View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13309_high_3 (Length: 242)
Name: NF13309_high_3
Description: NF13309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13309_high_3 |
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| [»] scaffold0041 (1 HSPs) |
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| [»] scaffold0645 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 104; Significance: 6e-52; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 63 - 174
Target Start/End: Original strand, 42992378 - 42992489
Alignment:
| Q |
63 |
ttatattgtcaaatttcagaagaagaactaaaattgaaaaaccgaacagaataaactaaattttagtttatcgtaaaccgaattgccgaacacaaaaata |
162 |
Q |
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| T |
42992378 |
ttatattgtcaaatttcaaaagaagaactaaaattgaaaaaccgaacagaataaactaaattttagtttatcgtaaaccgaattgccgaacacaaaaata |
42992477 |
T |
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| Q |
163 |
gatttcattatt |
174 |
Q |
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||||||||||| |
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| T |
42992478 |
aatttcattatt |
42992489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 224
Target Start/End: Complemental strand, 8206121 - 8206089
Alignment:
| Q |
192 |
ctaaattgccttgggaaagaggtgggtaaactg |
224 |
Q |
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| T |
8206121 |
ctaaattgccttgggaaagaggtgggtaaactg |
8206089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 224
Target Start/End: Original strand, 22972837 - 22972869
Alignment:
| Q |
192 |
ctaaattgccttgggaaagaggtgggtaaactg |
224 |
Q |
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| T |
22972837 |
ctaaattgccttgggaaagaggtgggtaaactg |
22972869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 224
Target Start/End: Original strand, 38082683 - 38082715
Alignment:
| Q |
192 |
ctaaattgccttgggaaagaggtgggtaaactg |
224 |
Q |
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| T |
38082683 |
ctaaattgccttgggaaagaggtgggtaaactg |
38082715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 224
Target Start/End: Original strand, 65076 - 65108
Alignment:
| Q |
192 |
ctaaattgccttgggaaagaggtgggtaaactg |
224 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
65076 |
ctaaattgccttgggaaagaggtgggtaaactg |
65108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 224
Target Start/End: Complemental strand, 40908018 - 40907986
Alignment:
| Q |
192 |
ctaaattgccttgggaaagaggtgggtaaactg |
224 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
40908018 |
ctaaattgccttgggaaagaggtgggtaaactg |
40907986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0645 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0645
Description:
Target: scaffold0645; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 224
Target Start/End: Original strand, 2194 - 2226
Alignment:
| Q |
192 |
ctaaattgccttgggaaagaggtgggtaaactg |
224 |
Q |
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||||||| ||||||||||||||||||||||||| |
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| T |
2194 |
ctaaattaccttgggaaagaggtgggtaaactg |
2226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 224
Target Start/End: Complemental strand, 11560501 - 11560469
Alignment:
| Q |
192 |
ctaaattgccttgggaaagaggtgggtaaactg |
224 |
Q |
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|
||||||| ||||||||||||||||||||||||| |
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| T |
11560501 |
ctaaattaccttgggaaagaggtgggtaaactg |
11560469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 224
Target Start/End: Complemental strand, 29533092 - 29533060
Alignment:
| Q |
192 |
ctaaattgccttgggaaagaggtgggtaaactg |
224 |
Q |
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||||||| ||||||||||||||||||||||||| |
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| T |
29533092 |
ctaaattaccttgggaaagaggtgggtaaactg |
29533060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 224
Target Start/End: Complemental strand, 46044769 - 46044737
Alignment:
| Q |
192 |
ctaaattgccttgggaaagaggtgggtaaactg |
224 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
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| T |
46044769 |
ctaacttgccttgggaaagaggtgggtaaactg |
46044737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 224
Target Start/End: Original strand, 13432411 - 13432443
Alignment:
| Q |
192 |
ctaaattgccttgggaaagaggtgggtaaactg |
224 |
Q |
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|||||||| |||||||||||||||||||||||| |
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| T |
13432411 |
ctaaattgtcttgggaaagaggtgggtaaactg |
13432443 |
T |
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