View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13307_low_5 (Length: 524)
Name: NF13307_low_5
Description: NF13307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13307_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 199 - 517
Target Start/End: Complemental strand, 7034670 - 7034357
Alignment:
| Q |
199 |
ctatattttgtgctttgttctgttttacatgtaaggatagttaagcaaaagttagaattagcattggtatctgactttaattttgcac----gtatctcc |
294 |
Q |
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| T |
7034670 |
ctatattttgtgctttgttctgatttacatgtatggatagttgtgcaaaagttagaattagcattggtatttgactataattttgcactcttgtatctcc |
7034571 |
T |
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| Q |
295 |
aattttctaaaagggtgtctggaataagcaacacactaggacttggcatcaaatttagcacatctaaacttatcctaaatattctttcgaaagacatttc |
394 |
Q |
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| T |
7034570 |
aattttctaaaagggtgtctggaataagcaacatactaggacttggcatcaaatttagcacatctaagcttatcctaaatatt---------gacatttc |
7034480 |
T |
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| Q |
395 |
ttgcaatcaaattacatgattcttttgctgttatatttgtactagtttttagttatctggaattacttcgtgatgattattcttgctgtttctaattctg |
494 |
Q |
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| T |
7034479 |
ttgcaatcaaattacatgattcttttgctgttatatttgtactagtttttagttatctggaattacttcgtgatgtttattcttgctgtttctaattctg |
7034380 |
T |
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| Q |
495 |
tttcatcattttgttgatgatgt |
517 |
Q |
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| T |
7034379 |
tttcatcatttggttgttgatgt |
7034357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 17 - 165
Target Start/End: Complemental strand, 7883129 - 7882981
Alignment:
| Q |
17 |
ttttcatcaccaccataagcgttcttgataatatcccaagccctttttgcagattcttgatcaattttcttctcaaaaatattaggatcaatgcactgat |
116 |
Q |
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| T |
7883129 |
ttttcatcaccaccataagcgttcttgataatatcccaagtcctttttgcagattcttgatcaattttcttctcaaaaatattaggatcaatgcactgat |
7883030 |
T |
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| Q |
117 |
gaattagaaacaagccctttgcatctttctttcttaattttcgatttgc |
165 |
Q |
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| T |
7883029 |
gaattagaaacaagccctttgcatctttctttcttaatttttgatttgc |
7882981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 20 - 165
Target Start/End: Complemental strand, 44756284 - 44756136
Alignment:
| Q |
20 |
tcatcaccaccataagcgttcttgataatat--cccaagccctttttgcagattcttgatcaattttcttctcaaaaa-tattaggatcaatgcactgat |
116 |
Q |
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| T |
44756284 |
tcatcaccacgataagcgttcttgagaatatatcccaagcaccctttgcaaattcttgatcaactatcttctaaaaaaatattagggccaatgcactgat |
44756185 |
T |
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| Q |
117 |
gaattagaaacaagccctttgcatctttctttcttaattttcgatttgc |
165 |
Q |
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| T |
44756184 |
gaattaggaacaagccttttgcatctttctttctcaattctcgatttgc |
44756136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 294 - 407
Target Start/End: Complemental strand, 29376473 - 29376360
Alignment:
| Q |
294 |
caattttctaaaagggtgtctggaataagcaacacactaggacttggcatcaaatttagcacatctaaacttatcctaaatattctttcgaaagacattt |
393 |
Q |
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||||||| ||||||||||||| |||||||||||||||||||||||| | ||||| |||||||| |||||| | |||||||||||||| ||||||||| |
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| T |
29376473 |
caatttttcaaaagggtgtctgaaataagcaacacactaggacttggtgttaaattcagcacatcaaaacttgttctaaatattctttcaaaagacattc |
29376374 |
T |
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| Q |
394 |
cttgcaatcaaatt |
407 |
Q |
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| T |
29376373 |
tttgcaatcaaatt |
29376360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 287 - 344
Target Start/End: Original strand, 16489443 - 16489500
Alignment:
| Q |
287 |
gtatctccaattttctaaaagggtgtctggaataagcaacacactaggacttggcatc |
344 |
Q |
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| T |
16489443 |
gtatctccaatttttcaaaagggtgttaggaataagtaacacactaggacttgacatc |
16489500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 431 - 505
Target Start/End: Original strand, 16490530 - 16490604
Alignment:
| Q |
431 |
ttgtactagtttttagttatctggaattacttcgtgatgattattcttgctgtttctaattctgtttcatcattt |
505 |
Q |
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| T |
16490530 |
ttgtactagttattaggtctttggaattacttaatgttgtttatttttgctgcttctaattttgtttcatcattt |
16490604 |
T |
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