View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13307_low_10 (Length: 390)
Name: NF13307_low_10
Description: NF13307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13307_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 50410118 - 50410496
Alignment:
| Q |
1 |
tctaggtttttccgttttgctgaagatggagatgagtttgaggataaaccaatggaggataattcttctttacatcatgctcttaaggaatcaattccaa |
100 |
Q |
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| T |
50410118 |
tctaggtttttccgttttgctgaagatggagatgagtttgaggataaaccaatggaggataattcttctttacatcatgctcttaaggaatcaattccaa |
50410217 |
T |
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| Q |
101 |
ccatatggagagttaaatgcactgtatgtcacctgaaatgcgactttgtcattttgttaaccatagtttctagcattgcatttataannnnnnnggggct |
200 |
Q |
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| T |
50410218 |
ccatatggagagttaaatgcactgtatg-cacctgaaaagcgactttgtcattttgttaaccatagtttctagcattgcatttataatttttttggggct |
50410316 |
T |
|
| Q |
201 |
tctataccatgaagcacatacacagtcacggacacactgacacatcgacattggtaataatttaagaaaacta---aagtatcggtgttgtgttagtgtc |
297 |
Q |
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| T |
50410317 |
tctataccatgaagcacatacacagtcacggacacactgacacattgacactggtaataatttaagaaaactacataagtgtcggtgttgtgttagtgtc |
50410416 |
T |
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| Q |
298 |
agtcggatacaccttcgatcagaagtttcggtgcttcgggtcttctatattcctttgttaagctttgtttgccacaggtt |
377 |
Q |
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| T |
50410417 |
ggtcggatacaccttcgatcagaagtttcggtgcttcgggtcttctatattcctttgttaagctttgtttgccacaggtt |
50410496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 18750863 - 18750899
Alignment:
| Q |
234 |
acactgacacatcgacattggtaataatttaagaaaa |
270 |
Q |
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| T |
18750863 |
acactgacacatcgacaacggtaataatttaagaaaa |
18750899 |
T |
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