View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13307_low_7 (Length: 439)
Name: NF13307_low_7
Description: NF13307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13307_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 11 - 424
Target Start/End: Original strand, 24893739 - 24894152
Alignment:
| Q |
11 |
caaaggagtaaaaatcttatgaaaaccaaagtttataaaaatctgttgatggcaaggactcaataaaacaaaaaattccaattttataagaacaaaaagg |
110 |
Q |
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| T |
24893739 |
caaaggagtaaaaatcttataaaaaccaaagtttataaaaatctgttgatggcaaggactcaataaaacaaaaaattccaattttataagaacaaaaagg |
24893838 |
T |
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| Q |
111 |
cctacaaagtatctggattttcctagaataccatgagataagtaaattcttatccaatctaagagcatnnnnnnnnnntgagagctataagtttaccaat |
210 |
Q |
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| T |
24893839 |
cctacaaagtatctggattttcctagaataccatgagataagtaaattcttatccaatctaagagcataaaaaaaacatgagagctataagtttaccaat |
24893938 |
T |
|
| Q |
211 |
ttgacaattagagctttggcatcacgcaaatgagacaatttttgtcgaagatcttccgcagtaatgaactgtttcccgccagagtatcctccatgtcctc |
310 |
Q |
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| T |
24893939 |
ttgacaattagagctttggcatcacgcaaatgagacaatttttgtcgaagatcttctgcagtaatgaactgtttcccgccagagtatcctccatgtcctc |
24894038 |
T |
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| Q |
311 |
caacagcagttatcatttcaccatgagacaaaagctggcaccgcccacatagaacagttttaagctggtgatgtttcttcttctgcaacagaataacaaa |
410 |
Q |
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| T |
24894039 |
caacagcagttatcatttcaccatgagacaaaagctggcaccgcccacatagaacagttttaagctggtgatgtttcttcttctgcaacagaataacaaa |
24894138 |
T |
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| Q |
411 |
cacataagcaattt |
424 |
Q |
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| T |
24894139 |
cacataagcaattt |
24894152 |
T |
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