View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13307_low_2 (Length: 647)
Name: NF13307_low_2
Description: NF13307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13307_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 369 - 599
Target Start/End: Complemental strand, 28975788 - 28975558
Alignment:
| Q |
369 |
ttagatttttctatttgtaacacgactagtgtatgaactaaaattaactagcacacaataaatattatttcccatttggattattacatgatgaaattgt |
468 |
Q |
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| T |
28975788 |
ttagatttttctgtttgtaacacggctagtgtatgaactaaaattaactagcacacaataaatattatttcccatttggattattacatgatgaaattgt |
28975689 |
T |
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| Q |
469 |
tgacgaatcgggaaagaaagtaaataacttaaggtggattgaatgattaagagagaaagaggaaaagagagattgagctcaactgagtgtttcgaatctg |
568 |
Q |
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| T |
28975688 |
tgacgaatcgggaaagaaagtaaataacttaaggtggactgaatgattaagagagaaagaggaaaagagagattgagctcaactgagtgtttcaaatctg |
28975589 |
T |
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| Q |
569 |
aagcttggtttggatgagaatggaagttaca |
599 |
Q |
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| T |
28975588 |
aagcttggtttggatgagaatggaagttaca |
28975558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 22 - 301
Target Start/End: Complemental strand, 28976138 - 28975855
Alignment:
| Q |
22 |
gatcccaactctcctccatactcttctcattcttctcaatttctttgtgtactagggacaaccccctctctctctaannnnnnnn----ctccctaattg |
117 |
Q |
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| T |
28976138 |
gatcccaactctcctccatactcttctcattcttctgaatttctttatgtactagggacaaccccctctctctctctctctaattttttctcactaattg |
28976039 |
T |
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| Q |
118 |
agaaacttgtaatgatgggtttgagataggttttgtgaattcaattcatatttgtttggtttgttcttgttgtggtgttgaaccaccgttatgttcacca |
217 |
Q |
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| T |
28976038 |
agaaacttgtaatgatgggtttgagatagattttgtgaattcaattcatacttgtttgggttgttcttgttgtggtgttgaaccaccgttatgttcacca |
28975939 |
T |
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| Q |
218 |
tgtttgttggaatttttaaagaacaaagaaagaatcagaaagtaagaatagaaaacaaaattagattttccggtgagccattag |
301 |
Q |
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| T |
28975938 |
tgtttgttggaatttgtaaagaacaaagatagaatcagaaagtaagaataaaaaacaaaattagatttttcggtgagccattag |
28975855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 44631408 - 44631346
Alignment:
| Q |
209 |
tgttcaccatgtttgttggaatttttaaagaacaaagaaagaatcagaaagtaagaatagaaa |
271 |
Q |
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| T |
44631408 |
tgttcaccatgtttattggaattttcaaagaacaaagaaagaatgagaaagtaagaatagaaa |
44631346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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