgattaccacttc 5702713  T
Q  317 ctttgct 323  Q
     ||||||    
T  5702714 atttgct 5702720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 10663201 - 10663127
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacacga 91  Q
    |||||||||||||||||||| ||||||||||  | |||| |||||| ||||| ||||||||||||||||||||||    
T  10663201 cacgttttaaccaatgtcgattgaacctcattatgtgctccaaatcatgacatgttttcaacaatcgtgacacga 10663127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 33878048 - 33878122
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacacga 91  Q
    |||||||||||||||||||||| |||||||| || || |  |||| |||||||||||||||||||||||||||||    
T  33878048 cacgttttaaccaatgtcgaataaacctcattctgtgttctaaattgtgacacgttttcaacaatcgtgacacga 33878122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 207 - 323
Target Start/End: Complemental strand, 4455999 - 4455888
Alignment:
Q  207 cttatctttgtgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattga 306  Q
    ||||||||||||||||| |||||||||| ||||||||||||||| || || || ||||         | |||||||||||||| ||||||||  ||||||    
T  4455999 cttatctttgtgctttgtttatgcttgttgtgttgctctacactaag-tccaggtctg----tttttgctgttgttgcttggagacactttacacattga 4455905  T
Q  307 ttaccacttcctttgct 323  Q
    |||||||||||||||||    
T  4455904 ttaccacttcctttgct 4455888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 45156862 - 45156918
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 206  Q
    ||||||||||||||||||||||||||||||||||| | |||||| | ||||||||||    
T  45156862 tgaactcaaaaatatcataaaaagactctaaaaatatagaatgataaactgtcatca 45156918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 250
Target Start/End: Original strand, 19175880 - 19175923
Alignment:
Q  207 cttatctttgtgctttgattatgcttgtggtgttgctctacact 250  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  19175880 cttatctttgtgctttgtttatgcttgtggtgttgctctacact 19175923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 255
Target Start/End: Original strand, 4696731 - 4696769
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagat 255  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  4696731 tgctttgattatgtttgtggtgttgctctacacttagat 4696769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 184
Target Start/End: Complemental strand, 12582274 - 12582240
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaat 184  Q
    |||||||||||||||||||||||||||||||||||    
T  12582274 tgaactcaaaaatatcataaaaagactctaaaaat 12582240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 30640699 - 30640625
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacacga 91  Q
    |||||||||||||||  |||| |||| ||||| | || | ||||  |||||||||||||||||||||||||||||    
T  30640699 cacgttttaaccaataccgaaagaacttcatcttgtgatccaaagtgtgacacgttttcaacaatcgtgacacga 30640625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 18826778 - 18826834
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 206  Q
    ||||||||||| |||||||||||||||||||||||    |||||| |||||||||||    
T  18826778 tgaactcaaaattatcataaaaagactctaaaaatagcaaatgactgactgtcatca 18826834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 25228070 - 25228016
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 206  Q
    |||||||||||||||||| |||||||||||||| |||| |||| |||||||||||||    
T  25228070 tgaactcaaaaatatcat-aaaagactctaaaattgtgcaatg-cagactgtcatca 25228016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 207 - 250
Target Start/End: Complemental strand, 7412312 - 7412269
Alignment:
Q  207 cttatctttgtgctttgattatgcttgtggtgttgctctacact 250  Q
    ||||||||||| |||||  |||||||||||||||||||||||||    
T  7412312 cttatctttgttctttgtatatgcttgtggtgttgctctacact 7412269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 320
Target Start/End: Complemental strand, 26287812 - 26287766
Alignment:
Q  274 gttgttgttgcttggatacactttatccattgattaccacttccttt 320  Q
    |||||||||||||||| ||||||||  ||| ||||||||||||||||    
T  26287812 gttgttgttgcttggagacactttacacatagattaccacttccttt 26287766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 320
Target Start/End: Complemental strand, 26313063 - 26313017
Alignment:
Q  274 gttgttgttgcttggatacactttatccattgattaccacttccttt 320  Q
    |||||||||||||||| ||||||||  ||| ||||||||||||||||    
T  26313063 gttgttgttgcttggagacactttacacatagattaccacttccttt 26313017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 320
Target Start/End: Original strand, 31071416 - 31071462
Alignment:
Q  274 gttgttgttgcttggatacactttatccattgattaccacttccttt 320  Q
    |||||||||||||||| ||||||||  ||| ||||||||||||||||    
T  31071416 gttgttgttgcttggagacactttacacatagattaccacttccttt 31071462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 19792983 - 19792926
Alignment:
Q  150 tgaactcaaaaatatcata-aaaagactctaaaaatgtggaatgacagactgtcatca 206  Q
    ||||||||||||||||||| ||||||||||||||||   ||||| | |||||||||||    
T  19792983 tgaactcaaaaatatcataaaaaagactctaaaaatagtgaatggccgactgtcatca 19792926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 263
Target Start/End: Original strand, 7493210 - 7493242
Alignment:
Q  231 ttgtggtgttgctctacacttagatctagatct 263  Q
    ||||||||||||||||||||||||| |||||||    
T  7493210 ttgtggtgttgctctacacttagatttagatct 7493242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 22223291 - 22223331
Alignment:
Q  167 taaaaagactctaaaaatgtggaatgacagactgtcatcac 207  Q
    ||||||||||| |||||||||  ||||||||||||||||||    
T  22223291 taaaaagactcaaaaaatgtgatatgacagactgtcatcac 22223331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 22229633 - 22229673
Alignment:
Q  167 taaaaagactctaaaaatgtggaatgacagactgtcatcac 207  Q
    ||||||||||| |||||||||  ||||||||||||||||||    
T  22229633 taaaaagactcaaaaaatgtgatatgacagactgtcatcac 22229673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 9e-30; HSPs: 61)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 5721781 - 5721855
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacacga 91  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  5721781 cacgatttaaccaatgtcgaatgaacctcatcctgtgcttcaaatcgtgacacgttttcaacaatcgtgacacga 5721855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 19861097 - 19861169
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacac 89  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||    
T  19861097 cacgttttaaccaatgtcgaatgaacctcatcctgtgctccaaatcgtgatacgttttcaacaatcgtgacac 19861169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 207 - 323
Target Start/End: Original strand, 38152563 - 38152677
Alignment:
Q  207 cttatctttgtgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattga 306  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||         |||||||||||||||| |||||| || ||||||    
T  38152563 cttatctttgtgctttgattatgcttgtggtgttgctatacacttagatctaggtctg--ttttattgttgttgttgcttggaaacacttcatacattga 38152660  T
Q  307 ttaccacttcctttgct 323  Q
    |||||||||| ||||||    
T  38152661 ttaccacttcatttgct 38152677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 217 - 323
Target Start/End: Original strand, 5269326 - 5269431
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttc 316  Q
    ||||||||||||||||||||||||||||||||||||||||||| | |          |||||||||||||||| ||||||||||||||||||||||||||    
T  5269326 tgctttgattatgcttgtggtgttgctctacacttagatctaggtata-tttttgttgttgttgttgcttggagacactttatccattgattaccacttc 5269424  T
Q  317 ctttgct 323  Q
    |||||||    
T  5269425 ctttgct 5269431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 15431350 - 15431280
Alignment:
Q  21 ttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacacga 91  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||    
T  15431350 ttttaaccaatgtcgaatgaacctcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacga 15431280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 15437964 - 15437894
Alignment:
Q  21 ttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacacga 91  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||    
T  15437964 ttttaaccaatgtcgaatgaacctcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacga 15437894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 18910794 - 18910720
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacacga 91  Q
    |||||||||||||||||||||||||||||||| | ||||  ||||||||||||||||||||||||||||||||||    
T  18910794 cacgttttaaccaatgtcgaatgaacctcatcatgtgctctaaatcgtgacacgttttcaacaatcgtgacacga 18910720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 217 - 323
Target Start/End: Original strand, 25862157 - 25862259
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttc 316  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||         |||||||||||||||| |||||||||| |||||||||||||||    
T  25862157 tgctttgattatgcttgtggtgttgctctacacttagatttaggtctg----tttttgttgttgttgcttggagacactttatctattgattaccacttc 25862252  T
Q  317 ctttgct 323  Q
    |||||||    
T  25862253 ctttgct 25862259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 33410772 - 33410846
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacacga 91  Q
    |||||||||||||||||||||||||||||| | | ||||||||||||| ||||||||||||||||||||||||||    
T  33410772 cacgttttaaccaatgtcgaatgaacctcaccttgtgcttcaaatcgtaacacgttttcaacaatcgtgacacga 33410846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 207 - 320
Target Start/End: Complemental strand, 3777522 - 3777413
Alignment:
Q  207 cttatctttgtgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattga 306  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||         |||||||||||||||| ||||||||  ||||||    
T  3777522 cttatctttgtgctttgattatgcttgtggttttgttctacacttagatctaggtctg----tttttgttgttgttgcttggagacactttacacattga 3777427  T
Q  307 ttaccacttccttt 320  Q
    ||||||||||||||    
T  3777426 ttaccacttccttt 3777413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 219 - 323
Target Start/End: Complemental strand, 54867144 - 54867042
Alignment:
Q  219 ctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttcct 318  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||         |||||||||||||||| |||||||||| |||||||||||||||||    
T  54867144 ctttgattatgcttgtggtgttgctctacacttagatctatgtctg--tttttttgttgttgttgcttggagacactttatctattgattaccacttcct 54867047  T
Q  319 ttgct 323  Q
    |||||    
T  54867046 ttgct 54867042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 3798606 - 3798677
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgaca 88  Q
    |||||||||||||||||||||||||||||||||| || | ||||||||||||| ||||||||||||||||||    
T  3798606 cacgttttaaccaatgtcgaatgaacctcatcctttgttccaaatcgtgacacattttcaacaatcgtgaca 3798677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 5680659 - 5680588
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgaca 88  Q
    ||||||||||||||||||||||||||||||| |||||||  |||| ||||||||||||||||||||||||||    
T  5680659 cacgttttaaccaatgtcgaatgaacctcattctatgctctaaattgtgacacgttttcaacaatcgtgaca 5680588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 217 - 323
Target Start/End: Complemental strand, 10047341 - 10047239
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttc 316  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||          |||||| ||||||||| ||||||||||||||||||||||||||    
T  10047341 tgctttgattatgcttgtggtgttgctctacacttagatctatgtct----atttttgttgttattgcttggagacactttatccattgattaccacttc 10047246  T
Q  317 ctttgct 323  Q
    |||||||    
T  10047245 ctttgct 10047239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 14571082 - 14571024
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatcact 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  14571082 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagaccgtcatcact 14571024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 19865453 - 19865527
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacacga 91  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||| || ||||||| |||||||||||||    
T  19865453 cacgttttaaccaatgtcgaatgaacctcatcctgtgctccaaatcgtgatacattttcaataatcgtgacacga 19865527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 5680525 - 5680469
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  5680525 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagtctgtcatca 5680469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 217 - 323
Target Start/End: Original strand, 6743550 - 6743657
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatct-ggnnnnnnnngttgttgttgcttggatacactttatccattgattaccactt 315  Q
    |||||||||||||||||||||||||||||||||| |||| ||||| | ||        |||||||||| ||||| |||||||||| ||||||||||||||    
T  6743550 tgctttgattatgcttgtggtgttgctctacactcagatttagatttaggtttgttttgttgttgttgtttggagacactttatctattgattaccactt 6743649  T
Q  316 cctttgct 323  Q
    ||||||||    
T  6743650 cctttgct 6743657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 5669818 - 5669744
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacacga 91  Q
    |||||||||||||||||||||| ||||||||  | || ||||||| |||||||||||||||||||||||||||||    
T  5669818 cacgttttaaccaatgtcgaataaacctcattttgtgtttcaaattgtgacacgttttcaacaatcgtgacacga 5669744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 217 - 323
Target Start/End: Original strand, 42599709 - 42599814
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttc 316  Q
    |||||||||||||||||||||||||||||||| |||||||||| | | |        ||||||||||||||||  ||||||||| |||||||||||||||    
T  42599709 tgctttgattatgcttgtggtgttgctctacatttagatctaggt-ttgtttgttttgttgttgttgcttggagtcactttatctattgattaccacttc 42599807  T
Q  317 ctttgct 323  Q
    |||||||    
T  42599808 ctttgct 42599814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 49269925 - 49269851
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacacga 91  Q
    ||||||||||||||||||||||||| |||||  | | ||||||||||||||||||||||||||||||||| ||||    
T  49269925 cacgttttaaccaatgtcgaatgaatctcattttgttcttcaaatcgtgacacgttttcaacaatcgtgatacga 49269851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 53093902 - 53093837
Alignment:
Q  26 accaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacacga 91  Q
    ||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||| |||||    
T  53093902 accaatgtcgaatgaacctcatcctgtgctccaattcgtgacacgttttcaacaatcgtgtcacga 53093837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 207 - 323
Target Start/End: Original strand, 16630805 - 16630917
Alignment:
Q  207 cttatctttgtgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattga 306  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||||| | ||         ||||||| |||||||| ||||||||  ||||||    
T  16630805 cttatctttgttctttgattatgcttgtggtgttgctttacacttagatctaggtttg----tttttgttgttgctgcttggagacactttacacattga 16630900  T
Q  307 ttaccacttcctttgct 323  Q
    |||||| ||||||||||    
T  16630901 ttaccagttcctttgct 16630917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 216 - 323
Target Start/End: Original strand, 16624143 - 16624246
Alignment:
Q  216 gtgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccactt 315  Q
    ||||||||||||| ||||||||||||||||||||||| |||||| ||||         |||||||||||||||| ||||||||  ||||||||| |||||    
T  16624143 gtgctttgattattcttgtggtgttgctctacacttaaatctaggtctg----tttttgttgttgttgcttggagacactttacacattgattatcactt 16624238  T
Q  316 cctttgct 323  Q
    ||||||||    
T  16624239 cctttgct 16624246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 9717141 - 9717067
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacacga 91  Q
    |||| |||||||||||||||| |||||||||||| ||||  |||| ||| |||||||||||||||||||||||||    
T  9717141 cacgatttaaccaatgtcgaacgaacctcatcctgtgctctaaattgtgccacgttttcaacaatcgtgacacga 9717067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 207 - 323
Target Start/End: Original strand, 5396797 - 5396911
Alignment:
Q  207 cttatctttgtgctttgattatgcttgtggtgttgctctacac---ttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccat 303  Q
    ||||||||||||||||| |||||||||||||||||||||||||   |||| ||||| ||||         |||||||||||||||| ||||||||  |||    
T  5396797 cttatctttgtgctttgtttatgcttgtggtgttgctctacactaattag-tctaggtctg----tttttgttgttgttgcttggagacactttacacat 5396891  T
Q  304 tgattaccacttcctttgct 323  Q
    ||||||||||||||||||||    
T  5396892 tgattaccacttcctttgct 5396911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 37104071 - 37104124
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacg 70  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  37104071 cacgatttaaccaatgtcgaatgaacctcatcctgtgcttcaaatcgtgacacg 37104124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 40617624 - 40617696
Alignment:
Q  19 cgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacacga 91  Q
    |||||||| ||||||||||||||||||||| | || |  |||||||||||||||||||||||||||| |||||    
T  40617624 cgttttaatcaatgtcgaatgaacctcatcttgtgttctaaatcgtgacacgttttcaacaatcgtggcacga 40617696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 217 - 320
Target Start/End: Original strand, 3796655 - 3796755
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttc 316  Q
    ||||||||||||||||||| |||| |||||||||||||| ||| ||||         |||||||||||||||| |||||||||| |||||||| ||||||    
T  3796655 tgctttgattatgcttgtgatgttactctacacttagatttaggtctg---atttttgttgttgttgcttggagacactttatctattgattatcacttc 3796751  T
Q  317 cttt 320  Q
    ||||    
T  3796752 cttt 3796755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 220 - 323
Target Start/End: Complemental strand, 5147636 - 5147537
Alignment:
Q  220 tttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttcctt 319  Q
    |||||||||| ||||||||||||||||||||||||| ||| ||||         ||||||||| |||||| ||||||||  |||||||||||||||||||    
T  5147636 tttgattatgtttgtggtgttgctctacacttagatttaggtctg----ttattgttgttgtttcttggagacactttacacattgattaccacttcctt 5147541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 12237540 - 12237470
Alignment:
Q  21 ttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacacga 91  Q
    |||||||||||||||||||||||||||||| |  || |||| ||||||| ||||| |||||||||||||||    
T  12237540 ttttaaccaatgtcgaatgaacctcatcctgtattttaaattgtgacacattttcgacaatcgtgacacga 12237470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 217 - 320
Target Start/End: Complemental strand, 24333771 - 24333674
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttc 316  Q
    |||||||||||||||||||   ||||||||||||||||||||| ||||         |||||||||| ||||| |||||||||| |||||||||||||||    
T  24333771 tgctttgattatgcttgtg---ttgctctacacttagatctaggtctg---ttttttgttgttgttgtttggagacactttatctattgattaccacttc 24333678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 316
Target Start/End: Complemental strand, 39245953 - 39245860
Alignment:
Q  220 tttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttc 316  Q
    ||||||||||| |||||||||||||||||||||||| ||| ||||         |||||||||| ||||| |||||||||| |||||||||||||||    
T  39245953 tttgattatgcctgtggtgttgctctacacttagatttaggtctg---ttttttgttgttgttgtttggagacactttatctattgattaccacttc 39245860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 208
Target Start/End: Complemental strand, 49269789 - 49269733
Alignment:
Q  152 aactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatcact 208  Q
    ||||||||||||||||||||| |||||||||||||  |||||| |||||||||||||    
T  49269789 aactcaaaaatatcataaaaaaactctaaaaatgtaaaatgactgactgtcatcact 49269733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 323
Target Start/End: Complemental strand, 5143218 - 5143119
Alignment:
Q  220 tttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttcctt 319  Q
    |||||||||| ||||||||||| ||||||||||||| ||| ||||         |||||||||| ||||| ||||||||  |||||||||||||||||||    
T  5143218 tttgattatgtttgtggtgttgttctacacttagatttaggtctg----tttttgttgttgttgtttggagacactttacacattgattaccacttcctt 5143123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 209
Target Start/End: Original strand, 52007375 - 52007434
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatcactt 209  Q
    ||||||||| |||||||||||||||||||||||||   ||||||| ||||||||||||||    
T  52007375 tgaactcaacaatatcataaaaagactctaaaaatagcgaatgactgactgtcatcactt 52007434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 24045001 - 24045058
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatcac 207  Q
    ||||||||||||||||| |||||||||||||||||   ||||||| ||||||||||||    
T  24045001 tgaactcaaaaatatcaaaaaaagactctaaaaataacgaatgactgactgtcatcac 24045058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 53010402 - 53010458
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 206  Q
    |||||||||||||||||||||||||||||||||||   ||||||| |||| ||||||    
T  53010402 tgaactcaaaaatatcataaaaagactctaaaaataatgaatgactgactatcatca 53010458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 209
Target Start/End: Complemental strand, 3718392 - 3718333
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatcactt 209  Q
    ||||||||||||||||||||||| |||||||||||   ||||||  ||||||||||||||    
T  3718392 tgaactcaaaaatatcataaaaatactctaaaaatagtgaatgagtgactgtcatcactt 3718333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 245
Target Start/End: Original strand, 8689609 - 8689647
Alignment:
Q  207 cttatctttgtgctttgattatgcttgtggtgttgctct 245  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  8689609 cttatctttgtgctttgtttatgcttgtggtgttgctct 8689647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 206
Target Start/End: Complemental strand, 12782160 - 12782106
Alignment:
Q  152 aactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 206  Q
    |||||||||||||||||||| ||||||||||||   ||||||| |||||||||||    
T  12782160 aactcaaaaatatcataaaatgactctaaaaatagcgaatgactgactgtcatca 12782106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 207
Target Start/End: Complemental strand, 27013286 - 27013228
Alignment:
Q  150 tgaactcaaaaatatcataaaaa-gactctaaaaatgtggaatgacagactgtcatcac 207  Q
    ||||||||||||||||||||||| ||||||||||||   ||||||| ||||||||||||    
T  27013286 tgaactcaaaaatatcataaaaaagactctaaaaatagcgaatgactgactgtcatcac 27013228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 184
Target Start/End: Complemental strand, 40794248 - 40794214
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaat 184  Q
    |||||||||||||||||||||||||||||||||||    
T  40794248 tgaactcaaaaatatcataaaaagactctaaaaat 40794214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 207 - 259
Target Start/End: Complemental strand, 37781836 - 37781783
Alignment:
Q  207 cttatctttgt-gctttgattatgcttgtggtgttgctctacacttagatctag 259  Q
    ||||||||||| ||||||| ||||||||||||||||||  ||||||||||||||    
T  37781836 cttatctttgttgctttgaatatgcttgtggtgttgcttcacacttagatctag 37781783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 29324035 - 29323979
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 206  Q
    ||||||||||| |||||||||||||||||||||||    |||||| |||||||||||    
T  29324035 tgaactcaaaattatcataaaaagactctaaaaatagcaaatgactgactgtcatca 29323979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 44809848 - 44809904
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 206  Q
    ||||||||||| |||||||||||||||||||||||    |||||| |||||||||||    
T  44809848 tgaactcaaaattatcataaaaagactctaaaaatagcaaatgactgactgtcatca 44809904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 15430709 - 15430767
Alignment:
Q  150 tgaactcaaaaatatcat-aaaaagactctaaaaatgtggaatgacagactgtcatcac 207  Q
    |||||||||||||||||| ||||||||||| |||||   ||||||| ||||||||||||    
T  15430709 tgaactcaaaaatatcataaaaaagactctgaaaataacgaatgactgactgtcatcac 15430767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 15437323 - 15437381
Alignment:
Q  150 tgaactcaaaaatatcat-aaaaagactctaaaaatgtggaatgacagactgtcatcac 207  Q
    |||||||||||||||||| ||||||||||| |||||   ||||||| ||||||||||||    
T  15437323 tgaactcaaaaatatcataaaaaagactctgaaaataacgaatgactgactgtcatcac 15437381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 207
Target Start/End: Complemental strand, 19826750 - 19826700
Alignment:
Q  157 aaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatcac 207  Q
    |||||| |||||||||||||||||||||   ||||||| ||||||||||||    
T  19826750 aaaaatttcataaaaagactctaaaaatagcgaatgactgactgtcatcac 19826700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 184
Target Start/End: Complemental strand, 21419035 - 21419001
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaat 184  Q
    |||||||||||||||||||||||||| ||||||||    
T  21419035 tgaactcaaaaatatcataaaaagacactaaaaat 21419001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 320
Target Start/End: Original strand, 28468714 - 28468760
Alignment:
Q  274 gttgttgttgcttggatacactttatccattgattaccacttccttt 320  Q
    |||||||||||||||| ||||||||  ||| ||||||||||||||||    
T  28468714 gttgttgttgcttggagacactttacacatagattaccacttccttt 28468760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 320
Target Start/End: Original strand, 31985820 - 31985866
Alignment:
Q  274 gttgttgttgcttggatacactttatccattgattaccacttccttt 320  Q
    |||||||||||||||| ||||||||  ||| ||||||||||||||||    
T  31985820 gttgttgttgcttggagacactttacacatagattaccacttccttt 31985866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 184
Target Start/End: Original strand, 34320788 - 34320822
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaat 184  Q
    ||||||||||| |||||||||||||||||||||||    
T  34320788 tgaactcaaaattatcataaaaagactctaaaaat 34320822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 323
Target Start/End: Original strand, 1983487 - 1983536
Alignment:
Q  274 gttgttgttgcttggatacactttatccattgattaccacttcctttgct 323  Q
    |||||||||||||| |  ||||||||||||||||||  ||||||||||||    
T  1983487 gttgttgttgcttgaacccactttatccattgattattacttcctttgct 1983536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 262
Target Start/End: Complemental strand, 4956147 - 4956102
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatc 262  Q
    ||||||||||||| |||||||||||||  ||||||| |||||||||    
T  4956147 tgctttgattatgtttgtggtgttgcttcacacttaaatctagatc 4956102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #56
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 206
Target Start/End: Complemental strand, 19819999 - 19819950
Alignment:
Q  157 aaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 206  Q
    |||||||||||||||||||| |||||||   ||||||| |||||||||||    
T  19819999 aaaaatatcataaaaagactttaaaaatagcgaatgactgactgtcatca 19819950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #57
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 27677909 - 27677966
Alignment:
Q  150 tgaactcaaaaatatcat-aaaaagactctaaaaatgtggaatgacagactgtcatca 206  Q
    |||||||||||||||||| |||||||||||||||||   |||| || |||||||||||    
T  27677909 tgaactcaaaaatatcataaaaaagactctaaaaatagtgaataactgactgtcatca 27677966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #58
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 320
Target Start/End: Original strand, 36315398 - 36315446
Alignment:
Q  274 gttgttgttgcttggatacactttat--ccattgattaccacttccttt 320  Q
    |||||||||||||||| ||||||| |  |||||||||||||||||||||    
T  36315398 gttgttgttgcttggagacactttttgtccattgattaccacttccttt 36315446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #59
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 320
Target Start/End: Original strand, 36329607 - 36329655
Alignment:
Q  274 gttgttgttgcttggatacactttat--ccattgattaccacttccttt 320  Q
    |||||||||||||||| ||||||| |  |||||||||||||||||||||    
T  36329607 gttgttgttgcttggagacactttttgtccattgattaccacttccttt 36329655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #60
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 44164058 - 44164001
Alignment:
Q  150 tgaactcaaaaatatcata-aaaagactctaaaaatgtggaatgacagactgtcatca 206  Q
    ||||||||||||||||||| |||||||| |||||||   ||||||| |||||||||||    
T  44164058 tgaactcaaaaatatcataaaaaagactttaaaaatagtgaatgactgactgtcatca 44164001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #61
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 206
Target Start/End: Complemental strand, 48636749 - 48636709
Alignment:
Q  166 ataaaaagactctaaaaatgtggaatgacagactgtcatca 206  Q
    |||||||||||||||||||   |||||||||||||||||||    
T  48636749 ataaaaagactctaaaaataacgaatgacagactgtcatca 48636709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 9e-30; HSPs: 63)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 18645551 - 18645625
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacacga 91  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  18645551 cacgatttaaccaatgtcgaatgaacctcatcctgtgcttcaaatcgtgacacgttttcaacaatcgtgacacga 18645625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 207 - 320
Target Start/End: Original strand, 8370602 - 8370711
Alignment:
Q  207 cttatctttgtgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattga 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||         |||||||||||||||| ||||||||  ||||||    
T  8370602 cttatctttgtgctttgattatgcttgtggtgttgctctacacttagatctaggtctg----tttttgttgttgttgcttggagacactttacacattga 8370697  T
Q  307 ttaccacttccttt 320  Q
    ||||| ||||||||    
T  8370698 ttacctcttccttt 8370711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 207 - 323
Target Start/End: Complemental strand, 27038262 - 27038150
Alignment:
Q  207 cttatctttgtgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattga 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||| | ||||||||  ||||||    
T  27038262 cttatctttgtgctttgattatgcttgtggtgttgctctacacttagatctagatctg----tttttgttgttgttgcttgaagacactttacacattga 27038167  T
Q  307 ttaccacttcctttgct 323  Q
    |||||| ||| ||||||    
T  27038166 ttaccatttcatttgct 27038150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 207 - 323
Target Start/End: Original strand, 30709906 - 30710018
Alignment:
Q  207 cttatctttgtgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattga 306  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||         |||||||||||||||| ||||||||  ||||||    
T  30709906 cttatctttgtgctttgattatgcttatggtgttgctctaaacttagatctaggtctg----tttttgttgttgttgcttggagacactttacacattga 30710001  T
Q  307 ttaccacttcctttgct 323  Q
    |||||||||||||||||    
T  30710002 ttaccacttcctttgct 30710018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 538205 - 538131
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacacga 91  Q
    |||||||||||||||||||||||||| |||| || |||| |||||||||||||||||||||||||||||||||||    
T  538205 cacgttttaaccaatgtcgaatgaacttcattctgtgctccaaatcgtgacacgttttcaacaatcgtgacacga 538131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 10884208 - 10884134
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacacga 91  Q
    |||||||||| ||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||    
T  10884208 cacgttttaatcaatgtcgaatgaacctaatcctgtgcttcaaatcgtgacaggttttcaacaatcgtgacacga 10884134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 217 - 323
Target Start/End: Original strand, 40592908 - 40593010
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttc 316  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||         |||||||||||||||| ||| ||||||||||||||||||||||    
T  40592908 tgctttgattatgcttgtggtgttgctctacacttagatttaggtctg----tttttgttgttgttgcttggagacattttatccattgattaccacttc 40593003  T
Q  317 ctttgct 323  Q
    |||||||    
T  40593004 ctttgct 40593010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 16185600 - 16185657
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatcac 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16185600 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatcac 16185657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 207 - 323
Target Start/End: Complemental strand, 27026917 - 27026805
Alignment:
Q  207 cttatctttgtgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattga 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||          ||||||||||||||| ||||||||  ||||||    
T  27026917 cttatctttgtgctttgattatgcttgtggtgttgctctacacttagatctaggtctg----tttttcttgttgttgcttggagacactttacacattga 27026822  T
Q  307 ttaccacttcctttgct 323  Q
    |||||| ||| ||||||    
T  27026821 ttaccatttcatttgct 27026805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 35411863 - 35411793
Alignment:
Q  21 ttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacacga 91  Q
    |||||||||||||||||||||||||||||| || | ||||||||||||||||||| |||||||||||||||    
T  35411863 ttttaaccaatgtcgaatgaacctcatcctgtgttccaaatcgtgacacgttttcgacaatcgtgacacga 35411793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 6445471 - 6445546
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacg-ttttcaacaatcgtgacacga 91  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||  |||||||||||||    
T  6445471 cacgttttaaccaatgtcgaatgaacctcatcatgtgcttcaaatcgtgacacgtttttcagtaatcgtgacacga 6445546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 217 - 321
Target Start/End: Complemental strand, 26298950 - 26298844
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnn--gttgttgttgcttggatacactttatccattgattaccact 314  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||           |||||||||| ||||| ||||||||||||||||||||||||    
T  26298950 tgctttgattatgcttgtggtgttgctctacacttagatttaggtctgtttttgttgttgttgttgttgtttggagacactttatccattgattaccact 26298851  T
Q  315 tcctttg 321  Q
    |||||||    
T  26298850 tcctttg 26298844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 220 - 323
Target Start/End: Complemental strand, 48438173 - 48438074
Alignment:
Q  220 tttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttcctt 319  Q
    |||||||||||||||||||||||||||||||||||||||| ||||         |||||||||||||||| | |||||||| ||||||||||| ||||||    
T  48438173 tttgattatgcttgtggtgttgctctacacttagatctaggtctg----tttttgttgttgttgcttggagatactttatctattgattaccatttcctt 48438078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 52198491 - 52198424
Alignment:
Q  21 ttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgaca 88  Q
    |||||||||||||||||||||||||||| | ||||  |||||||||||||||||||||||||||||||    
T  52198491 ttttaaccaatgtcgaatgaacctcatcatgtgctctaaatcgtgacacgttttcaacaatcgtgaca 52198424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 6922080 - 6922006
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacacga 91  Q
    |||||||| |||||||| |||||||||||||| | |||| ||||||||||||||||||| |||||||||||||||    
T  6922080 cacgttttcaccaatgttgaatgaacctcatcatgtgctccaaatcgtgacacgttttcgacaatcgtgacacga 6922006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 23299363 - 23299437
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacacga 91  Q
    |||||||||| ||||||||||||||||||||| | |||| ||||| ||||||||||||| |||||||||||||||    
T  23299363 cacgttttaatcaatgtcgaatgaacctcatcttgtgctccaaattgtgacacgttttcgacaatcgtgacacga 23299437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 207 - 321
Target Start/End: Original strand, 39040108 - 39040216
Alignment:
Q  207 cttatctttgtgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattga 306  Q
    ||||||||||||||||| |||||||||||||||||||||||||| || ||||| ||||         |||||||||||||||| ||||||||  ||||||    
T  39040108 cttatctttgtgctttgtttatgcttgtggtgttgctctacactaag-tctaggtctg-----ttttgttgttgttgcttggagacactttacacattga 39040201  T
Q  307 ttaccacttcctttg 321  Q
    |||||||||||||||    
T  39040202 ttaccacttcctttg 39040216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 227 - 320
Target Start/End: Original strand, 47924007 - 47924093
Alignment:
Q  227 atgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttccttt 320  Q
    ||||||||||||||||||||||||||||||||| ||||          ||||||||||||||| ||||||||||||||||||||||||||||||    
T  47924007 atgcttgtggtgttgctctacacttagatctaggtctgttt-------ttgttgttgcttggagacactttatccattgattaccacttccttt 47924093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 53815158 - 53815105
Alignment:
Q  21 ttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgtttt 74  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  53815158 ttttaaccaatgtcgaatgaacctcatcctatgtttcaaatcgtgacacgtttt 53815105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 54736661 - 54736730
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtga 86  Q
    |||||||||||||||  |||||||||||||||||||||||||||| |||||| ||||| |||||||||||    
T  54736661 cacgttttaaccaataccgaatgaacctcatcctatgcttcaaattgtgacatgtttttaacaatcgtga 54736730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 208 - 259
Target Start/End: Complemental strand, 16264320 - 16264269
Alignment:
Q  208 ttatctttgtgctttgattatgcttgtggtgttgctctacacttagatctag 259  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  16264320 ttatctttgtgctttgattatgtttgtggtgttgctctacacttagatctag 16264269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 16185466 - 16185540
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacacga 91  Q
    ||||||||| |||||||||| ||||||||||||| ||||  ||| ||||||| ||||||||||||||||||||||    
T  16185466 cacgttttagccaatgtcgagtgaacctcatcctgtgctctaaaacgtgacatgttttcaacaatcgtgacacga 16185540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 150 - 212
Target Start/End: Original strand, 34984702 - 34984764
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatcacttatc 212  Q
    |||||||||||||||||||||||||||||||||||   ||||||| |||||||||||||||||    
T  34984702 tgaactcaaaaatatcataaaaagactctaaaaataacgaatgactgactgtcatcacttatc 34984764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 210 - 264
Target Start/End: Complemental strand, 35925451 - 35925397
Alignment:
Q  210 atctttgtgctttgattatgcttgtggtgttgctctacacttagatctagatctg 264  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  35925451 atctttgtgttttgattatgcttgtggtgttgctctacacttagatctaggtctg 35925397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 35411733 - 35411676
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatg-tggaatgacagactgtcatca 206  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  35411733 tgaactcaaaaatatcataaaaagactctaaaaatgttgaaatgacagactgtcatca 35411676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 55032747 - 55032800
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacg 70  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  55032747 cacgttttaaccaatgtcgaatgaacctcatcatgtgcttcaaatcgtgacacg 55032800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 31548607 - 31548551
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 206  Q
    |||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||    
T  31548607 tgaactcaaaaatatcataaaaagactctaaaaatgtgaaatgacgaactgtcatca 31548551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 28265191 - 28265116
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacac-gttttcaacaatcgtgacacga 91  Q
    |||||||||||||||||||||||||| ||||| | ||||||||||||||||||  ||||||  |||||||||||||    
T  28265191 cacgttttaaccaatgtcgaatgaacttcatcatgtgcttcaaatcgtgacacatttttcagtaatcgtgacacga 28265116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 217 - 316
Target Start/End: Complemental strand, 40844614 - 40844519
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttc 316  Q
    |||||||||||||||||| |||||||||||||||||||| ||| | ||         |||||||||||||||| |||||||||| |||||||||||||||    
T  40844614 tgctttgattatgcttgtagtgttgctctacacttagatttaggtttg----tttttgttgttgttgcttggagacactttatctattgattaccacttc 40844519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 222 - 320
Target Start/End: Original strand, 3716132 - 3716226
Alignment:
Q  222 tgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttccttt 320  Q
    |||||||||||||||||||||||||||||||||| ||  ||||         |||||||||||||| | |||||||||| |||||||||||||||||||    
T  3716132 tgattatgcttgtggtgttgctctacacttagatttatgtctg----tttttgttgttgttgcttgtagacactttatctattgattaccacttccttt 3716226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 217 - 323
Target Start/End: Original strand, 6794838 - 6794939
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttc 316  Q
    ||||||||||||||||||| || | |||||||||||||| ||| ||||         |||||||||||||||| ||||||| || |||||||||||||||    
T  6794838 tgctttgattatgcttgtgatgctactctacacttagatttaggtctg-----ttttgttgttgttgcttggagacactttttctattgattaccacttc 6794932  T
Q  317 ctttgct 323  Q
    |||||||    
T  6794933 ctttgct 6794939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 225 - 323
Target Start/End: Complemental strand, 36029059 - 36028965
Alignment:
Q  225 ttatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttcctttgct 323  Q
    |||||||||||||||||||||| |||||||||||| ||||         |||||||||||||||| ||||||||  |||||||||||||||| ||||||    
T  36029059 ttatgcttgtggtgttgctctatacttagatctaggtctg----tttttgttgttgttgcttggagacactttacacattgattaccacttcatttgct 36028965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 19302308 - 19302365
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatcac 207  Q
    ||||||||||||||||||||||||||||||||||| || |||||| |||| |||||||    
T  19302308 tgaactcaaaaatatcataaaaagactctaaaaatatgaaatgacggactatcatcac 19302365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 53815027 - 53814971
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 206  Q
    |||||||||||||||||||||||||||||||||||   ||||||| |||||||||||    
T  53815027 tgaactcaaaaatatcataaaaagactctaaaaatagtgaatgactgactgtcatca 53814971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 54460423 - 54460367
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 206  Q
    |||||||||||||||||||||||||||||||||||   ||||||| |||||||||||    
T  54460423 tgaactcaaaaatatcataaaaagactctaaaaatagtgaatgactgactgtcatca 54460367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 320
Target Start/End: Complemental strand, 1417227 - 1417129
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttc 316  Q
    ||||||||||||||||||| || | |||||||||||||| ||| ||||         |||||||||||||||| ||||||||  ||||||||||||||||    
T  1417227 tgctttgattatgcttgtgatgctactctacacttagatttaggtctg-----ttttgttgttgttgcttggagacactttacacattgattaccacttc 1417133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 205
Target Start/End: Complemental strand, 9380067 - 9380012
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatc 205  Q
    |||||||||||||||||||||||||||||||||||   ||||||| ||||||||||    
T  9380067 tgaactcaaaaatatcataaaaagactctaaaaatagcgaatgactgactgtcatc 9380012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 217 - 323
Target Start/End: Original strand, 1417615 - 1417716
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttc 316  Q
    ||||||||||||||||||| |||| |||||||||||||| ||  | ||         |||||||||||||| | |||||||||| |||||||||||||||    
T  1417615 tgctttgattatgcttgtgatgttactctacacttagatttatgtatg-----ttttgttgttgttgcttgaagacactttatctattgattaccacttc 1417709  T
Q  317 ctttgct 323  Q
    |||||||    
T  1417710 ctttgct 1417716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 217 - 323
Target Start/End: Original strand, 24695289 - 24695390
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttc 316  Q
    ||||||||||||||||||| |||||||||| |||||||| ||| ||||         |||||||||||||| | ||| |||||| |||||||||||||||    
T  24695289 tgctttgattatgcttgtg-tgttgctctatacttagatttagctctg----tttttgttgttgttgcttgaagacattttatctattgattaccacttc 24695383  T
Q  317 ctttgct 323  Q
    |||||||    
T  24695384 ctttgct 24695390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 274 - 320
Target Start/End: Complemental strand, 47649650 - 47649604
Alignment:
Q  274 gttgttgttgcttggatacactttatccattgattaccacttccttt 320  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||    
T  47649650 gttgttgttgcttggagacactttatctattgattaccacttccttt 47649604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 25929556 - 25929605
Alignment:
Q  207 cttatctttgt-gctttgattatgcttgtggtgttgctctacacttagat 255  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  25929556 cttatctttgttgctttgattatgtttgtggtgttgctctacacttagat 25929605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 220 - 264
Target Start/End: Original strand, 3328484 - 3328528
Alignment:
Q  220 tttgattatgcttgtggtgttgctctacacttagatctagatctg 264  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||    
T  3328484 tttgattatgcttgtggtgttgctctacacttagatttaggtctg 3328528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 16243222 - 16243166
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 206  Q
    |||||||||||||||||||||||||||||||||||   ||||||| || ||||||||    
T  16243222 tgaactcaaaaatatcataaaaagactctaaaaatagcgaatgactgattgtcatca 16243166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 9380198 - 9380147
Alignment:
Q  40 aacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacacga 91  Q
    ||||||||||| ||||  ||||||||||||||||||||||| ||||||||||    
T  9380198 aacctcatcctgtgctctaaatcgtgacacgttttcaacaaccgtgacacga 9380147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 264
Target Start/End: Original strand, 18553008 - 18553055
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctg 264  Q
    ||||||||||||| ||||||||||||||||||||||||| ||| ||||    
T  18553008 tgctttgattatgtttgtggtgttgctctacacttagatttagttctg 18553055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 184
Target Start/End: Complemental strand, 10880832 - 10880798
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaat 184  Q
    |||||||||||||||||||||||||||||||||||    
T  10880832 tgaactcaaaaatatcataaaaagactctaaaaat 10880798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 274 - 320
Target Start/End: Original strand, 33386844 - 33386890
Alignment:
Q  274 gttgttgttgcttggatacactttatccattgattaccacttccttt 320  Q
    |||||||||||||||| ||||||||  ||||||||||||||||||||    
T  33386844 gttgttgttgcttggagacactttacacattgattaccacttccttt 33386890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 184
Target Start/End: Complemental strand, 43808934 - 43808900
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaat 184  Q
    |||||||||||||||||||||||||||||||||||    
T  43808934 tgaactcaaaaatatcataaaaagactctaaaaat 43808900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 29344716 - 29344773
Alignment:
Q  150 tgaactcaaaaatatcataa-aaagactctaaaaatgtggaatgacagactgtcatca 206  Q
    |||||||||||||||||||| |||||||||||||||   ||||||| |||||||||||    
T  29344716 tgaactcaaaaatatcataagaaagactctaaaaatagtgaatgactgactgtcatca 29344773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 19305491 - 19305547
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 206  Q
    ||||||||||||||| ||||||||||||||||||| || |||||  || ||||||||    
T  19305491 tgaactcaaaaatattataaaaagactctaaaaatatgaaatgatggattgtcatca 19305547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 41976377 - 41976321
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 206  Q
    ||||||||||||||| ||||||| |||||||||||   ||||||| |||||||||||    
T  41976377 tgaactcaaaaatattataaaaacactctaaaaatagcgaatgactgactgtcatca 41976321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 255
Target Start/End: Complemental strand, 25795735 - 25795704
Alignment:
Q  224 attatgcttgtggtgttgctctacacttagat 255  Q
    ||||||||||||||||||||||||||||||||    
T  25795735 attatgcttgtggtgttgctctacacttagat 25795704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 207 - 250
Target Start/End: Original strand, 27975067 - 27975110
Alignment:
Q  207 cttatctttgtgctttgattatgcttgtggtgttgctctacact 250  Q
    ||||||||||| ||||  ||||||||||||||||||||||||||    
T  27975067 cttatctttgttctttatttatgcttgtggtgttgctctacact 27975110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 54460566 - 54460492
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacg-ttttcaacaatcgtgacacga 91  Q
    ||||||||||||||| | |||||||| |||||||||| | |||||||||||||| |||| |  |||||||||||||    
T  54460566 cacgttttaaccaatcttgaatgaac-tcatcctatgttccaaatcgtgacacgctttttagtaatcgtgacacga 54460492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 323
Target Start/End: Original strand, 3323752 - 3323790
Alignment:
Q  285 ttggatacactttatccattgattaccacttcctttgct 323  Q
    ||||| ||||||||| |||||||||||||||||||||||    
T  3323752 ttggagacactttatgcattgattaccacttcctttgct 3323790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #56
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 255
Target Start/End: Complemental strand, 8126663 - 8126625
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagat 255  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  8126663 tgctttgattatgagtgtggtgttgctctacacttagat 8126625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #57
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 17532527 - 17532565
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgct 55  Q
    ||||||||||||||| |||||||||||||||||| ||||    
T  17532527 cacgttttaaccaatatcgaatgaacctcatcctgtgct 17532565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #58
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 320
Target Start/End: Complemental strand, 27452868 - 27452822
Alignment:
Q  274 gttgttgttgcttggatacactttatccattgattaccacttccttt 320  Q
    |||||||||||||||| ||||||||  ||| ||||||||||||||||    
T  27452868 gttgttgttgcttggagacactttacacatagattaccacttccttt 27452822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #59
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 320
Target Start/End: Complemental strand, 32143232 - 32143186
Alignment:
Q  274 gttgttgttgcttggatacactttatccattgattaccacttccttt 320  Q
    |||||||||||||||| ||||||||  ||| ||||||||||||||||    
T  32143232 gttgttgttgcttggagacactttacacatagattaccacttccttt 32143186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #60
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 255
Target Start/End: Complemental strand, 37466253 - 37466215
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagat 255  Q
    ||||||||||||||||||  |||||||||||||||||||    
T  37466253 tgctttgattatgcttgtaatgttgctctacacttagat 37466215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #61
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 184
Target Start/End: Original strand, 54736794 - 54736828
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaat 184  Q
    ||||||||||| |||||||||||||||||||||||    
T  54736794 tgaactcaaaagtatcataaaaagactctaaaaat 54736828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #62
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 209
Target Start/End: Original strand, 23299504 - 23299556
Alignment:
Q  158 aaaatatcat-aaaaagactctaaaaatgtggaatgacagactgtcatcactt 209  Q
    |||||||||| |||||||||||||||||   ||||||| ||||||||||||||    
T  23299504 aaaatatcatgaaaaagactctaaaaatagtgaatgactgactgtcatcactt 23299556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #63
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 320
Target Start/End: Original strand, 27975129 - 27975173
Alignment:
Q  276 tgttgttgcttggatacactttatccattgattaccacttccttt 320  Q
    |||||||||||||| ||||||||  ||||||||| ||||||||||    
T  27975129 tgttgttgcttggagacactttacacattgattatcacttccttt 27975173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 45)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 207 - 323
Target Start/End: Complemental strand, 14520201 - 14520089
Alignment:
Q  207 cttatctttgtgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattga 306  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||         |||||||||||||||| ||||||||  ||||||    
T  14520201 cttatctttgtgctttgtttatgcttgtggtgttgctctacacttagatctaggtctg----tttttgttgttgttgcttggagacactttacacattga 14520106  T
Q  307 ttaccacttcctttgct 323  Q
    |||||||||||||||||    
T  14520105 ttaccacttcctttgct 14520089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 32837273 - 32837199
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacacga 91  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  32837273 cacgttttaaccaatgtcgaatgaaactcatcctatgctccaaatcgtgacacgttttcaacaatcatgacacga 32837199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 42061676 - 42061602
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacacga 91  Q
    |||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  42061676 cacgatttaaccaatgtcgaatgaacctcatcatgtgcttcaaatcgtgacacgttttcaacaatcgtgacacga 42061602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 21336531 - 21336605
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacacga 91  Q
    |||||||||||||||||||||||||||||||||| ||||  ||||||||||| ||||||||||| ||||||||||    
T  21336531 cacgttttaaccaatgtcgaatgaacctcatcctgtgctctaaatcgtgacatgttttcaacaaccgtgacacga 21336605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 37214956 - 37214882
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacacga 91  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||| |||| ||||    
T  37214956 cacgttttaaccaatgtcgaatgaacctcatcctgtgctccaaatcgtgacatgttttcaacaattgtgatacga 37214882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 207 - 264
Target Start/End: Original strand, 12084301 - 12084358
Alignment:
Q  207 cttatctttgtgctttgattatgcttgtggtgttgctctacacttagatctagatctg 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  12084301 cttatctttgtgctttgattatgcttgtggtgttgctctacacttagatctaggtctg 12084358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 22937999 - 22938056
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatcac 207  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  22937999 tgaactcaaaaatatcataaaaagactctaaaaacgtggaatgacagactgtcatcac 22938056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 150 - 207
Target Start/End: Complemental strand, 43490849 - 43490792
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatcac 207  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  43490849 tgaactcaaaaatatcataaaaagactctaaaaatgtgaaatgacagactgtcatcac 43490792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 43490982 - 43490909
Alignment:
Q  18 acgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacacga 91  Q
    ||||||||||||||| | ||||||||||||||| |||| | |||||||||||||||||||||||||||||||||    
T  43490982 acgttttaaccaatgccaaatgaacctcatcctgtgctcctaatcgtgacacgttttcaacaatcgtgacacga 43490909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 32837139 - 32837083
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  32837139 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacatactgtcatca 32837083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 37214822 - 37214766
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  37214822 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgttatca 37214766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 217 - 323
Target Start/End: Complemental strand, 19588708 - 19588606
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttc 316  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |||          |||||||||||||||| || ||||||| |||||||||||||||    
T  19588708 tgctttgattatgcttgtggtgttgctctacacttagatttaggtct----ttttttgttgttgttgcttggagacgctttatctattgattaccacttc 19588613  T
Q  317 ctttgct 323  Q
    |||||||    
T  19588612 ctttgct 19588606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 220 - 323
Target Start/End: Complemental strand, 28832218 - 28832120
Alignment:
Q  220 tttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttcctt 319  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||         |||||||||||||| | |||||||||||||||||||||||||||||    
T  28832218 tttgattatgcttgtggtgttgctctacacttagat-taggtctg----tttttgttgttgttgcttgaagacactttatccattgattaccacttcctt 28832124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 21827830 - 21827904
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacacga 91  Q
    |||||||||||||||||||||||||||||||||| || |  |||||||||||||| |||||||| ||||||||||    
T  21827830 cacgttttaaccaatgtcgaatgaacctcatcctgtgttctaaatcgtgacacgtattcaacaaccgtgacacga 21827904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 217 - 323
Target Start/End: Original strand, 24553641 - 24553743
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttc 316  Q
    |||||||||||||||||||||||| |||||||||||||| ||| ||||         |||| ||||||||||| ||||||||||||||||||| ||||||    
T  24553641 tgctttgattatgcttgtggtgtttctctacacttagatttaggtctg----tttttgttgatgttgcttggagacactttatccattgattatcacttc 24553736  T
Q  317 ctttgct 323  Q
    |||||||    
T  24553737 ctttgct 24553743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 39191521 - 39191447
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacacga 91  Q
    ||||||||||||||| |||||| ||||||||||| | ||| |||| |||||||||||||||||||||||||||||    
T  39191521 cacgttttaaccaatatcgaataaacctcatcctgtactttaaattgtgacacgttttcaacaatcgtgacacga 39191447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 28441991 - 28442063
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacac 89  Q
    ||||||||| ||||||| || ||||||||||||| ||||  ||||||||||||||||||||||||||||||||    
T  28441991 cacgttttagccaatgttgagtgaacctcatcctgtgctctaaatcgtgacacgttttcaacaatcgtgacac 28442063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 217 - 320
Target Start/End: Original strand, 17004095 - 17004193
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttc 316  Q
    ||||||||||||||||||||||||||| ||||||||||| ||| ||||         |||||||||||||||| |||||||||| |||||||||||||||    
T  17004095 tgctttgattatgcttgtggtgttgct-tacacttagatttaggtctg----tttttgttgttgttgcttggagacactttatctattgattaccacttc 17004189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 220 - 323
Target Start/End: Original strand, 42127548 - 42127646
Alignment:
Q  220 tttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttcctt 319  Q
    ||||||||||||||||||||||||||||| |||||| ||  ||||         |||||||||||||||| ||||||||||||||||||||||||| |||    
T  42127548 tttgattatgcttgtggtgttgctctacaattagatttaagtctg-----ttttgttgttgttgcttggagacactttatccattgattaccactttctt 42127642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 217 - 323
Target Start/End: Original strand, 11181967 - 11182071
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttc 316  Q
    ||||||||||||||||||||| ||||||||||||||||| ||  ||||         |||||||||||||||| |||||||||| ||||||||||||||     
T  11181967 tgctttgattatgcttgtggtattgctctacacttagatttaagtctg--tttttttgttgttgttgcttggagacactttatctattgattaccactta 11182064  T
Q  317 ctttgct 323  Q
    |||||||    
T  11182065 ctttgct 11182071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 22937865 - 22937939
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacacga 91  Q
    |||||||||| ||||||||||||||||||||| | |||| |||||||||| ||||||||||||| |||| |||||    
T  22937865 cacgttttaatcaatgtcgaatgaacctcatcttgtgctccaaatcgtgatacgttttcaacaaccgtggcacga 22937939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 31863062 - 31862988
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacacga 91  Q
    |||| ||||| ||||||||||||||| ||||| | ||||  ||||||||||||||||||||||||||||||||||    
T  31863062 cacgatttaaacaatgtcgaatgaacttcatcatgtgctctaaatcgtgacacgttttcaacaatcgtgacacga 31862988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 28788210 - 28788267
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgtttt 74  Q
    |||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||    
T  28788210 cacgttttaaccaatgtcgaataaacctcatcctatgttccaaatcgtgacacgtttt 28788267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 7270297 - 7270241
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 206  Q
    |||||||||||||||||||||||||||||||||||   |||||||||||||||||||    
T  7270297 tgaactcaaaaatatcataaaaagactctaaaaatagcgaatgacagactgtcatca 7270241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 18031766 - 18031708
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatcact 208  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||| |||| ||||||||    
T  18031766 tgaactcgaaaatatcataaaaagactctaaaaatatggaatgacggactatcatcact 18031708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 14376665 - 14376717
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacg 70  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  14376665 cacgttttaac-aatgtcgaatgaacctcatcctgtgcttcaaatcgtgacacg 14376717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 320
Target Start/End: Complemental strand, 3880262 - 3880166
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttc 316  Q
    ||||||||||||||||||||||||||| ||||||||||| ||| ||||          ||||||||| ||| | |||||||||| |||||||||||||||    
T  3880262 tgctttgattatgcttgtggtgttgctttacacttagatttaggtctg-------tttttgttgttgattgaagacactttatctattgattaccacttc 3880170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 187
Target Start/End: Complemental strand, 2836736 - 2836699
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtg 187  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2836736 tgaactcaaaaatatcataaaaagactctaaaaatgtg 2836699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 320
Target Start/End: Original strand, 36932475 - 36932583
Alignment:
Q  207 cttatctttgtgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattga 306  Q
    ||||||||||| ||||| ||||||||||||||||||||||||| |||| |||| ||||         |||||||||||||||| ||||||||  ||||||    
T  36932475 cttatctttgttctttgtttatgcttgtggtgttgctctacac-taga-ctaggtctg---ttttttgttgttgttgcttggagacactttacacattga 36932569  T
Q  307 ttaccacttccttt 320  Q
    ||||| ||||||||    
T  36932570 ttacctcttccttt 36932583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 207 - 323
Target Start/End: Original strand, 9353457 - 9353567
Alignment:
Q  207 cttatctttgtgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattga 306  Q
    ||||||||||| |||||  ||||||||||||||||||||||||| ||| |||| ||||         |||||||||||||||| ||||||||  |||||     
T  9353457 cttatctttgttctttgtatatgcttgtggtgttgctctacact-aga-ctaggtctg----tttttgttgttgttgcttggagacactttacacattgt 9353550  T
Q  307 ttaccacttcctttgct 323  Q
    |||||||||||||||||    
T  9353551 ttaccacttcctttgct 9353567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 274 - 320
Target Start/End: Complemental strand, 15464442 - 15464396
Alignment:
Q  274 gttgttgttgcttggatacactttatccattgattaccacttccttt 320  Q
    |||||||||||||||| ||||||||  ||||||||||||||||||||    
T  15464442 gttgttgttgcttggagacactttacacattgattaccacttccttt 15464396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 14016980 - 14017037
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatcac 207  Q
    ||||||||||| |||||||||||||||||||||||    |||||| ||||||||||||    
T  14016980 tgaactcaaaattatcataaaaagactctaaaaatagcaaatgactgactgtcatcac 14017037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 182
Target Start/End: Original strand, 4100381 - 4100413
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaa 182  Q
    |||||||||||||||||||||||||||||||||    
T  4100381 tgaactcaaaaatatcataaaaagactctaaaa 4100413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 17747673 - 17747617
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 206  Q
    ||||||||||| |||||||||||||||||||||||    |||||| |||||||||||    
T  17747673 tgaactcaaaattatcataaaaagactctaaaaatagcaaatgactgactgtcatca 17747617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 206
Target Start/End: Original strand, 21827985 - 21828041
Alignment:
Q  151 gaactcaaaaatatcataaaa-agactctaaaaatgtggaatgacagactgtcatca 206  Q
    ||||||||||||||||||||| |||||||||||||   ||||||| |||||||||||    
T  21827985 gaactcaaaaatatcataaaaaagactctaaaaatagcgaatgactgactgtcatca 21828041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 28788345 - 28788401
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 206  Q
    |||||| ||||||||||||||||||||||||||||    |||||| |||||||||||    
T  28788345 tgaactaaaaaatatcataaaaagactctaaaaatagcaaatgactgactgtcatca 28788401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 320
Target Start/End: Original strand, 31300734 - 31300829
Alignment:
Q  220 tttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttcctt 319  Q
    ||||||||  |||||||||||||||||||||||||| ||| ||||         |||||| ||||||| | |||||||||| ||||||||||| ||||||    
T  31300734 tttgattacacttgtggtgttgctctacacttagatttaggtctg-----ttttgttgtttttgcttgaaaacactttatctattgattaccagttcctt 31300828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 259
Target Start/End: Original strand, 11917115 - 11917149
Alignment:
Q  225 ttatgcttgtggtgttgctctacacttagatctag 259  Q
    |||||||||||||||||||||||||| ||||||||    
T  11917115 ttatgcttgtggtgttgctctacactaagatctag 11917149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 184
Target Start/End: Complemental strand, 30065618 - 30065584
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaat 184  Q
    |||| ||||||||||||||||||||||||||||||    
T  30065618 tgaattcaaaaatatcataaaaagactctaaaaat 30065584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 320
Target Start/End: Complemental strand, 38192082 - 38192036
Alignment:
Q  274 gttgttgttgcttggatacactttatccattgattaccacttccttt 320  Q
    |||||||||||||||| ||||||||  ||| ||||||||||||||||    
T  38192082 gttgttgttgcttggagacactttacacatagattaccacttccttt 38192036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 320
Target Start/End: Complemental strand, 38219307 - 38219261
Alignment:
Q  274 gttgttgttgcttggatacactttatccattgattaccacttccttt 320  Q
    |||||||||||||||| ||||||||  ||| ||||||||||||||||    
T  38219307 gttgttgttgcttggagacactttacacatagattaccacttccttt 38219261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 184
Target Start/End: Complemental strand, 39191387 - 39191353
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaat 184  Q
    ||||||||||| |||||||||||||||||||||||    
T  39191387 tgaactcaaaagtatcataaaaagactctaaaaat 39191353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 21336685 - 21336742
Alignment:
Q  150 tgaactcaaaaatatcataaaa-agactctaaaaatgtggaatgacagactgtcatca 206  Q
    ||||||||||||||| |||||| |||||||||||||   ||||||| |||||||||||    
T  21336685 tgaactcaaaaatataataaaaaagactctaaaaatagtgaatgactgactgtcatca 21336742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 206
Target Start/End: Complemental strand, 25329505 - 25329456
Alignment:
Q  157 aaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 206  Q
    |||||||||||||||| |||||||||||   ||||||| |||||||||||    
T  25329505 aaaaatatcataaaaaaactctaaaaatagcgaatgactgactgtcatca 25329456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 28563283 - 28563323
Alignment:
Q  167 taaaaagactctaaaaatgtggaatgacagactgtcatcac 207  Q
    |||||||||||||||||||||  ||||| ||||||||||||    
T  28563283 taaaaagactctaaaaatgtgatatgacggactgtcatcac 28563323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 291153 - 291081
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacac 89  Q
    |||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||    
T  291153 cacgttttaaccaatgtcgaatgaaccttatcctgtgctccaaatcgtgacacgttttcaacaatcgtgacac 291081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 150 - 208
Target Start/End: Original strand, 246294 - 246352
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatcact 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  246294 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagaccgtcatcact 246352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 61787 - 61713
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaatcgtgacacga 91  Q
    |||||||||||||||||||||||||||||||| | || ||||||||||||||||||||| |||||||||||||||    
T  61787 cacgttttaaccaatgtcgaatgaacctcatcttgtgtttcaaatcgtgacacgttttcgacaatcgtgacacga 61713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 207 - 323
Target Start/End: Complemental strand, 85656 - 85545
Alignment:
Q  207 cttatctttgtgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattga 306  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||          ||||||||||||||| ||||||||  ||||||    
T  85656 cttatctttgtgctttggttatgcttgtgatgttgctctacacttagatctaggtctg-----ttttattgttgttgcttggagacactttacacattga 85562  T
Q  307 ttaccacttcctttgct 323  Q
    |||||||||||||||||    
T  85561 ttaccacttcctttgct 85545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 197298 - 197242
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  197298 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 197242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 197417 - 197357
Alignment:
Q  21 ttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacgttttcaacaat 81  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  197417 ttttaatcaatgtcgaatgaacctcatcctgtgcttcaaatcgtgacacgttttcaacaat 197357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 217 - 323
Target Start/End: Complemental strand, 2454 - 2352
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttc 316  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||         |||||||||||||||| |||||||||| |||||| | ||||||    
T  2454 tgctttgattatgcttgtggtgttgttctacacttagatctaggtctg----tttttgttgttgttgcttggagacactttatctattgatcaacacttc 2359  T
Q  317 ctttgct 323  Q
    |||||||    
T  2358 ctttgct 2352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 264
Target Start/End: Complemental strand, 5645 - 5598
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctg 264  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||    
T  5645 tgctttgattatgcttgtggtgtttctctacacttagatctaggtctg 5598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1993 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold1993
Description:

Target: scaffold1993; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 1101 - 1045
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 206  Q
    ||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||    
T  1101 tgaactccaaaatatcataaaaagactctaaaaatgtgaaatgactgactgtcatca 1045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 207 - 323
Target Start/End: Original strand, 44086 - 44196
Alignment:
Q  207 cttatctttgtgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattga 306  Q
    ||||||||||| ||||| |||||||||||||||||||||||||| |||| ||| ||||         |||||||||||||||| ||||||||  ||||||    
T  44086 cttatctttgttctttgtttatgcttgtggtgttgctctacact-agat-taggtctg----tttttgttgttgttgcttggagacactttacacattga 44179  T
Q  307 ttaccacttcctttgct 323  Q
    |||||||||||||||||    
T  44180 ttaccacttcctttgct 44196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 207 - 323
Target Start/End: Original strand, 36958 - 37069
Alignment:
Q  207 cttatctttgtgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattga 306  Q
    ||||||||||||||||| |||| |||||||||||| |||||||  || ||||| ||||         |||||||||||||||| ||||||||  ||||||    
T  36958 cttatctttgtgctttgtttatacttgtggtgttggtctacaccaag-tctaggtctg----tttttgttgttgttgcttggagacactttacacattga 37052  T
Q  307 ttaccacttcctttgct 323  Q
    |||||||||||||||||    
T  37053 ttaccacttcctttgct 37069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0520 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 4824 - 4881
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatcac 207  Q
    |||||||||||||||||||||||||||||||||||   ||||||| ||||||||||||    
T  4824 tgaactcaaaaatatcataaaaagactctaaaaataacgaatgactgactgtcatcac 4881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0757 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0757
Description:

Target: scaffold0757; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 4619 - 4563
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 206  Q
    |||||||||||||||||||||||||||||||||||   ||||||| |||||||||||    
T  4619 tgaactcaaaaatatcataaaaagactctaaaaatagtgaatgactgactgtcatca 4563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: scaffold0270
Description:

Target: scaffold0270; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 4229 - 4304
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacg-ttttcaacaatcgtgacacga 91  Q
    |||||||||||||||||||||||||||| |||| ||  | |||||||||||||| ||||||  |||||||||||||    
T  4229 cacgttttaaccaatgtcgaatgaaccttatccaatattccaaatcgtgacacgcttttcagtaatcgtgacacga 4304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 11359 - 11434
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacacg-ttttcaacaatcgtgacacga 91  Q
    |||||||||||||||||||||||||||| |||| ||  | |||||||||||||| ||||||  |||||||||||||    
T  11359 cacgttttaaccaatgtcgaatgaaccttatccaatattccaaatcgtgacacgcttttcagtaatcgtgacacga 11434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 869 - 944
Alignment:
Q  17 cacgttttaaccaatgtcgaatgaacctcatcctatgcttcaaatcgtgacac-gttttcaacaatcgtgacacga 91  Q
    |||||||||||||||||||||||||||| |||| ||  | |||||||||||||  ||||||  |||||||||||||    
T  869 cacgttttaaccaatgtcgaatgaaccttatccaatattccaaatcgtgacacatttttcagtaatcgtgacacga 944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 1004 - 1061
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatcac 207  Q
    ||||||||||||||||||||||| ||||||||| |   ||||||| ||||||||||||    
T  1004 tgaactcaaaaatatcataaaaatactctaaaagtagcgaatgactgactgtcatcac 1061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 182
Target Start/End: Original strand, 4364 - 4396
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaa 182  Q
    |||||||||||||||||||||||||||||||||    
T  4364 tgaactcaaaaatatcataaaaagactctaaaa 4396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 182
Target Start/End: Original strand, 11494 - 11526
Alignment:
Q  150 tgaactcaaaaatatcataaaaagactctaaaa 182  Q
    |||||||||||||||||||||||||||||||||    
T  11494 tgaactcaaaaatatcataaaaagactctaaaa 11526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 264
Target Start/End: Complemental strand, 10691 - 10644
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctg 264  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  10691 tgctttgattatgcttgtggtgttgctctacacttagatttaggtctg 10644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1805 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1805
Description:

Target: scaffold1805; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 274 - 323
Target Start/End: Complemental strand, 1317 - 1268
Alignment:
Q  274 gttgttgttgcttggatacactttatccattgattaccacttcctttgct 323  Q
    |||||||||||||||| ||||||||  |||||||||||||||||||||||    
T  1317 gttgttgttgcttggagacactttacacattgattaccacttcctttgct 1268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 6497 - 6555
Alignment:
Q  150 tgaactcaaaaatatcataaaa-agactctaaaaatgtggaatgacagactgtcatcac 207  Q
    |||||||||||||||||||||| |||||||||||||   ||||||| ||||||||||||    
T  6497 tgaactcaaaaatatcataaaaaagactctaaaaatagcgaatgactgactgtcatcac 6555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 323
Target Start/End: Complemental strand, 17225 - 17126
Alignment:
Q  217 tgctttgattatgcttgtggtgttgctctacacttagatctagatctggnnnnnnnngttgttgttgcttggatacactttatccattgattaccacttc 316  Q
    |||||| ||||||||||||||||||||||| |||||||| ||| | ||          ||||||||| ||||| ||| |||||| |||||||||||||||    
T  17225 tgctttaattatgcttgtggtgttgctctatacttagatttaggtatgttt-------ttgttgttgtttggagacattttatctattgattaccacttc 17133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 274 - 323
Target Start/End: Complemental strand, 45164 - 45115
Alignment:
Q  274 gttgttgttgcttggatacactttatccattgattaccacttcctttgct 323  Q
    |||||||||||||||| ||||||||  |||||||||||||||| ||||||    
T  45164 gttgttgttgcttggagacactttacacattgattaccacttcatttgct 45115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 320
Target Start/End: Original strand, 18139 - 18185
Alignment:
Q  274 gttgttgttgcttggatacactttatccattgattaccacttccttt 320  Q
    |||||||||||||||| ||||||||  ||| ||||||||||||||||    
T  18139 gttgttgttgcttggagacactttacacatagattaccacttccttt 18185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 320
Target Start/End: Original strand, 24232 - 24278
Alignment:
Q  274 gttgttgttgcttggatacactttatccattgattaccacttccttt 320  Q
    |||||||||||||||| ||||||||  ||| ||||||||||||||||    
T  24232 gttgttgttgcttggagacactttacacatagattaccacttccttt 24278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 320
Target Start/End: Original strand, 8607 - 8653
Alignment:
Q  274 gttgttgttgcttggatacactttatccattgattaccacttccttt 320  Q
    |||||| ||||||||| ||||||||  ||||||||||||||||||||    
T  8607 gttgttattgcttggagacactttacacattgattaccacttccttt 8653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 249
Target Start/End: Original strand, 29608 - 29649
Alignment:
Q  208 ttatctttgtgctttgattatgcttgtggtgttgctctacac 249  Q
    |||||||  ||||||||||||||||||||||||||| |||||    
T  29608 ttatcttgttgctttgattatgcttgtggtgttgctttacac 29649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 249
Target Start/End: Complemental strand, 43236 - 43195
Alignment:
Q  208 ttatctttgtgctttgattatgcttgtggtgttgctctacac 249  Q
    |||||||  ||||||||||||||||||||||||||| |||||    
T  43236 ttatcttgttgctttgattatgcttgtggtgttgctttacac 43195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University