View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13307_low_17 (Length: 263)
Name: NF13307_low_17
Description: NF13307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13307_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 45829514 - 45829743
Alignment:
| Q |
19 |
aaagactcctaacacaccactgctaatttcggaatcattcaatctgttggtttatacgacacgctccgtcgcggctaggagaggtgggatgatttcttct |
118 |
Q |
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| T |
45829514 |
aaagactcctaacacaccactgctaatatcggaatcattcaatcctttggtttatatgacacgctccgtcgcggctaggagagctgggatgatttcttct |
45829613 |
T |
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| Q |
119 |
ccttttcactgctatgtgtaagttttttctccttctccttctccttctccttggtatattttttccctcatctttaaatccagatttgtgtaagtttttc |
218 |
Q |
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| T |
45829614 |
ccttttcactcccatgtgtaagttttttctccttctccttct-----tcgttggtatattttttccctcatctttaaatccagatttgtgtaagtttttc |
45829708 |
T |
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| Q |
219 |
accttcaatttcttccctttttatgtgtatgatga |
253 |
Q |
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| T |
45829709 |
accttcaatatcttccccttttatgtgtttgatga |
45829743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 113
Target Start/End: Complemental strand, 13096128 - 13096087
Alignment:
| Q |
72 |
atacgacacgctccgtcgcggctaggagaggtgggatgattt |
113 |
Q |
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| T |
13096128 |
atacgacacgctccgtcgcggctagtagcggtgggctgattt |
13096087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 121 - 253
Target Start/End: Complemental strand, 22141450 - 22141323
Alignment:
| Q |
121 |
ttttcactgctatgtgtaagttttttctccttctccttctccttctccttggtatattttttccctcatctttaaatccagatttgtgtaagtttttcac |
220 |
Q |
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| T |
22141450 |
ttttcactgctatgtgtaagttttttctcatcctccttctccgt-----tggtatattttttccatcatctttaaatccagatttgtttaagtttttcac |
22141356 |
T |
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| Q |
221 |
cttcaatttcttccctttttatgtgtatgatga |
253 |
Q |
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| T |
22141355 |
cttcactttcatccccttttatgtgtttgatga |
22141323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 66 - 124
Target Start/End: Complemental strand, 22141820 - 22141762
Alignment:
| Q |
66 |
tggtttatacgacacgctccgtcgcggctaggagaggtgggatgatttcttctcctttt |
124 |
Q |
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| T |
22141820 |
tggtttatacgacacgcaccgtcgcggctaggagaggtgggctgatttcttctcctttt |
22141762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 113
Target Start/End: Complemental strand, 43045846 - 43045793
Alignment:
| Q |
60 |
atctgttggtttatacgacacgctccgtcgcggctaggagaggtgggatgattt |
113 |
Q |
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| T |
43045846 |
atctgttggtttctacgacacgctccgttgcggttaggaacggtgggctgattt |
43045793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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