View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13308_low_2 (Length: 472)
Name: NF13308_low_2
Description: NF13308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13308_low_2 |
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| [»] scaffold2028 (1 HSPs) |
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| [»] scaffold0571 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 100 - 293
Target Start/End: Original strand, 12830141 - 12830334
Alignment:
| Q |
100 |
cagttacaattgttaagctagatcaattacacatagttacttgctatacacgtaagaaatacatcttaatctatttgtcctttaacacttcatgatatct |
199 |
Q |
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| T |
12830141 |
cagttacaattgttaagctagatcaattacacatagttacttgctatacacgtaagaaatacatcttaatctatttgtcctttaacacttcatgatatct |
12830240 |
T |
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| Q |
200 |
attttctttattgcaaaaaatatatgccaatggttcactccatgtttgaggcatgtgattattcacatagcagtgtatgtggaatcctttgatg |
293 |
Q |
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| T |
12830241 |
attttctttattgcaaaaactatatgccaatggttcactccatgtttgaggcatgtgattattcacatagcagtgtatgtggaatcctttgatg |
12830334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 357 - 457
Target Start/End: Original strand, 12830398 - 12830498
Alignment:
| Q |
357 |
tggatgaatgtttctctatttctttctcagctctctctcctgcttttgtcacatgtaggtccatttgtgcttctgcctcttttgccaacctaacttcatg |
456 |
Q |
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| T |
12830398 |
tggatgaatgtttctctatttctttctcagctctctctcctgcttttgtcacatgtaggtccatttgtgcttctgcctcttttgccaacctaacttcatg |
12830497 |
T |
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| Q |
457 |
a |
457 |
Q |
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| T |
12830498 |
a |
12830498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 107 - 186
Target Start/End: Original strand, 25974028 - 25974107
Alignment:
| Q |
107 |
aattgttaagctagatcaattacacatagttacttgctatacacgtaagaaatacatcttaatctatttgtcctttaaca |
186 |
Q |
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| T |
25974028 |
aattgttaagctagatcaattacacatagttacttgctatacaagtaacagatacatctcaatctatttgtcctttaaca |
25974107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2028 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold2028
Description:
Target: scaffold2028; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 100 - 163
Target Start/End: Complemental strand, 252 - 189
Alignment:
| Q |
100 |
cagttacaattgttaagctagatcaattacacatagttacttgctatacacgtaagaaatacat |
163 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||| |||| | |||||| |
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| T |
252 |
cagttacatttgttaagctagatcaattacacatagttacttgctatacaagtaacagatacat |
189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0571 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0571
Description:
Target: scaffold0571; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 100 - 163
Target Start/End: Original strand, 6155 - 6218
Alignment:
| Q |
100 |
cagttacaattgttaagctagatcaattacacatagttacttgctatacacgtaagaaatacat |
163 |
Q |
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| T |
6155 |
cagttacatttgttaagctagatcaattacacatagttacttgctatacaagtaacagatacat |
6218 |
T |
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