View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13307_low_23 (Length: 226)
Name: NF13307_low_23
Description: NF13307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13307_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 27246520 - 27246311
Alignment:
| Q |
1 |
ggacaccaactgtaataattattattacgatggtagaaggagaagaaggaacggtaaccaccagggaaagtggagatgacgttgttagctatgggatcca |
100 |
Q |
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| T |
27246520 |
ggacaccaactgtaataattattattacgatggtagaaggagaagaaggaatggtaaccaccagggaaagtggagatgacgttgttagctatgggatcca |
27246421 |
T |
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| Q |
101 |
atagcaaagaaggccatgttgaggtgcatatgttccgccataaatctttgtcgttgcagatcatgtggcggagttctgaagatacggaggagaaggcggt |
200 |
Q |
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| T |
27246420 |
atagcaaagaaggccatgttgaggtgcatatgttccgccataaatctttgtcgttgcagatcatgtggcggagttctgaagatacggaggagaaggcggt |
27246321 |
T |
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| Q |
201 |
taaggttgtt |
210 |
Q |
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|||||||||| |
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| T |
27246320 |
taaggttgtt |
27246311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 12 - 185
Target Start/End: Complemental strand, 27253289 - 27253116
Alignment:
| Q |
12 |
gtaataattattattacgatggtagaaggagaagaaggaacggtaaccaccagggaaagtggagatgacgttgttagctatgggatccaatagcaaagaa |
111 |
Q |
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| T |
27253289 |
gtaagaattattattgtgatggttgaaggagaagaaggaacggtaaccaccgggaaaagtggagatgacgttgttagctatgggatccaatagcaaagaa |
27253190 |
T |
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| Q |
112 |
ggccatgttgaggtgcatatgttccgccataaatctttgtcgttgcagatcatgtggcggagttctgaagatac |
185 |
Q |
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| T |
27253189 |
ggccatgttgaagtgcatatgttccgccatagatcttcgttgttgcagatcatgtggcggagttctgaagatac |
27253116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 40 - 209
Target Start/End: Complemental strand, 27257554 - 27257382
Alignment:
| Q |
40 |
gagaagaaggaacggtaaccaccagggaaagtggagatgacgttgttagctatgggatccaatagcaaagaaggccatgttgaggtgcatatgttccgcc |
139 |
Q |
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| T |
27257554 |
gagaagaaggaacggtaacctccagggaaagtagagataacgttgtgaacgataggatccaacagcaaagaaggccacgttgaggtgcatatgttccgcc |
27257455 |
T |
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| Q |
140 |
ataaatctttgtcgttg---cagatcatgtggcggagttctgaagatacggaggagaaggcggttaaggttgt |
209 |
Q |
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| T |
27257454 |
atagatcttcgttgctgtggcaaatcatgtgacgaagttctgaacacacagaggataagacggttaaggttgt |
27257382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 39 - 209
Target Start/End: Complemental strand, 27240953 - 27240780
Alignment:
| Q |
39 |
ggagaagaaggaacggtaaccaccagggaaagtggagatgacgttgttagctatgggatccaatagcaaagaaggccatgttgaggtgcatatgttccgc |
138 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||| | | || |||||| || ||||||||||| |||||||||||||||||||| |
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| T |
27240953 |
ggagaaaaaggaacggtaaccaccagggaaagtggagatgacgttgtgaacaataggatccttcagtaaagaaggccactttgaggtgcatatgttccgc |
27240854 |
T |
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| Q |
139 |
cataaatct---ttgtcgttgcagatcatgtggcggagttctgaagatacggaggagaaggcggttaaggttgt |
209 |
Q |
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| T |
27240853 |
catagatcttcgttgttgtggcaaatcatgtgacggagttctgaacatacagagaataagacgattaaggttgt |
27240780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 39 - 203
Target Start/End: Original strand, 7502018 - 7502182
Alignment:
| Q |
39 |
ggagaagaaggaacggtaaccaccagggaaagtggagatgacgttgttagctatgggatccaatagcaaagaaggccatgttgaggtgcatatgttccgc |
138 |
Q |
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||||||||| |||| ||||||||| ||||||||||||||||| | |||| | || ||||||| || |||||||| |||||||||| || |||||| |
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| T |
7502018 |
ggagaagaatgaactgtaaccaccggggaaagtggagatgacatcgttaacgattggatccataag---ggaaggccactttgaggtgcaaatattccgc |
7502114 |
T |
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| Q |
139 |
cataaa---tctttgtcgttgcagatcatgtggcggagttctgaagatacggaggagaaggcggttaa |
203 |
Q |
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| T |
7502115 |
catagattgttgttgttgttgcagatcaggtggcggagttctggagacacggtcgataaggcggttaa |
7502182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 73
Target Start/End: Original strand, 7500585 - 7500619
Alignment:
| Q |
39 |
ggagaagaaggaacggtaaccaccagggaaagtgg |
73 |
Q |
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| T |
7500585 |
ggagaagaaggaacggtaaccaccagggaaagtgg |
7500619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 191
Target Start/End: Complemental strand, 8057381 - 8057290
Alignment:
| Q |
103 |
agcaaagaaggccatgttgaggtgcatatgttccgccataaatctt---tgtcgttgcagatcatgtggcggagttctgaagatacggagga |
191 |
Q |
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||||| |||||||| || |||||||| |||||| ||||| ||| | |||||||||||||||||||||||| ||| ||||| || ||||| |
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| T |
8057381 |
agcaaggaaggccaggtggaggtgcaagtgttccaccatagatcctcgttgtcgttgcagatcatgtggcggaattcagaagacactgagga |
8057290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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