View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13307_low_6 (Length: 498)

Name: NF13307_low_6
Description: NF13307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13307_low_6
NF13307_low_6
[»] chr4 (3 HSPs)
chr4 (174-479)||(34824146-34824449)
chr4 (13-113)||(21261019-21261114)
chr4 (13-113)||(35292730-35292835)
[»] chr8 (3 HSPs)
chr8 (195-472)||(28946790-28947067)
chr8 (14-55)||(11355524-11355565)
chr8 (15-67)||(34924018-34924070)
[»] chr3 (6 HSPs)
chr3 (174-475)||(42231693-42231977)
chr3 (13-113)||(42028570-42028665)
chr3 (13-113)||(39439206-39439311)
chr3 (14-60)||(14568546-14568592)
chr3 (41-122)||(32279173-32279254)
chr3 (41-113)||(24372963-24373035)
[»] chr2 (2 HSPs)
chr2 (13-65)||(28219773-28219825)
chr2 (13-114)||(10354936-10355042)
[»] chr5 (3 HSPs)
chr5 (13-113)||(4944519-4944613)
chr5 (75-121)||(11617987-11618033)
chr5 (14-55)||(32233763-32233804)
[»] chr1 (5 HSPs)
chr1 (13-60)||(8099764-8099811)
chr1 (15-65)||(15582344-15582394)
chr1 (13-50)||(8102100-8102137)
chr1 (14-55)||(42116481-42116522)
chr1 (14-55)||(49742069-49742110)
[»] scaffold0039 (1 HSPs)
scaffold0039 (15-67)||(57716-57768)
[»] chr7 (1 HSPs)
chr7 (13-65)||(36656799-36656851)


Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-110; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 174 - 479
Target Start/End: Complemental strand, 34824449 - 34824146
Alignment:
Q  174 tccaaactcactctctcactatcactaaaatggaagaacaacaagaggctccatctctcacacttcaaatcctcgccggtccacgcaacggcgaaaccca 273  Q
    ||||||||||||| ||| ||  ||||||||||||||||||||||||  | ||  |||| ||||| |||||||||||||||||||||||||| ||||||||    
T  34824449 tccaaactcactcactctct--cactaaaatggaagaacaacaagactcacccactcttacactccaaatcctcgccggtccacgcaacggagaaaccca 34824352  T
Q  274 ccaatttgaacccggatccaccatcaaaatcggtcgggtaatccgcggcaacaacctccccatcaaagatccaggtatttccaccaaacacctcactatc 373  Q
    |||||| ||||| ||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34824351 ccaattcgaacctggatccaccgtcaaaatcggtcgtgtcatccgcggcaacaacctccccatcaaagatccaggtatttccaccaaacacctcactatc 34824252  T
Q  374 catttcgattccggtaattggattctcacagatctcgattcctcaaacggtaccgttttagacaacatacccgttcctccaaataccccttttcatctca 473  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||  ||| |||||||||||||| |||||||||||||    
T  34824251 catttcgattccggtaattggattctcacagatctcgattcctctaacggcaccgttttggacaacgaacctgttcctccaaatactccttttcatctca 34824152  T
Q  474 ccgatg 479  Q
     |||||    
T  34824151 gcgatg 34824146  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 21261114 - 21261019
Alignment:
Q  13 aatatccaaacaatggaatgaaatttttgttccactccattccattccattccatgctgcttcattctgttccgctcctttagttttagattatccaaac 112  Q
    |||||| ||||||||||||| ||| ||||||||||||||||||||||||| ||     ||| ||||| | |||||| | |||||||||| ||||||||||    
T  21261114 aatatcaaaacaatggaatggaatctttgttccactccattccattccatccc-----gctccattccgctccgcttcgttagttttaggttatccaaac 21261020  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 13 - 113
Target Start/End: Original strand, 35292730 - 35292835
Alignment:
Q  13 aatatccaaacaatggaatgaaatttttgttccactccattccattccattcc-----atgctgcttcattctgttccgctcctttagttttagattatc 107  Q
    ||||||||||||||| |||||||||||| |||||  || ||||||||| | ||     || |  || ||||| |||||||||| ||||||||||||||||    
T  35292730 aatatccaaacaatgtaatgaaatttttattccatgccgttccattccgtcccgtcccattccactccattccgttccgctccgttagttttagattatc 35292829  T
Q  108 caaaca 113  Q
    ||||||    
T  35292830 caaaca 35292835  T

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Target: chr8 (Bit Score: 198; Significance: 1e-107; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 195 - 472
Target Start/End: Complemental strand, 28947067 - 28946790
Alignment:
Q  195 tcactaaaatggaagaacaacaagaggctccatctctcacacttcaaatcctcgccggtccacgcaacggcgaaacccaccaatttgaacccggatccac 294  Q
    |||||||||||||||||||||||||  | ||  |||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||    
T  28947067 tcactaaaatggaagaacaacaagacccacccactctcacactccaaatcctcgccggtccacgcaacggagaaacccaccaattcgaacctggatccac 28946968  T
Q  295 catcaaaatcggtcgggtaatccgcggcaacaacctccccatcaaagatccaggtatttccaccaaacacctcactatccatttcgattccggtaattgg 394  Q
    | ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28946967 cgtcaaaatcggtcgtgtcatccgcggcaacaacctccccatcaaagatccaggtatttccaccaaacacctcactatccatttcgattccggtaattgg 28946868  T
Q  395 attctcacagatctcgattcctcaaacggtaccgttttagacaacatacccgttcctccaaataccccttttcatctc 472  Q
    ||||||||||||||||||||||| ||||| |||||||| ||||||  ||| |||||||| ||||| ||||||||||||    
T  28946867 attctcacagatctcgattcctctaacggcaccgttttggacaacgaacctgttcctccgaatactccttttcatctc 28946790  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 11355524 - 11355565
Alignment:
Q  14 atatccaaacaatggaatgaaatttttgttccactccattcc 55  Q
    ||||||||||||||||||| ||| ||||||||| ||||||||    
T  11355524 atatccaaacaatggaatggaatctttgttccattccattcc 11355565  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 34924070 - 34924018
Alignment:
Q  15 tatccaaacaatggaatgaaatttttgttccactccattccattccattccat 67  Q
    |||||||||||||||||||||| ||| ||||| || ||||  |||||||||||    
T  34924070 tatccaaacaatggaatgaaatctttattccattcaattctgttccattccat 34924018  T

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Target: chr3 (Bit Score: 177; Significance: 3e-95; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 174 - 475
Target Start/End: Original strand, 42231693 - 42231977
Alignment:
Q  174 tccaaactcactctctcactatcactaaaatggaagaacaacaagaggctccatctctcacacttcaaatcctcgccggtccacgcaacggcgaaaccca 273  Q
    |||||||||||||||||||||||| ||||||||||||||||||||          |||||||||| ||||||||||          ||||||||||||||    
T  42231693 tccaaactcactctctcactatcagtaaaatggaagaacaacaag----------tctcacacttgaaatcctcgc----------aacggcgaaaccca 42231772  T
Q  274 ccaatttgaacccggatccaccatcaaaatcggtcgggtaatccgcggcaacaacctccccatcaaagatccaggtatttccaccaaacacctcactatc 373  Q
    |||||| ||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42231773 ccaattcgaacctggatccaccatcaaaatcggtcgggtcatacgcggcaacaacctccccatcaaagatccaggtatttccaccaaacacctcactatc 42231872  T
Q  374 catttcgat---tccggtaattggattctcacagatctcgattcctcaaacggtaccgttttagacaacatacccgttcctccaaataccccttttcatc 470  Q
    |||||||||   ||| ||||||||||||||||| ||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||    
T  42231873 catttcgattcgtcctgtaattggattctcacatatctcgattcctcaaacggcaccgttttagataacaaacccgttcctccaaataccccttttcatc 42231972  T

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Target: chr3; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 42028665 - 42028570
Alignment:
Q  13 aatatccaaacaatggaatgaaatttttgttccactccattccattccattccatgctgcttcattctgttccgctcctttagttttagattatccaaac 112  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||     ||| ||||| |||||||||| |||||||||| ||||||||||    
T  42028665 aatatccaaacaatggaatgaaatctttgttccactccattccattccattcc-----gctccattcggttccgctccgttagttttaggttatccaaac 42028571  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 39439311 - 39439206
Alignment:
Q  13 aatatccaaacaatggaatgaaatttttgttcca-----ctccattccattccattccatgctgcttcattctgttccgctcctttagttttagattatc 107  Q
    |||||||||||||||||||||||||||| |||||      ||||||| || || | |||| | ||| |||||  ||||||||| ||||||||||||||||    
T  39439311 aatatccaaacaatggaatgaaatttttattccatgtcgttccattctatcccgtcccattccgctccattccattccgctccgttagttttagattatc 39439212  T
Q  108 caaaca 113  Q
    ||||||    
T  39439211 caaaca 39439206  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 14568546 - 14568592
Alignment:
Q  14 atatccaaacaatggaatgaaatttttgttccactccattccattcc 60  Q
    ||||||||||||||||||  ||| ||||||||| |||||||||||||    
T  14568546 atatccaaacaatggaattgaatctttgttccattccattccattcc 14568592  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 122
Target Start/End: Original strand, 32279173 - 32279254
Alignment:
Q  41 gttccactccattccattccattccatgctgcttcattctgttccgctcctttagttttagattatccaaacaaagtcttaa 122  Q
    |||||| ||||||||||||| |||||  | ||| ||||| |||||||||| ||||||| |  ||||||||||| || |||||    
T  32279173 gttccattccattccattccgttccactccgctccattccgttccgctccgttagtttcatgttatccaaacagagccttaa 32279254  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 113
Target Start/End: Complemental strand, 24373035 - 24372963
Alignment:
Q  41 gttccactccattccattccattccatgctgcttcattctgttccgctcctttagttttagattatccaaaca 113  Q
    ||||| ||||||||||||||||||||| | ||| |||||  |||| |||| |||||||||  ||||| |||||    
T  24373035 gttccgctccattccattccattccattccgctccattccattccactccgttagttttaagttatcgaaaca 24372963  T

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Target: chr2 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 28219773 - 28219825
Alignment:
Q  13 aatatccaaacaatggaatgaaatttttgttccactccattccattccattcc 65  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  28219773 aatatccaaacaatggaatgaaatctttgttccactccattccattccattcc 28219825  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 114
Target Start/End: Original strand, 10354936 - 10355042
Alignment:
Q  13 aatatccaaacaatggaatgaaatttttgttcca-----ctccattccattccattccatgctgcttcattctgttccgctcctttagttttagattatc 107  Q
    |||||||||||||||||||||||||||| |||||      |||||||| | ||||  ||| |  || ||||| |||||| ||| ||||||||||||||||    
T  10354936 aatatccaaacaatggaatgaaatttttattccatgacgttccattccgtcccatctcattccactccattccgttccgatccgttagttttagattatc 10355035  T
Q  108 caaacaa 114  Q
    |||||||    
T  10355036 caaacaa 10355042  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 113
Target Start/End: Original strand, 4944519 - 4944613
Alignment:
Q  13 aatatccaaacaatggaatgaaatttttgttccactccattccattccattccatgctgcttcattctgttccgctcctttagttttagattatccaaac 112  Q
    |||||||||||||||||||| ||| ||||||||||||| ||||||| ||||||  ||    |||||| |||||||||| |||||||||| ||||||||||    
T  4944519 aatatccaaacaatggaatggaatctttgttccactccgttccatttcattcc--gc----tcattccgttccgctccgttagttttaggttatccaaac 4944612  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 121
Target Start/End: Original strand, 11617987 - 11618033
Alignment:
Q  75 cattctgttccgctcctttagttttagattatccaaacaaagtctta 121  Q
    ||||||||| |||||| ||||||||||||||||||||||||| ||||    
T  11617987 cattctgtttcgctccgttagttttagattatccaaacaaagcctta 11618033  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 32233763 - 32233804
Alignment:
Q  14 atatccaaacaatggaatgaaatttttgttccactccattcc 55  Q
    ||||||||||||||||||| ||| ||||||||| ||||||||    
T  32233763 atatccaaacaatggaatggaatctttgttccattccattcc 32233804  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 8099764 - 8099811
Alignment:
Q  13 aatatccaaacaatggaatgaaatttttgttccactccattccattcc 60  Q
    |||||||||||||||||||||||| ||||||||||||| |||| ||||    
T  8099764 aatatccaaacaatggaatgaaatctttgttccactccgttccgttcc 8099811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 15582344 - 15582394
Alignment:
Q  15 tatccaaacaatggaatgaaatttttgttccactccattccattccattcc 65  Q
    |||||||||||||||||| ||||||| ||||  ||||||||||||| ||||    
T  15582344 tatccaaacaatggaatggaatttttattccgttccattccattcccttcc 15582394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 8102137 - 8102100
Alignment:
Q  13 aatatccaaacaatggaatgaaatttttgttccactcc 50  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  8102137 aatattcaaacaatggaatgaaatctttgttccactcc 8102100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 42116522 - 42116481
Alignment:
Q  14 atatccaaacaatggaatgaaatttttgttccactccattcc 55  Q
    ||||||||||||||||||| ||| ||||||||| ||||||||    
T  42116522 atatccaaacaatggaatggaatctttgttccattccattcc 42116481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 49742069 - 49742110
Alignment:
Q  14 atatccaaacaatggaatgaaatttttgttccactccattcc 55  Q
    ||||||||||||||||||| ||| ||||||||| ||||||||    
T  49742069 atatccaaacaatggaatggaatctttgttccattccattcc 49742110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 57716 - 57768
Alignment:
Q  15 tatccaaacaatggaatgaaatttttgttccactccattccattccattccat 67  Q
    |||||||||||||||||||||| ||| ||||| || ||||| |||||||||||    
T  57716 tatccaaacaatggaatgaaatctttattccattcaattccgttccattccat 57768  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 36656851 - 36656799
Alignment:
Q  13 aatatccaaacaatggaatgaaatttttgttccactccattccattccattcc 65  Q
    ||||||||| |||||||||| ||||||||||||| |||||||| || ||||||    
T  36656851 aatatccaagcaatggaatgtaatttttgttccattccattccgttacattcc 36656799  T

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