View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13307_low_21 (Length: 227)

Name: NF13307_low_21
Description: NF13307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13307_low_21
NF13307_low_21
[»] chr7 (6 HSPs)
chr7 (1-225)||(26975211-26975429)
chr7 (63-113)||(40561719-40561769)
chr7 (63-115)||(27571936-27571988)
chr7 (9-49)||(36797169-36797209)
chr7 (63-115)||(40491652-40491704)
chr7 (63-115)||(45557439-45557491)
[»] chr1 (8 HSPs)
chr1 (63-115)||(34915140-34915192)
chr1 (63-113)||(48548975-48549025)
chr1 (64-113)||(44786879-44786928)
chr1 (63-115)||(35961442-35961494)
chr1 (63-98)||(24697574-24697609)
chr1 (63-115)||(441594-441646)
chr1 (63-115)||(5268293-5268345)
chr1 (79-115)||(29759709-29759745)
[»] chr8 (2 HSPs)
chr8 (64-115)||(16972023-16972074)
chr8 (63-115)||(18123300-18123352)
[»] chr6 (7 HSPs)
chr6 (63-113)||(32888918-32888968)
chr6 (63-113)||(34620960-34621010)
chr6 (63-113)||(34748397-34748447)
chr6 (63-112)||(1499974-1500023)
chr6 (63-113)||(882760-882810)
chr6 (65-115)||(25208702-25208752)
chr6 (8-60)||(13687258-13687310)
[»] chr5 (4 HSPs)
chr5 (63-115)||(117455-117507)
chr5 (81-115)||(24036623-24036657)
chr5 (64-110)||(34443050-34443096)
chr5 (68-113)||(4306591-4306636)
[»] chr2 (3 HSPs)
chr2 (63-115)||(44439328-44439380)
chr2 (63-115)||(15220820-15220872)
chr2 (63-115)||(16518852-16518904)
[»] chr4 (1 HSPs)
chr4 (67-115)||(22683942-22683990)
[»] chr3 (1 HSPs)
chr3 (81-113)||(47278799-47278831)


Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 26975429 - 26975211
Alignment:
Q  1 ttaaattgaagttatgatttgtagtttttatctctaaatctgatttttacattaaaatttgtctcacttttacataaacgtattcaaacataaatcattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26975429 ttaaattgaagttatgatttgtagtttttatctctaaatctgatttttacattaaaatttgtctcacttttacataaacgtattcaaacataaatcattt 26975330  T
Q  101 tacgttcaactcactacttataactaaaatcagcttttgcaggtcacacccaaacattttttcgaaatcaagtttgagtgtgtgtaacttatactatgta 200  Q
    ||| ||||||||   |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||   ||||||    
T  26975329 tacattcaactc---acttataactaaaatcagctttcgcagatcacacccaaacattttttcgaaatcaagtttgagtgtgtgtaactta---tatgta 26975236  T
Q  201 tcaaactaagatttctagtattttt 225  Q
    |||||||||||||||||||||||||    
T  26975235 tcaaactaagatttctagtattttt 26975211  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 113
Target Start/End: Complemental strand, 40561769 - 40561719
Alignment:
Q  63 ctcacttttacataaacgtattcaaacataaatcattttacgttcaactca 113  Q
    ||||||||||||| || |||| ||||||||||||| ||||| |||||||||    
T  40561769 ctcacttttacatgaatgtatccaaacataaatcactttactttcaactca 40561719  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 115
Target Start/End: Original strand, 27571936 - 27571988
Alignment:
Q  63 ctcacttttacataaacgtattcaaacataaatcattttacgttcaactcact 115  Q
    ||||| |||||||||| |||| ||| ||||||||||||||| || ||||||||    
T  27571936 ctcacatttacataaatgtatccaaccataaatcattttacctttaactcact 27571988  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 36797209 - 36797169
Alignment:
Q  9 aagttatgatttgtagtttttatctctaaatctgattttta 49  Q
    ||||||| |||||||||||||||||| |||| |||||||||    
T  36797209 aagttataatttgtagtttttatctcaaaatgtgattttta 36797169  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 115
Target Start/End: Original strand, 40491652 - 40491704
Alignment:
Q  63 ctcacttttacataaacgtattcaaacataaatcattttacgttcaactcact 115  Q
    ||||||||||||| || |||| |||| |||||||| ||||| |||||||||||    
T  40491652 ctcacttttacatgaatgtatccaaaaataaatcactttaccttcaactcact 40491704  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 115
Target Start/End: Original strand, 45557439 - 45557491
Alignment:
Q  63 ctcacttttacataaacgtattcaaacataaatcattttacgttcaactcact 115  Q
    ||||||||||||| || |||| |||||| |||||| ||||| |||||||||||    
T  45557439 ctcacttttacatgaatgtatccaaacacaaatcactttaccttcaactcact 45557491  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 115
Target Start/End: Original strand, 34915140 - 34915192
Alignment:
Q  63 ctcacttttacataaacgtattcaaacataaatcattttacgttcaactcact 115  Q
    ||||||||||||| || |||||||||||||||||||||||| | |||||||||    
T  34915140 ctcacttttacatgaatgtattcaaacataaatcattttacctgcaactcact 34915192  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 63 - 113
Target Start/End: Complemental strand, 48549025 - 48548975
Alignment:
Q  63 ctcacttttacataaacgtattcaaacataaatcattttacgttcaactca 113  Q
    |||||||||||||||| ||||  |||||||||||||||||| |||||||||    
T  48549025 ctcacttttacataaatgtatcaaaacataaatcattttaccttcaactca 48548975  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 113
Target Start/End: Complemental strand, 44786928 - 44786879
Alignment:
Q  64 tcacttttacataaacgtattcaaacataaatcattttacgttcaactca 113  Q
    |||||||||||| || |||||| ||||||||||||||||| |||||||||    
T  44786928 tcacttttacatgaatgtattcgaacataaatcattttacattcaactca 44786879  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 115
Target Start/End: Original strand, 35961442 - 35961494
Alignment:
Q  63 ctcacttttacataaacgtattcaaacataaatcattttacgttcaactcact 115  Q
    ||||||||||||| || ||||  |||||||||||||||||| |||||||||||    
T  35961442 ctcacttttacatgaatgtatagaaacataaatcattttaccttcaactcact 35961494  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 98
Target Start/End: Complemental strand, 24697609 - 24697574
Alignment:
Q  63 ctcacttttacataaacgtattcaaacataaatcat 98  Q
    ||||||||||||||||||||| ||||||||||||||    
T  24697609 ctcacttttacataaacgtatccaaacataaatcat 24697574  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 441646 - 441594
Alignment:
Q  63 ctcacttttacataaacgtattcaaacataaatcattttacgttcaactcact 115  Q
    |||| ||||| ||||| ||||||||||||||||||||| || ||||| |||||    
T  441646 ctcatttttatataaatgtattcaaacataaatcatttcacattcaaatcact 441594  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 115
Target Start/End: Original strand, 5268293 - 5268345
Alignment:
Q  63 ctcacttttacataaacgtattcaaacataaatcattttacgttcaactcact 115  Q
    ||||||||||||| ||  |||||||||| |||||| ||||| |||||||||||    
T  5268293 ctcacttttacatgaatatattcaaacaaaaatcactttacattcaactcact 5268345  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 115
Target Start/End: Original strand, 29759709 - 29759745
Alignment:
Q  79 cgtattcaaacataaatcattttacgttcaactcact 115  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  29759709 cgtatccaaacataaatcattttacattcaactcact 29759745  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 16972074 - 16972023
Alignment:
Q  64 tcacttttacataaacgtattcaaacataaatcattttacgttcaactcact 115  Q
    |||||||||||| || ||||||||||| |||||||||||| |||||||||||    
T  16972074 tcacttttacatgaatgtattcaaacacaaatcattttaccttcaactcact 16972023  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 115
Target Start/End: Original strand, 18123300 - 18123352
Alignment:
Q  63 ctcacttttacataaacgtattcaaacataaatcattttacgttcaactcact 115  Q
    ||||||||||||||||  ||||| |||| |||||||||||| ||||| |||||    
T  18123300 ctcacttttacataaatatattccaacacaaatcattttaccttcaattcact 18123352  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 63 - 113
Target Start/End: Complemental strand, 32888968 - 32888918
Alignment:
Q  63 ctcacttttacataaacgtattcaaacataaatcattttacgttcaactca 113  Q
    ||||||||||||||||  ||||||||||||||||||||||  |||||||||    
T  32888968 ctcacttttacataaatatattcaaacataaatcattttatcttcaactca 32888918  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 63 - 113
Target Start/End: Original strand, 34620960 - 34621010
Alignment:
Q  63 ctcacttttacataaacgtattcaaacataaatcattttacgttcaactca 113  Q
    |||||||||||||||| |||| ||||||||||||| ||||| |||||||||    
T  34620960 ctcacttttacataaatgtatccaaacataaatcactttaccttcaactca 34621010  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 63 - 113
Target Start/End: Original strand, 34748397 - 34748447
Alignment:
Q  63 ctcacttttacataaacgtattcaaacataaatcattttacgttcaactca 113  Q
    |||||||||||||||| |||| ||||||||||||| ||||| |||||||||    
T  34748397 ctcacttttacataaatgtatccaaacataaatcactttaccttcaactca 34748447  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 112
Target Start/End: Original strand, 1499974 - 1500023
Alignment:
Q  63 ctcacttttacataaacgtattcaaacataaatcattttacgttcaactc 112  Q
    |||||||||||||||| |||||||||||||||||| |||||  |||||||    
T  1499974 ctcacttttacataaatgtattcaaacataaatcaatttacactcaactc 1500023  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 113
Target Start/End: Original strand, 882760 - 882810
Alignment:
Q  63 ctcacttttacataaacgtattcaaacataaatcattttacgttcaactca 113  Q
    ||||||||| ||| || |||| ||||||||||||||||||| |||||||||    
T  882760 ctcacttttgcatgaatgtatccaaacataaatcattttaccttcaactca 882810  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 115
Target Start/End: Original strand, 25208702 - 25208752
Alignment:
Q  65 cacttttacataaacgtattcaaacataaatcattttacgttcaactcact 115  Q
    ||||||||||||||  |||  |||||||||||||||||| |||||||||||    
T  25208702 cacttttacataaatctatcgaaacataaatcattttacattcaactcact 25208752  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 13687258 - 13687310
Alignment:
Q  8 gaagttatgatttgtagtttttatctctaaatctgatttttacattaaaattt 60  Q
    ||||||| || ||| ||||||| ||||||||| ||||||||||||| ||||||    
T  13687258 gaagttaagacttgaagtttttgtctctaaatatgatttttacattcaaattt 13687310  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 117507 - 117455
Alignment:
Q  63 ctcacttttacataaacgtattcaaacataaatcattttacgttcaactcact 115  Q
    |||||||||||||| | |||| ||||||| ||||||||||| |||||||||||    
T  117507 ctcacttttacatagatgtatccaaacatgaatcattttaccttcaactcact 117455  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 115
Target Start/End: Original strand, 24036623 - 24036657
Alignment:
Q  81 tattcaaacataaatcattttacgttcaactcact 115  Q
    ||||||||||||||||||||||| |||||||||||    
T  24036623 tattcaaacataaatcattttacattcaactcact 24036657  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 110
Target Start/End: Original strand, 34443050 - 34443096
Alignment:
Q  64 tcacttttacataaacgtattcaaacataaatcattttacgttcaac 110  Q
    ||||||||| ||||| |||||||||||||||| ||||||| ||||||    
T  34443050 tcacttttatataaatgtattcaaacataaattattttactttcaac 34443096  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 4306591 - 4306636
Alignment:
Q  68 ttttacataaacgtattcaaacataaatcattttacgttcaactca 113  Q
    |||||||| || |||| ||||||||||||||||||| |||||||||    
T  4306591 ttttacatgaatgtatccaaacataaatcattttacattcaactca 4306636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 115
Target Start/End: Original strand, 44439328 - 44439380
Alignment:
Q  63 ctcacttttacataaacgtattcaaacataaatcattttacgttcaactcact 115  Q
    ||||||||||||||||| ||| ||||||||||||| ||||| || ||||||||    
T  44439328 ctcacttttacataaacatatccaaacataaatcactttacatttaactcact 44439380  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 15220872 - 15220820
Alignment:
Q  63 ctcacttttacataaacgtattcaaacataaatcattttacgttcaactcact 115  Q
    |||||||| |||| || |||| ||||||||||||| ||||| |||||||||||    
T  15220872 ctcactttaacatgaatgtatccaaacataaatcactttacattcaactcact 15220820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 115
Target Start/End: Original strand, 16518852 - 16518904
Alignment:
Q  63 ctcacttttacataaacgtattcaaacataaatcattttacgttcaactcact 115  Q
    ||||||||||||| || |||| |||||| ||||||||||||  ||||||||||    
T  16518852 ctcacttttacatgaatgtatccaaacacaaatcattttaccctcaactcact 16518904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 22683942 - 22683990
Alignment:
Q  67 cttttacataaacgtattcaaacataaatcattttacgttcaactcact 115  Q
    |||||||||||| || | |||||||||| |||||||| |||||||||||    
T  22683942 cttttacataaatgtgtccaaacataaaccattttactttcaactcact 22683990  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 113
Target Start/End: Original strand, 47278799 - 47278831
Alignment:
Q  81 tattcaaacataaatcattttacgttcaactca 113  Q
    ||||||||||||||||||||||| |||||||||    
T  47278799 tattcaaacataaatcattttacattcaactca 47278831  T

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