View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13308_low_1 (Length: 505)

Name: NF13308_low_1
Description: NF13308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13308_low_1
NF13308_low_1
[»] chr5 (6 HSPs)
chr5 (22-384)||(43408497-43408861)
chr5 (387-486)||(17684011-17684110)
chr5 (387-486)||(17690937-17691036)
chr5 (387-486)||(17702095-17702194)
chr5 (387-486)||(17570265-17570364)
chr5 (387-484)||(17563169-17563266)
[»] chr7 (6 HSPs)
chr7 (387-486)||(14661151-14661250)
chr7 (387-486)||(14652716-14652815)
chr7 (387-486)||(14627299-14627398)
chr7 (387-486)||(14750249-14750348)
chr7 (387-486)||(14758171-14758270)
chr7 (387-484)||(14765333-14765430)
[»] chr1 (4 HSPs)
chr1 (387-468)||(15195795-15195876)
chr1 (387-468)||(15216213-15216294)
chr1 (390-454)||(15196460-15196524)
chr1 (390-454)||(15216878-15216942)
[»] scaffold1961 (1 HSPs)
scaffold1961 (387-454)||(158-225)


Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 22 - 384
Target Start/End: Original strand, 43408497 - 43408861
Alignment:
Q  22 ccttggtgttattgagtttgttatctccaatcaaaccctcatcaattaccgtccacaacttgatcatctctctaatgctcttgaggtatatatgtttgtt 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||    
T  43408497 ccttggtgttattgagtttgttatctccaatcaaaccctcatcaattaccgtccacaacttgatcatctctctaatgctcttgaggtat----gtttgtt 43408592  T
Q  122 acttcttcttgaaattaaattaacaaatgttagaaacatacatgagattgaatatggatccatcttttgctgatgcaggctgttgattttagaagtagtc 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43408593 acttcttcttgaaattaaattaacaaatgttagaaacatacatgagattgaatatggatccatcttttgctgatgcaggctgttgattttagaagtagtc 43408692  T
Q  222 acaacatgaatatcccacaagcagtaaaggta---agcaaaca---atcatcagatcatagtactggatttgattaaatcaacaaaaactaaataaaatt 315  Q
    ||||||||||||||||||||||||||||||||   ||||||||   |||||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  43408693 acaacatgaatatcccacaagcagtaaaggtaattagcaaacaatcatcatcagatcatagtactggatttgattagatcaacaaaaactatataaaatt 43408792  T
Q  316 gtttctaaaaatgatatgataatgaataattaggtatttgaagagctatatgaagcagcagtgaacgag 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  43408793 gtttctaaaaatgatatgataatgaataattaggtatttgaagagctatatgaagcagcggtgaacgag 43408861  T

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Target: chr5; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 387 - 486
Target Start/End: Complemental strand, 17684110 - 17684011
Alignment:
Q  387 gaacctgtggagagaaaatgttatttattcaaaccagataaggactcaactgtcgaatacgcttttggagtttgtattcaaggagcgtgccggggaagat 486  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  17684110 gaacctgtggagagaaattgttatttattcaaaccagataaggactcaactgtcgaatacgcttttggagtttgtatttaaggagtgtgccggggaagat 17684011  T

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Target: chr5; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 387 - 486
Target Start/End: Complemental strand, 17691036 - 17690937
Alignment:
Q  387 gaacctgtggagagaaaatgttatttattcaaaccagataaggactcaactgtcgaatacgcttttggagtttgtattcaaggagcgtgccggggaagat 486  Q
    |||||||||||||||||||||||||||||||||||||||||||| || | ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  17691036 gaacctgtggagagaaaatgttatttattcaaaccagataaggaatcgattgtcgaatatgcttttggagtttgtattcaaggagcgtgccggggaagat 17690937  T

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Target: chr5; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 387 - 486
Target Start/End: Complemental strand, 17702194 - 17702095
Alignment:
Q  387 gaacctgtggagagaaaatgttatttattcaaaccagataaggactcaactgtcgaatacgcttttggagtttgtattcaaggagcgtgccggggaagat 486  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | || ||||||||||||||||||    
T  17702194 gaacctgtggagagaaaatgttatttattcaaaccagataaggactcgactgtcgaatacgcttttggagtttgtacttaaagagcgtgccggggaagat 17702095  T

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Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 387 - 486
Target Start/End: Original strand, 17570265 - 17570364
Alignment:
Q  387 gaacctgtggagagaaaatgttatttattcaaaccagataaggactcaactgtcgaatacgcttttggagtttgtattcaaggagcgtgccggggaagat 486  Q
    ||||||||||| ||| ||||||||||| ||||| ||||| ||||||| ||||||||||| ||||||||| || |||| |||||| ||||| |||||||||    
T  17570265 gaacctgtggacagagaatgttatttactcaaaacagatcaggactcgactgtcgaatatgcttttggaattagtatgcaaggaacgtgctggggaagat 17570364  T

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Target: chr5; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 387 - 484
Target Start/End: Original strand, 17563169 - 17563266
Alignment:
Q  387 gaacctgtggagagaaaatgttatttattcaaaccagataaggactcaactgtcgaatacgcttttggagtttgtattcaaggagcgtgccggggaag 484  Q
    |||||||||||||||||||||| || ||||||||||||||||||||| ||||| ||||| ||||||||| || |||  ||  ||||||||||| ||||    
T  17563169 gaacctgtggagagaaaatgttcttcattcaaaccagataaggactcgactgttgaatatgcttttggaattagtacgcagtgagcgtgccggcgaag 17563266  T

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Target: chr7 (Bit Score: 96; Significance: 7e-47; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 387 - 486
Target Start/End: Original strand, 14661151 - 14661250
Alignment:
Q  387 gaacctgtggagagaaaatgttatttattcaaaccagataaggactcaactgtcgaatacgcttttggagtttgtattcaaggagcgtgccggggaagat 486  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14661151 gaacctgtggagagaaaatgttatttattcaaaccagataaggactcgactgtcgaatacgcttttggagtttgtattcaaggagcgtgccggggaagat 14661250  T

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Target: chr7; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 387 - 486
Target Start/End: Original strand, 14652716 - 14652815
Alignment:
Q  387 gaacctgtggagagaaaatgttatttattcaaaccagataaggactcaactgtcgaatacgcttttggagtttgtattcaaggagcgtgccggggaagat 486  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  14652716 gaacctgtggagagaaaatgttatttattcaaaccagataaggactcgattgtcgaatacgcttttggagtttgtatttaaggagcgtgccggggaagat 14652815  T

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Target: chr7; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 387 - 486
Target Start/End: Original strand, 14627299 - 14627398
Alignment:
Q  387 gaacctgtggagagaaaatgttatttattcaaaccagataaggactcaactgtcgaatacgcttttggagtttgtattcaaggagcgtgccggggaagat 486  Q
    |||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||| || ||||||||||||||||||    
T  14627299 gaacctgtggagagaaaatgttatttattcaaaccagataaggaatcgattgtcgaatacgcttttggagtttgtatttaaagagcgtgccggggaagat 14627398  T

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Target: chr7; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 387 - 486
Target Start/End: Complemental strand, 14750348 - 14750249
Alignment:
Q  387 gaacctgtggagagaaaatgttatttattcaaaccagataaggactcaactgtcgaatacgcttttggagtttgtattcaaggagcgtgccggggaagat 486  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| | |||||||    
T  14750348 gaacctgtggagagagaatgttatttattcaaaccagataaggactcgactgtcgaatacgcttttggagtttgtattcaaggagcatgctgcggaagat 14750249  T

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Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 387 - 486
Target Start/End: Complemental strand, 14758270 - 14758171
Alignment:
Q  387 gaacctgtggagagaaaatgttatttattcaaaccagataaggactcaactgtcgaatacgcttttggagtttgtattcaaggagcgtgccggggaagat 486  Q
    ||||||||||| ||| ||||||||||| ||||| ||||| ||||||| ||||||||||| ||||||||| || |||| |||||| ||||| |||||||||    
T  14758270 gaacctgtggacagagaatgttatttactcaaaacagatcaggactcgactgtcgaatatgcttttggaattagtatgcaaggaacgtgctggggaagat 14758171  T

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Target: chr7; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 387 - 484
Target Start/End: Complemental strand, 14765430 - 14765333
Alignment:
Q  387 gaacctgtggagagaaaatgttatttattcaaaccagataaggactcaactgtcgaatacgcttttggagtttgtattcaaggagcgtgccggggaag 484  Q
    |||||||||||||||||||||| || ||||||||||||||||||||| ||||| ||||| ||||||||| || |||  ||  ||||||||||| ||||    
T  14765430 gaacctgtggagagaaaatgttcttcattcaaaccagataaggactcgactgttgaatatgcttttggaattagtacacagtgagcgtgccggcgaag 14765333  T

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Target: chr1 (Bit Score: 54; Significance: 8e-22; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 387 - 468
Target Start/End: Complemental strand, 15195876 - 15195795
Alignment:
Q  387 gaacctgtggagagaaaatgttatttattcaaaccagataaggactcaactgtcgaatacgcttttggagtttgtattcaag 468  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||| ||| || |||| ||||    
T  15195876 gaacctgtggagcgaaaatgttatttattcaaaccagataaggactcgattgtcgaatacgctttgggaattagtatgcaag 15195795  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 387 - 468
Target Start/End: Complemental strand, 15216294 - 15216213
Alignment:
Q  387 gaacctgtggagagaaaatgttatttattcaaaccagataaggactcaactgtcgaatacgcttttggagtttgtattcaag 468  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||| ||| || |||| ||||    
T  15216294 gaacctgtggagcgaaaatgttatttattcaaaccagataaggactcgattgtcgaatacgctttgggaattagtatgcaag 15216213  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 390 - 454
Target Start/End: Complemental strand, 15196524 - 15196460
Alignment:
Q  390 cctgtggagagaaaatgttatttattcaaaccagataaggactcaactgtcgaatacgcttttgg 454  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||    
T  15196524 cctgtggagagaaaatgttatttattcaaaccagataaggactcgattgtcgaatatgcttttgg 15196460  T

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Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 390 - 454
Target Start/End: Complemental strand, 15216942 - 15216878
Alignment:
Q  390 cctgtggagagaaaatgttatttattcaaaccagataaggactcaactgtcgaatacgcttttgg 454  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||    
T  15216942 cctgtggagagaaaatgttatttattcaaaccagataaggactcgattgtcgaatatgcttttgg 15216878  T

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Target: scaffold1961 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold1961
Description:

Target: scaffold1961; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 387 - 454
Target Start/End: Complemental strand, 225 - 158
Alignment:
Q  387 gaacctgtggagagaaaatgttatttattcaaaccagataaggactcaactgtcgaatacgcttttgg 454  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | | | ||||| ||||||||    
T  225 gaacctgtggagagaaaatgttatttattcaaaccagataaggactcgatttttgaatatgcttttgg 158  T

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