View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13307_low_1 (Length: 701)
Name: NF13307_low_1
Description: NF13307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13307_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 243 - 684
Target Start/End: Complemental strand, 17219516 - 17219054
Alignment:
| Q |
243 |
acttcaacactaagggatctgtttcaatgtacacagaaacctctaagaacaaatgttaaaccaatagtcaatcgactattggttgtagcttagtttacgc |
342 |
Q |
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| T |
17219516 |
acttcaacactaagggatctgtttcaatgtacacagacacctctaagaataaatgttaaaccaatagtcaatcgactattggttgtagcttagtttacgc |
17219417 |
T |
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| Q |
343 |
tttaaatttaaattttaacgaaaatattgctcaattgaaaaccttcctggatgcaaagggatatgcacacatttaagatgtgactatagtgaaaaccttc |
442 |
Q |
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| T |
17219416 |
tttaaatttaaattttaacgaaaatattgctcaattgaaaaccttcctggatgcaaagggatatgcacacatttaagatgtgactatagtgaaaaccttc |
17219317 |
T |
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| Q |
443 |
cttgttttacatagttacttacagaagtaatcaactatggagaaattaca---------------------atcaagaatattttccaatcaaataagtc |
521 |
Q |
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| T |
17219316 |
cttgttttacatagtgaattacagaagtaatcaactatggagaaattacataagtttgttctcagaatacgatcaagaatattttccaatcaaataagtc |
17219217 |
T |
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| Q |
522 |
atttatggctaaaagcagttgggtaagaatttgttcagttggtaaatgtttatttacagaatcttaaagttatgatggaaaaggagcaatagtggttaaa |
621 |
Q |
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| T |
17219216 |
atttatggctaaaagcagttggctaagaatttgttcagttagtaaatatttatatacagaatcttaaagttatgatggaaaaggagcaatagtggttaaa |
17219117 |
T |
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| Q |
622 |
tttatgtcttaaaacattgtgaatgtgagctgcactttatattcattgtttatgcaaacaaat |
684 |
Q |
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| T |
17219116 |
tttatgttttaaaacattgtgaatgtgagctgcactttatattcattgtttatgcaaacaaat |
17219054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 581 - 680
Target Start/End: Complemental strand, 17205962 - 17205863
Alignment:
| Q |
581 |
aatcttaaagttatgatggaaaaggagcaatagtggttaaatttatgtcttaaaacattgtgaatgtgagctgcactttatattcattgtttatgcaaac |
680 |
Q |
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| T |
17205962 |
aatcttagagttcttatggaaaaggagcaagagtggttatattactgtttaaaaacattctgaatgaaagctacactttttattgattgtttatgcaaac |
17205863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 17206983 - 17206925
Alignment:
| Q |
18 |
acatcttcacgtagcatacttacgtttaaactttcaacagttgagccaacaaactccat |
76 |
Q |
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| T |
17206983 |
acatcttcacttatcatacttacgtttaggctttcaacagttgagccaacgaactccat |
17206925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 302 - 430
Target Start/End: Complemental strand, 17206318 - 17206191
Alignment:
| Q |
302 |
accaatagtcaatcgactattggttgtagcttagtttacgctttaaatttaaattttaacgaaaatattgctcaattgaaaaccttcctggatgcaaagg |
401 |
Q |
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| T |
17206318 |
accaatagtccaatgactactggttgtagctaagtttccactttaaaattaaatcataatgaaccttttgcaccattgaaaaccttcctagttgcaaa-g |
17206220 |
T |
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| Q |
402 |
gatatgcacacatttaagatgtgactata |
430 |
Q |
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| T |
17206219 |
gttatgcataaatttaagatgtaactata |
17206191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 71 - 136
Target Start/End: Complemental strand, 17206752 - 17206686
Alignment:
| Q |
71 |
ctccatccattaaaaatcttatagttggaggcacctgcatt-atattgaatatagcataaataaaaa |
136 |
Q |
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| T |
17206752 |
ctccatccattacaaatctcaaagttggaggcacctgcattaatatgggatataagataaataaaaa |
17206686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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