View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13308_high_3 (Length: 220)

Name: NF13308_high_3
Description: NF13308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13308_high_3
NF13308_high_3
[»] chr2 (15 HSPs)
chr2 (20-202)||(30182840-30183022)
chr2 (20-202)||(30069337-30069519)
chr2 (21-202)||(30253238-30253419)
chr2 (20-202)||(30791399-30791581)
chr2 (20-202)||(30024262-30024444)
chr2 (20-202)||(30036253-30036435)
chr2 (20-202)||(30117678-30117860)
chr2 (20-202)||(30230391-30230573)
chr2 (20-202)||(30132435-30132617)
chr2 (20-202)||(30173156-30173338)
chr2 (21-202)||(30160751-30160932)
chr2 (20-195)||(30280707-30280882)
chr2 (50-106)||(30031253-30031309)
chr2 (50-106)||(30225391-30225447)
chr2 (32-98)||(30104616-30104682)


Alignment Details
Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 20 - 202
Target Start/End: Complemental strand, 30183022 - 30182840
Alignment:
Q  20 gaatgtggcgttgagattattgtagaacaagatgaaatggctgacacagttccaatacttattttcccagaattaacatttttgagttttcgagatttga 119  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  30183022 gaatgtggcgttgagattattgtagaacaagatgaaatgtctgacacagttccaatacttaatttcccagaattaacatttttgagttttcgagatttga 30182923  T
Q  120 aacaacttcaaagcttctaccgtgaattaaataccctggattttcctgctttacaagatgtggatgtgcttcattgtgacaag 202  Q
    |||||||||||||||||||||||| ||||  ||||||||||| ||||||||||  | ||||||||||||||||||||||||||    
T  30182922 aacaacttcaaagcttctaccgtggattacttaccctggattgtcctgctttaagacatgtggatgtgcttcattgtgacaag 30182840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 20 - 202
Target Start/End: Original strand, 30069337 - 30069519
Alignment:
Q  20 gaatgtggcgttgagattattgtagaacaagatgaaatggctgacacagttccaatacttattttcccagaattaacatttttgagttttcgagatttga 119  Q
    ||||||||| | ||||||||||||| |||||||||| |||   ||| | |||||||| ||||||||||||||||||||| ||||||||| | ||||||||    
T  30069337 gaatgtggcatggagattattgtagcacaagatgaattggtcaacagatttccaatatttattttcccagaattaacatctttgagtttccaagatttga 30069436  T
Q  120 aacaacttcaaagcttctaccgtgaattaaataccctggattttcctgctttacaagatgtggatgtgcttcattgtgacaag 202  Q
     |||||||| ||||||||||  || |||| ||||| |||||| ||||| ||||  ||||||||||||||||||||||||||||    
T  30069437 cacaacttcgaagcttctacaatggattacataccttggattgtcctgttttaagagatgtggatgtgcttcattgtgacaag 30069519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 21 - 202
Target Start/End: Original strand, 30253238 - 30253419
Alignment:
Q  21 aatgtggcgttgagattattgtagaacaagatgaaatggctgacacagttccaatacttattttcccagaattaacatttttgagttttcgagatttgaa 120  Q
    |||||||| | |||||||| |||| ||||||||||| ||||||||| |||||| |||||| ||||||||||||||||| |||||||||||| |||||||     
T  30253238 aatgtggcatagagattatagtagcacaagatgaaacggctgacactgttccagtacttaatttcccagaattaacatctttgagttttcgtgatttgac 30253337  T
Q  121 acaacttcaaagcttctaccgtgaattaaataccctggattttcctgctttacaagatgtggatgtgcttcattgtgacaag 202  Q
    |||||||| ||| ||||||| || |||| ||||| | |||| || |   ||| |||||||||||||||||||||||||||||    
T  30253338 acaacttcgaagattctaccttggattacataccttagattgtcttttcttaaaagatgtggatgtgcttcattgtgacaag 30253419  T

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Target: chr2; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 202
Target Start/End: Original strand, 30791399 - 30791581
Alignment:
Q  20 gaatgtggcgttgagattattgtagaacaagatgaaatggctgacacagttccaatacttattttcccagaattaacatttttgagttttcgagatttga 119  Q
    ||||||||||| || |||||||||| ||| |||||||||| ||||| |||||||||||||||||||||||||||||| | ||||||||| | ||||||||    
T  30791399 gaatgtggcgtagaaattattgtagcacatgatgaaatggttgacagagttccaatacttattttcccagaattaacttctttgagtttccaagatttga 30791498  T
Q  120 aacaacttcaaagcttctaccgtgaattaaataccctggattttcctgctttacaagatgtggatgtgcttcattgtgacaag 202  Q
     | |||||| ||||||||||  || |||  ||||| |||||| ||| | ||||  |||| |||||||||||||||||||||||    
T  30791499 cagaacttcgaagcttctactatggatttcataccttggattgtccagttttaagagatctggatgtgcttcattgtgacaag 30791581  T

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Target: chr2; HSP #5
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 20 - 202
Target Start/End: Original strand, 30024262 - 30024444
Alignment:
Q  20 gaatgtggcgttgagattattgtagaacaagatgaaatggctgacacagttccaatacttattttcccagaattaacatttttgagttttcgagatttga 119  Q
    ||||||||| | ||| |||||| || ||| |||||| |||||||||||  ||| ||||||||||||||||||||||||| |||||||||||||||||||     
T  30024262 gaatgtggcatagagtttattgcagcacatgatgaattggctgacacatatccgatacttattttcccagaattaacatctttgagttttcgagatttgt 30024361  T
Q  120 aacaacttcaaagcttctaccgtgaattaaataccctggattttcctgctttacaagatgtggatgtgcttcattgtgacaag 202  Q
     |||||||  ||||||||  | || |||| ||||| |||||| ||||| ||||  | ||||||||||||||||||||||||||    
T  30024362 cacaacttagaagcttctctcatggattacataccttggattgtcctgttttaagacatgtggatgtgcttcattgtgacaag 30024444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 20 - 202
Target Start/End: Complemental strand, 30036435 - 30036253
Alignment:
Q  20 gaatgtggcgttgagattattgtagaacaagatgaaatggctgacacagttccaatacttattttcccagaattaacatttttgagttttcgagatttga 119  Q
    ||||||||| | ||| |||||| || ||| |||||| |||||||||||  ||| ||||||||||||||||||||||||| |||||||||||||||||||     
T  30036435 gaatgtggcatagagtttattgcagcacatgatgaattggctgacacatatccgatacttattttcccagaattaacatctttgagttttcgagatttgt 30036336  T
Q  120 aacaacttcaaagcttctaccgtgaattaaataccctggattttcctgctttacaagatgtggatgtgcttcattgtgacaag 202  Q
     |||||||  ||||||||  | || |||| ||||| |||||| ||||| ||||  | ||||||||||||||||||||||||||    
T  30036335 cacaacttagaagcttctctcatggattacataccttggattgtcctgttttaagacatgtggatgtgcttcattgtgacaag 30036253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 20 - 202
Target Start/End: Complemental strand, 30117860 - 30117678
Alignment:
Q  20 gaatgtggcgttgagattattgtagaacaagatgaaatggctgacacagttccaatacttattttcccagaattaacatttttgagttttcgagatttga 119  Q
    ||||||||| | ||| |||||| || ||| |||||| |||||||||||  ||| ||||||||||||||||||||||||| |||||||||||||||||||     
T  30117860 gaatgtggcatagagtttattgcagcacatgatgaattggctgacacatatccgatacttattttcccagaattaacatctttgagttttcgagatttgt 30117761  T
Q  120 aacaacttcaaagcttctaccgtgaattaaataccctggattttcctgctttacaagatgtggatgtgcttcattgtgacaag 202  Q
     |||||||  ||||||||  | || |||| ||||| |||||| ||||| ||||  | ||||||||||||||||||||||||||    
T  30117760 cacaacttagaagcttctctcatggattacataccttggattgtcctgttttaagacatgtggatgtgcttcattgtgacaag 30117678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 20 - 202
Target Start/End: Complemental strand, 30230573 - 30230391
Alignment:
Q  20 gaatgtggcgttgagattattgtagaacaagatgaaatggctgacacagttccaatacttattttcccagaattaacatttttgagttttcgagatttga 119  Q
    ||||||||| | ||| |||||| || ||| |||||| |||||||||||  ||| ||||||||||||||||||||||||| |||||||||||||||||||     
T  30230573 gaatgtggcatagagtttattgcagcacatgatgaattggctgacacatatccgatacttattttcccagaattaacatctttgagttttcgagatttgt 30230474  T
Q  120 aacaacttcaaagcttctaccgtgaattaaataccctggattttcctgctttacaagatgtggatgtgcttcattgtgacaag 202  Q
     |||||||  ||||||||  | || |||| ||||| |||||| ||||| ||||  | ||||||||||||||||||||||||||    
T  30230473 cacaacttagaagcttctctcatggattacataccttggattgtcctgttttaagacatgtggatgtgcttcattgtgacaag 30230391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 20 - 202
Target Start/End: Complemental strand, 30132617 - 30132435
Alignment:
Q  20 gaatgtggcgttgagattattgtagaacaagatgaaatggctgacacagttccaatacttattttcccagaattaacatttttgagttttcgagatttga 119  Q
    ||||||||| | ||| |||||| || ||| |||||| |||||||||||  ||| ||||||||||||||||||||||||| |||||||||||||||||||     
T  30132617 gaatgtggcatagagtttattgcagcacatgatgaattggctgacacatatccgatacttattttcccagaattaacatctttgagttttcgagatttgt 30132518  T
Q  120 aacaacttcaaagcttctaccgtgaattaaataccctggattttcctgctttacaagatgtggatgtgcttcattgtgacaag 202  Q
     |||||||  ||||||||  | || |||| | ||| |||||| ||||| ||||  | ||||||||||||||||||||||||||    
T  30132517 cacaacttagaagcttctctcatggattacanaccttggattgtcctgttttaagacatgtggatgtgcttcattgtgacaag 30132435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 20 - 202
Target Start/End: Original strand, 30173156 - 30173338
Alignment:
Q  20 gaatgtggcgttgagattattgtagaacaagatgaaatggctgacacagttccaatacttattttcccagaattaacatttttgagttttcgagatttga 119  Q
    ||||||||| | ||||||||||||| ||| ||||||||||||||||||  |||||  |||||||| ||| ||||||||| | ||  |||  |||| ||||    
T  30173156 gaatgtggcatagagattattgtagcacaggatgaaatggctgacacaaatccaaagcttatttttccaaaattaacatctctgtctttaagagaattga 30173255  T
Q  120 aacaacttcaaagcttctaccgtgaattaaataccctggattttcctgctttacaagatgtggatgtgcttcattgtgacaag 202  Q
     |||||||| ||||||||| | || || | ||||| |||||| ||||| ||||  |||| |||||||| ||||||||||||||    
T  30173256 cacaacttcgaagcttctatcatgcatcacataccttggattctcctgttttaagagatatggatgtgtttcattgtgacaag 30173338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 21 - 202
Target Start/End: Original strand, 30160751 - 30160932
Alignment:
Q  21 aatgtggcgttgagattattgtagaacaagatgaaatggctgacacagttccaatacttattttcccagaattaacatttttgagttttcgagatttgaa 120  Q
    |||||||||| ||||||||||| |  || |||||||| ||||||||| |||||||  ||||||||||| ||||||| | | |  |||||||||| |||      
T  30160751 aatgtggcgtagagattattgtggctcatgatgaaatagctgacacaattccaatttttattttcccaaaattaacgtctctatgttttcgagaattgtc 30160850  T
Q  121 acaacttcaaagcttctaccgtgaattaaataccctggattttcctgctttacaagatgtggatgtgcttcattgtgacaag 202  Q
    |||||||| |||||||||||||| || | ||||| |||||| ||||   |||   |||||||||||| ||||||||||||||    
T  30160851 acaacttcgaagcttctaccgtgtatcacataccttggattgtcctttattaagtgatgtggatgtgtttcattgtgacaag 30160932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 195
Target Start/End: Original strand, 30280707 - 30280882
Alignment:
Q  20 gaatgtggcgttgagattattgtagaacaagatgaaatggctgacacagttccaatacttattttcccagaattaacatttttgagttttcgagatttga 119  Q
    ||||||||||| ||||||||||| |  || |||||||| || |||||| |||||||  ||||||||||| || |||| | | |  |||||||||| |||     
T  30280707 gaatgtggcgtagagattattgtggctcatgatgaaatagcagacacaattccaatgtttattttcccaaaactaacgtctctatgttttcgagagttgc 30280806  T
Q  120 aacaacttcaaagcttctaccgtgaattaaataccctggattttcctgctttacaagatgtggatgtgcttcattg 195  Q
     |||||||| |||||||||||||| || | ||||| |||||| |||||  ||| |||||||||||||| |||||||    
T  30280807 cacaacttcgaagcttctaccgtgtatcacataccttggattgtcctgtattaaaagatgtggatgtgtttcattg 30280882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 30031253 - 30031309
Alignment:
Q  50 gatgaaatggctgacacagttccaatacttattttcccagaattaacatttttgagt 106  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||    
T  30031253 gatgaaatggctgacacagttccaatacttgttttcccaaaattaacatctttgagt 30031309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 30225391 - 30225447
Alignment:
Q  50 gatgaaatggctgacacagttccaatacttattttcccagaattaacatttttgagt 106  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||    
T  30225391 gatgaaatggctgacacagttccaatacttgttttcccaaaattaacatctttgagt 30225447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 98
Target Start/End: Original strand, 30104616 - 30104682
Alignment:
Q  32 gagattattgtagaacaagatgaaatggctgacacagttccaatacttattttcccagaattaacat 98  Q
    |||| |||||| | ||| ||||||||||| ||  |||||||||||||| |||||||| |||||||||    
T  30104616 gagactattgttgcacaggatgaaatggccgatgcagttccaatacttgttttcccaaaattaacat 30104682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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