View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13309_high_4 (Length: 237)
Name: NF13309_high_4
Description: NF13309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13309_high_4 |
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| [»] chr2 (6 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 146; Significance: 5e-77; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 72 - 237
Target Start/End: Original strand, 32812052 - 32812217
Alignment:
| Q |
72 |
ccaatctgaaaagttggattatattatccaaatacttgctcaattccaatctgccattacaagtaagatggatgaaaatgcaaagagtagagtgtatatt |
171 |
Q |
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| T |
32812052 |
ccaatctgaaaagttagattatattctccaaatacttgctcaattccaatctgccattacaagtaagatggatgaaaatggaaagagtagagtgtatatt |
32812151 |
T |
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| Q |
172 |
caaacatctcttagttctgtgcgtatcacaccatacttggaacaaatccgatgtaggaattcatac |
237 |
Q |
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| T |
32812152 |
caaacatctcttagttctttgagtatcacaccatacttggaacaaatccgatgtaggaattcatac |
32812217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 28 - 162
Target Start/End: Original strand, 28213164 - 28213297
Alignment:
| Q |
28 |
cataatttacacatcaaggctaataacagtcgttacaaaggatcccaatctgaaaagttggattatattatccaaatacttgctcaattccaatctgcca |
127 |
Q |
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| T |
28213164 |
cataatttactcatcatggctaataacaattgttacaaaggatcccaatctgaaaagttggatgagattctccaacaacttgctaatttccaatctgtca |
28213263 |
T |
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| Q |
128 |
ttacaagtaagatggatgaaaatgcaaagagtaga |
162 |
Q |
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| T |
28213264 |
tttcaagtaagatggatgaaattg-aaagagtaga |
28213297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 87 - 162
Target Start/End: Complemental strand, 32311430 - 32311355
Alignment:
| Q |
87 |
ggattatattatccaaatacttgctcaattccaatctgccattacaagtaagatggatgaaaatgcaaagagtaga |
162 |
Q |
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| T |
32311430 |
ggattatattctccaaatacttgctcaattccaatctgctaatacaagtaagatggatgaaaatggatagagtaga |
32311355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 87 - 162
Target Start/End: Original strand, 32789951 - 32790026
Alignment:
| Q |
87 |
ggattatattatccaaatacttgctcaattccaatctgccattacaagtaagatggatgaaaatgcaaagagtaga |
162 |
Q |
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| T |
32789951 |
ggattttattcttcaaatacttgctcaattccaatctgccaatacaagtaagatggatgaaaatggatagagtaga |
32790026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 32789910 - 32789954
Alignment:
| Q |
26 |
ctcataatttacacatcaaggctaataacagtcgttacaaaggat |
70 |
Q |
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| T |
32789910 |
ctcataatttactcatcaaggctaataccaatcgttacaaaggat |
32789954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 32311471 - 32311427
Alignment:
| Q |
26 |
ctcataatttacacatcaaggctaataacagtcgttacaaaggat |
70 |
Q |
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| T |
32311471 |
ctcataatttactcatcaaggcaaataacaaccgttacaaaggat |
32311427 |
T |
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