View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13307_low_8 (Length: 419)
Name: NF13307_low_8
Description: NF13307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13307_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 19 - 408
Target Start/End: Complemental strand, 47710297 - 47709908
Alignment:
| Q |
19 |
taaccctcttctacatgaactctaaataacttattatgcaattccactattcgtatatgaagtttgtacacaatatatattaaagctaacatagctgcgt |
118 |
Q |
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| T |
47710297 |
taaccctcttctacatgaactctaaataacttattatgcaattccactattcgtatatgaagtttgtacacaatatatattagagctagcatagctgcgt |
47710198 |
T |
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| Q |
119 |
tcttattcttttatacagaaagatatttagttttggaaacaggtgctattttatatctcttttttcttttctgttctgagaagacagaacacaactatgt |
218 |
Q |
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| T |
47710197 |
tcttattcttttatacagaaagatatttagttttggaaacaggtgctattttatatctcttttttcttttcttttctgagaagacagaacacaactatgt |
47710098 |
T |
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| Q |
219 |
tagtttaatattgcaagttgttgaagattttgattattatcagatcaaataacattgaagaatccaattatatcgattatagttaatggatatccttcta |
318 |
Q |
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| T |
47710097 |
tagtttaatattgcaagttgttgaagattttgattattatcagatcaaataacattgaagaatccaattatatcgattatagttaatggatatccttcta |
47709998 |
T |
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| Q |
319 |
tatacctattaatacattttgagcttgtaggctgttcccttgtaatcataggaaaatgtgctgcagcgtgtttttgttacagtgatgatg |
408 |
Q |
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| T |
47709997 |
tgtacctattaatacattttgagcttgtaggctgttcccttgtaatcataggaaaatgtgctgcagcgtgtttttgttacagtgatgatg |
47709908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 291
Target Start/End: Original strand, 16560366 - 16560394
Alignment:
| Q |
263 |
tcaaataacattgaagaatccaattatat |
291 |
Q |
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| T |
16560366 |
tcaaataacattgaagaatccaattatat |
16560394 |
T |
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