View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13307_low_4 (Length: 557)
Name: NF13307_low_4
Description: NF13307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13307_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 10 - 339
Target Start/End: Complemental strand, 37640522 - 37640193
Alignment:
| Q |
10 |
agcaatgtctagaagcttccaagcgatgggagagtgatggttccagaacaaatgagagactaaacggtgagcgaggtcgacggaagggagagtgacggcg |
109 |
Q |
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| T |
37640522 |
agcaatgtctagaagcttccaagcgatgggagagtgatggttccagaacaaatgagagactaaacggtgagcgaggtcgacggaagggagagtgacagcg |
37640423 |
T |
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| Q |
110 |
gtagagcggagtgttgagatgatttgcgacgcccatacgttaggatcggtgttgttcatcaaagctgagttggtttggagaagaatcgcgtcccatggga |
209 |
Q |
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| T |
37640422 |
gtggaacggagtgttgagatgatttgcgacgcccatacgttaggatcggtgttgttcatcaaagctgagttggtttggagaagaatcgcgtcccatggga |
37640323 |
T |
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| Q |
210 |
aacgatcgtagccggcgatggtttgggcgggaacggccatagccatcaaacaaaacgagagaaatgtgagagagtgagagtgttcagaggtgaatgacaa |
309 |
Q |
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| T |
37640322 |
aacgatcgtagccggcgatggtttgggcgggaacggccatagccatcaaacaaaacgagagaaatgtgagagagtgagagtgttcagaggtgaatgacaa |
37640223 |
T |
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| Q |
310 |
tgcatggggttgtttgtgtttatgtaatca |
339 |
Q |
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| T |
37640222 |
tgcatggggttgtttgtgtttatgtaatca |
37640193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 368 - 547
Target Start/End: Complemental strand, 37640165 - 37639973
Alignment:
| Q |
368 |
atattaaaaaattagagtcaaacattttaatccatgtacaccatggtgttgtgttgtgccaaaggtttgctacaccaccacttcta-------------t |
454 |
Q |
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| T |
37640165 |
atattaaaaaattagagtcaaacattttaatccatgtacaccatggtgttgtgttgtgccaaaggtttgctacaccaccacttctactatttttacatct |
37640066 |
T |
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| Q |
455 |
ggtcgcgatagtttcagattaaaatattcatggcgttttggaatatgactaaaaaataatgtgaattcgagtcttgaactgaggaagatgatg |
547 |
Q |
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| T |
37640065 |
ggtcgcaatagtttcagattaaaatattcatggcgttttggaatatggctaaaaaataatgtaaattcgagtcttgaactgaggaagatgatg |
37639973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 6 - 332
Target Start/End: Original strand, 2156814 - 2157140
Alignment:
| Q |
6 |
aagtagcaatgtctagaagcttccaagcgatgggagagtgatggttccagaacaaatgagagactaaacggtgagcgaggtcgacggaagggagagtgac |
105 |
Q |
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| T |
2156814 |
aagtagcaatgtctagaagcttccaaacggtgggagagtgatggttccaaaacaaatgagagactaaacggagagcgaggtcgacggaagggagagtgac |
2156913 |
T |
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| Q |
106 |
ggcggtagagcggagtgttgagatgatttgcgacgcccatacgttaggatcg--gtgttgttcatcaaagctgagttggtttggagaagaatcgcgtccc |
203 |
Q |
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| T |
2156914 |
ggcggaggaacggagtatggaagtgatttgcgacgcccatacgttaggacaggtgtgttgttcagcaaagctgagttggtttggcgaagaatcacgtccc |
2157013 |
T |
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| Q |
204 |
atgggaaacgatcgtagccggcgatggtttgggcgggaacggccatagccatcaaacaaaacgagagaaatgtgagagagtgagagtgttcagaggtgaa |
303 |
Q |
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| T |
2157014 |
atggaaaacgatcgtcaccgacga-agtttgggcgggaacgggcatagccatcaaacaaaacgagagaaacgcgagagagtaagagtgttcagaggtcaa |
2157112 |
T |
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| Q |
304 |
tgacaatgcatggggttgtttgtgtttat |
332 |
Q |
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| T |
2157113 |
tgacaatgcatgggg-tgtttgtgcttat |
2157140 |
T |
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