View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13308_low_4 (Length: 271)
Name: NF13308_low_4
Description: NF13308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13308_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 49004903 - 49004651
Alignment:
| Q |
1 |
tcgagcattttgcagaagagcattggcttcctcatttgaggcatcgagtgcacggagttctttgatttcttcctgccatttttcaacctgctccttgtga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49004903 |
tcgagcattttgcagaagagcattggcttcctcatttgaggcatcgagtgctcggagttctttgatttcttcctgccatttttcaacctgctccttgtga |
49004804 |
T |
|
| Q |
101 |
atcctgcttatttgaaagttaaaagaatcacaacataaaaagtcaaaaactaacaatatttaaagtgaaagatagtttaaacattgaatgttcaatggta |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49004803 |
atcctgcttatttgaaagttaaaagaatcacaccataaaaagtcaaaaactaacaatatttaaagtgaaagatagtttaaacattgaatgttcaatggta |
49004704 |
T |
|
| Q |
201 |
acttcataactcacataatcagtttctcttcaaattcattgcatagctcctta |
253 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49004703 |
acttcataactcacataatcagtttctcttcaaattcattgcatagctcctta |
49004651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 38117100 - 38116849
Alignment:
| Q |
1 |
tcgagcattttgcagaagagcattggcttcctcatttgaggcatcgagtgcacggagttctttgatttcttcctgccatttttcaacctgctccttgtga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38117100 |
tcgagcattttgcagaagagcattggcttcctcatttgaggcatcgagtgcacggagttctttgatttcttcctgccatttttcaacctgctccttgtga |
38117001 |
T |
|
| Q |
101 |
atcctgcttatttgaaagttaaaagaatcacaacataaaaagtcaaaaactaacaatatttaaagtgaaagatagtttaaacattgaatgttcaatggta |
200 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
38117000 |
atcctgcttatttgaaagttaaaagaatcacaccataaaaagtcaaaaactaacaatattt-aagtgaaagatagtttaaacattgaatgttcaatggta |
38116902 |
T |
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| Q |
201 |
acttcataactcacataatcagtttctcttcaaattcattgcatagctcctta |
253 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38116901 |
acttcattactcacataatcagtttctcttcaaattcattgcatagctcctta |
38116849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 38160926 - 38160674
Alignment:
| Q |
1 |
tcgagcattttgcagaagagcattggcttcctcatttgaggcatcgagtgcacggagttctttgatttcttcctgccatttttcaacctgctccttgtga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
38160926 |
tcgagcattttgcagaagagcattggcttcctcatttgaggcatcaagtgcacgcagttctttgatttcttcctgccatttttcgacctgctccttgtga |
38160827 |
T |
|
| Q |
101 |
atcctgcttatttgaaagttaaaagaatcacaacataaaaagtcaaaaactaacaatatttaaagtgaaagatagtttaaacattgaatgttcaatggta |
200 |
Q |
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|
||||||| |||| ||||||||||||||| ||| || |||||||||||||||||||||||| ||||||||||||||||| | | ||||||||||||||||| |
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| T |
38160826 |
atcctgcatattggaaagttaaaagaataacaccacaaaaagtcaaaaactaacaatattaaaagtgaaagatagtttcagctttgaatgttcaatggta |
38160727 |
T |
|
| Q |
201 |
acttcataactcacataatcagtttctcttcaaattcattgcatagctcctta |
253 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
38160726 |
acttcataactcgcataatcagtttctcttcaaattcattgcatagctcctta |
38160674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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