View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13309_low_1 (Length: 1164)
Name: NF13309_low_1
Description: NF13309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13309_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 139 - 612
Target Start/End: Original strand, 2017625 - 2018104
Alignment:
| Q |
139 |
cacaataagcgttcttaacaaaatgcatgcatgcaccatattaatctcgtcgaggcagatcatcatcatcaaccattgatttcgcggaatgtgaatggnn |
238 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2017625 |
cacaataagcgttcttaacaaaatgcatgcatgcaccatattaatcgcgtcgcggcagatcatcatcatcaaccattgatttcgcggaatgtgaatgaaa |
2017724 |
T |
|
| Q |
239 |
nnnnnnntgtgttggaactgagaatgtttttgttatattttgagatacaaaatgttaatatttgatgaacaaataatttcgtaatttagggatgaaatgt |
338 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
2017725 |
aaaaaaaagtgttggaactgagaatgtttttgttatattttgagatacaaaatgttaatatttgaggaagaaataatttcgtaatttagggatgaaatgt |
2017824 |
T |
|
| Q |
339 |
gagttttgtgacaaagtgttgtcattcaatgttgtctaaggcgga-------atatagccgatggttaaaaatcatctatacaaacacgccattgcagtc |
431 |
Q |
| |
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| T |
2017825 |
gagttttgtgacaaagtgttgtcaatcaatgttgtctatggcggatggcagaatatagccgatggttaaaaatcctctatacaaacacgccattgcagcc |
2017924 |
T |
|
| Q |
432 |
tatggcactgcgatgatgggcattccttcacaaatgcccgccatggtggtgccaagaccaccatttagtaacactgttgtcaaaaagcgggttatagtgg |
531 |
Q |
| |
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|||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2017925 |
tatgacactgcgatgatgggcattccttcccaaatgcccgccatggtggtgccacgaccaccatttagtaacactgttgtcaaaaagc-ggttatagtgg |
2018023 |
T |
|
| Q |
532 |
cgctatggcagtgcagcgtaaagggatttatgattgataacattgattttagatgatttatacatattcgtattatataat |
612 |
Q |
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| T |
2018024 |
cgctatgacagtgcagcgtaaagggatttgtgattgataacattgattttagatgatttatacatatttgtgttatataat |
2018104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 658 - 1142
Target Start/End: Original strand, 2018177 - 2018660
Alignment:
| Q |
658 |
attggctttgattgaattgttctttttctggtgcttcagatattttggatttgatggatttgatggattcgaaggattgggtcgctaatcagggtactga |
757 |
Q |
| |
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|||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2018177 |
attggctttgattggaatgttctttttctggtgcttcagatactttggatttgatggatt---------cgaaggattgggtcgctaatcagggtactga |
2018267 |
T |
|
| Q |
758 |
acccacaactga---------ttggagaacccaactgcaacctgatcaacgccaaagaattgtcaacaaaatgtaagattcagtgtcaatactgtatcac |
848 |
Q |
| |
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| T |
2018268 |
acccactactgacacagttgattggagaactcaactgcaacctgatcaacgccaaagaattgtcaataaaatgtaagattcagtatcaatattgtatca- |
2018366 |
T |
|
| Q |
849 |
tgaggttatttaaataatatttttacctgtcgttgcatttcaaaagaaaattaagaaatgaataaccaatccataacttgacaaccttcattgaagattt |
948 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
2018367 |
-gaggttatttaaatagtatttttacctgtcgttgcatttcaaaagaaaattaagaaatgaataaccgatccatatcttgacaaccttcattgaagattt |
2018465 |
T |
|
| Q |
949 |
cttttgtttgttctatagatgcaattctatccaagaatggaagaagtg-aagnnnnnnnnggaagcatgtctcgtggttctgttcaactttaaaaaatta |
1047 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||| |
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| T |
2018466 |
cttttgtttgttctatagatgcaattctatccaataatggaagaagtgaaagaaaaaaaatgaagcatgtctcgtggttctgttcaactttgaaaaatta |
2018565 |
T |
|
| Q |
1048 |
aagcatttaagcatacaacttcgcttaattctgttaaatttctgacaaataataagcaaatgcctctcattaattttcagatgaatgttgttcat |
1142 |
Q |
| |
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|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2018566 |
aagcatttaagcatacaacttcactgaattctgttaaatttctgacaaataataagcaaatgtctctcattaattttcagatgaatgttgttcat |
2018660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 626 - 1135
Target Start/End: Original strand, 2020705 - 2021209
Alignment:
| Q |
626 |
catatatatgtccctttcatgtttcttt-cagaattggcttt-gattgaattgttctttttctggtgcttcagatattttggatttgatggatttgatgg |
723 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||| ||| ||||| |||||||| | | |||||| |||| |
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| T |
2020705 |
catatatatgtccctttcatgtttcttttcagaattggcttttgattggattgttctatttttggtgtttcagatact---------aaggatttaatgg |
2020795 |
T |
|
| Q |
724 |
attcgaaggattgggtcgctaatcagggtactgaaccca---------caactgattggagaacccaactgcaacctgatcaacgccaaagaattgtcaa |
814 |
Q |
| |
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|||| | |||||||||||||||||||||||||| ||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
2020796 |
attccagtaattgggtcgctaatcagggtactgaatccattgccgacacaattgattggagaactcaactgcaacctgatcaacgccaaagaattgtcaa |
2020895 |
T |
|
| Q |
815 |
caaaatgtaagattcagtgtcaatactgtatcactgaggttatttaaataatatttttacctgtcgttgcatttcaaaagaaaattaagaaatgaataac |
914 |
Q |
| |
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|| |||||||||| ||||||||||||| ||| ||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
2020896 |
taatatgtaagatttggtgtcaatactgtgtca--gaggttatttaaatagtatttttacatgt---tgcatttcaaaagaaaattaagaaatgaataat |
2020990 |
T |
|
| Q |
915 |
caatccataacttgacaaccttcattgaagatttcttttgtttgttctatagatgcaattctatccaagaatggaagaagtgaagnnnnnnnnggaagca |
1014 |
Q |
| |
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|||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||| |
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| T |
2020991 |
caatccataaattgagaacctttattgaagatttcttttgtttgttctatagatgcaattctatccaagaatggaagatgtaaa--aaaatcatgaagca |
2021088 |
T |
|
| Q |
1015 |
tgtctcgtggttctgttcaactttaaaaaattaaagcatttaagcatacaacttcgcttaattctgttaaatttctgacaaataataagcaaatgcctct |
1114 |
Q |
| |
|
||||| ||||||||||||||| |||||||| || |||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||| |
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|
| T |
2021089 |
catctcgcggttctgttcaacttaaaaaaatttaatcatttaagcatacaacttcgctcaattctgttcaatttctgacaaataataggcaaatgcctct |
2021188 |
T |
|
| Q |
1115 |
cattaattttcagatgaatgt |
1135 |
Q |
| |
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| ||||||||||| ||||||| |
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| T |
2021189 |
cgttaattttcagttgaatgt |
2021209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 105; E-Value: 7e-52
Query Start/End: Original strand, 761 - 936
Target Start/End: Original strand, 1989175 - 1989351
Alignment:
| Q |
761 |
cacaactgattggagaacccaactgcaacctgatcaacgccaaagaattgtcaacaaaatgtaagattcagtgtcaatactgtatcactgaggttattta |
860 |
Q |
| |
|
||||| |||||||||||| ||| | ||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
1989175 |
cacaagtgattggagaactcaaatacaacctgatcaacgccatagaatcgtcaacaaaatgtaagattcagtgtcagtactttatcactgaggttattta |
1989274 |
T |
|
| Q |
861 |
aataatatttttacctgtcgttgcatttcaaaagaaaattaagaaatgaataaccaatccataac-ttgacaacctt |
936 |
Q |
| |
|
|||| ||| ||| |||| ||||||||| |||||||||||||||||| ||||| ||||||||||| ||||||||||| |
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| T |
1989275 |
aatagcattgttagctgttgttgcatttgaaaagaaaattaagaaattaataatcaatccataactttgacaacctt |
1989351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 94; E-Value: 3e-45
Query Start/End: Original strand, 628 - 843
Target Start/End: Original strand, 2035535 - 2035751
Alignment:
| Q |
628 |
tatatatgtccctttcatgtttcttt-cagaattggctttgattgaattgttctttttctggtgcttcagatattttggatttgatggatttgatggatt |
726 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| || | |||||||||||| |
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|
| T |
2035535 |
tatatatgtccctttcatgtttcttttcagaattggctttgattggattgttctttttctggtgcttcagatactt---------cgtatttgatggatt |
2035625 |
T |
|
| Q |
727 |
cgaaggattgggtcgctaatcagggtactgaacc---------cacaactgattggagaacccaactgcaacctgatcaacgccaaagaattgtcaacaa |
817 |
Q |
| |
|
| || |||||||| ||||||||||||| ||| | |||| |||||||||||| ||||||||||||||||||||||||||||||||||| || |
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|
| T |
2035626 |
ccaataattgggtccctaatcagggtacggaagccactgccgacacagttgattggagaactcaactgcaacctgatcaacgccaaagaattgtcaataa |
2035725 |
T |
|
| Q |
818 |
aatgtaagattcagtgtcaatactgt |
843 |
Q |
| |
|
||||||||||||||| |||||||||| |
|
|
| T |
2035726 |
aatgtaagattcagtttcaatactgt |
2035751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 77; E-Value: 4e-35
Query Start/End: Original strand, 56 - 144
Target Start/End: Original strand, 2017236 - 2017324
Alignment:
| Q |
56 |
agttgatcatcggccgccaagaactctccatccaggttattctctatcattttttcggattcaattccaccgcaaattgcggccacaat |
144 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
2017236 |
agttgatcatcggacgccaagaactctccatccaggttattgtctatcattttttcggattcaattccaccgcaaattgcgggcacaat |
2017324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 1024 - 1142
Target Start/End: Original strand, 1989427 - 1989546
Alignment:
| Q |
1024 |
gttctgttcaactttaaaaaattaaagcatttaagcatacaacttcgct--taattctgttaaatttctgacaaataataagcaaatgcctctcattaat |
1121 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||| |||||||||||||||| |||||| || ||||| ||| |||||||| ||||||| | |||||||| |
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| T |
1989427 |
gttctgtttaactttaaaaaattaaatcattttagcatacaacttcgctcaaaattctattcaatttttgagaaataataggcaaatg-caatcattaat |
1989525 |
T |
|
| Q |
1122 |
tttcagatgaatgttgttcat |
1142 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
1989526 |
tttcagatgaatgttgttcat |
1989546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 469 - 537
Target Start/End: Original strand, 2020460 - 2020527
Alignment:
| Q |
469 |
ccgccatggtggtgccaagaccaccatttagtaacactgttgtcaaaaagcgggttatagtggcgctat |
537 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||| |||| |
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|
| T |
2020460 |
ccgccatggtggtgccatgaccaccatttagtaacactgctgtcaaaaagc-ggttatagtggcactat |
2020527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 378 - 466
Target Start/End: Original strand, 2020346 - 2020434
Alignment:
| Q |
378 |
ggcggaatatagccgatggttaaaaatcatctatacaaacacgccattgcagtctatggcactgcgatgatgggcattccttcacaaat |
466 |
Q |
| |
|
|||||| |||||| |||||||||||||| ||||| ||||| |||||||||| ||||||||| | || || ||||||||||||||||| |
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|
| T |
2020346 |
ggcggagtatagctgatggttaaaaatccgctatataaacaagccattgcagcctatggcaccgtgacgacaggcattccttcacaaat |
2020434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 257 - 303
Target Start/End: Original strand, 2020115 - 2020161
Alignment:
| Q |
257 |
tgagaatgtttttgttatattttgagatacaaaatgttaatatttga |
303 |
Q |
| |
|
|||||||||||||||||||||||| | || ||||||||||||||||| |
|
|
| T |
2020115 |
tgagaatgtttttgttatattttggggtaaaaaatgttaatatttga |
2020161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 797 - 851
Target Start/End: Complemental strand, 44969406 - 44969352
Alignment:
| Q |
797 |
acgccaaagaattgtcaacaaaatgtaagattcagtgtcaatactgtatcactga |
851 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||| | | |||||||||||||| |
|
|
| T |
44969406 |
acgccaaagaattgtcaacaaaatgtaagctctagttttagtactgtatcactga |
44969352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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