View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13307_low_20 (Length: 239)

Name: NF13307_low_20
Description: NF13307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13307_low_20
NF13307_low_20
[»] chr5 (2 HSPs)
chr5 (24-178)||(13990466-13990620)
chr5 (175-220)||(13990899-13990944)
[»] chr4 (1 HSPs)
chr4 (175-215)||(38940650-38940690)
[»] chr7 (2 HSPs)
chr7 (175-216)||(5468078-5468119)
chr7 (175-215)||(32676398-32676438)
[»] chr2 (3 HSPs)
chr2 (170-215)||(9740327-9740373)
chr2 (175-205)||(33228199-33228229)
chr2 (175-216)||(38799395-38799436)


Alignment Details
Target: chr5 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 24 - 178
Target Start/End: Original strand, 13990466 - 13990620
Alignment:
Q  24 gcaagaagggacatttttcacagggctcaacttttttatcctaaatatcttgcatgcatgtatgtcaaatttcaattttatttatagattttaaaatttg 123  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  13990466 gcaagaagggacatttttcacacggctcaacttttttatcctaaatatcttgcatgcatgtaagtcaaatttcaattttatttatagattttaaaatttg 13990565  T
Q  124 tctcttaacaataatatataaaagattttgggttgactttttcattctcttaata 178  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13990566 tctcttaacaataatatataaaagattttgggttgacattttcattctcttaata 13990620  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 13990899 - 13990944
Alignment:
Q  175 aataaatttgtctataaaaatgttatattattgatgtcattgctat 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  13990899 aataaatttgtctataaaaatgttatattattgatgtcattgctat 13990944  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 38940690 - 38940650
Alignment:
Q  175 aataaatttgtctataaaaatgttatattattgatgtcatt 215  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  38940690 aataaatttgtctataaaaatgttatattattgatgtcatt 38940650  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 5468078 - 5468119
Alignment:
Q  175 aataaatttgtctataaaaatgttatattattgatgtcattg 216  Q
    ||||||||| ||||||| ||||||||||||||||||||||||    
T  5468078 aataaatttttctataataatgttatattattgatgtcattg 5468119  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 32676398 - 32676438
Alignment:
Q  175 aataaatttgtctataaaaatgttatattattgatgtcatt 215  Q
    |||||| |||||| ||| |||||||||||||||||||||||    
T  32676398 aataaagttgtctctaagaatgttatattattgatgtcatt 32676438  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 215
Target Start/End: Complemental strand, 9740373 - 9740327
Alignment:
Q  170 ctcttaat-aaatttgtctataaaaatgttatattattgatgtcatt 215  Q
    |||||||| ||||||||||||||||||||| |||| |||||||||||    
T  9740373 ctcttaatcaaatttgtctataaaaatgttgtattcttgatgtcatt 9740327  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 205
Target Start/End: Original strand, 33228199 - 33228229
Alignment:
Q  175 aataaatttgtctataaaaatgttatattat 205  Q
    |||||||||||||||||||||||||||||||    
T  33228199 aataaatttgtctataaaaatgttatattat 33228229  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 38799395 - 38799436
Alignment:
Q  175 aataaatttgtctataaaaatgttatattattgatgtcattg 216  Q
    |||||||||||||||||||||||| |||||||  ||||||||    
T  38799395 aataaatttgtctataaaaatgttttattattagtgtcattg 38799436  T

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