View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13307_low_9 (Length: 414)
Name: NF13307_low_9
Description: NF13307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13307_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 19 - 403
Target Start/End: Original strand, 26352557 - 26352940
Alignment:
| Q |
19 |
tactagaaataatgcttttgttaggaggacaaacaatgtttttatgtagaatatttttataagtaaaaagggcaaaaaaggaatataaaaattgtaatat |
118 |
Q |
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| T |
26352557 |
tactagaaataatgttttt-ttaggaggacaaacaatgtttttatgtagaatatttttataagtaaaaagggcaaaaaaggaatataaaaattgtaatat |
26352655 |
T |
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| Q |
119 |
attcggctccatcattttccaaacgatgggatatggtttttgtcctgttccattatgaaatattcaaactatgaaatgaaaactataatctttctattat |
218 |
Q |
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| T |
26352656 |
attcggctccatcattttccaaacgatggaatatggtttttgtcctgttccattatgcaatattcaaactatgaaatgaaaactataatctttctattat |
26352755 |
T |
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| Q |
219 |
gcttcacttcatttcattttgttcaatggcaaaactaacacgttttctatgagggccccaaatgtaaacaaatagaatatttttgaaaaccagtaatata |
318 |
Q |
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| T |
26352756 |
gcttcacttcatttcattttgttcaatggcaaaactaacacgttttttatgagggccccaaatgtaaacaaatagaatatttttgaaaactagtaatata |
26352855 |
T |
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| Q |
319 |
ctaaaattaatctataagaaaaaatgagcaacaatttaataacaaannnnnnnagtttgacgatacttcaaagaatcatattcat |
403 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||| |
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| T |
26352856 |
ctaaaattaatctataagaaaaaatgagcaacaatttaataacaattttttttagttcgacgataattcaaagaatcatattcat |
26352940 |
T |
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