View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13309_low_2 (Length: 838)
Name: NF13309_low_2
Description: NF13309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13309_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 528; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 17 - 639
Target Start/End: Original strand, 37176182 - 37176804
Alignment:
| Q |
17 |
actaatttggttgaactagtactaattttgtagaaattaatgtgtttgattccgcgataagaaaaatcgattttaaatgaattgattatgtaaaattgat |
116 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37176182 |
actaatttggttgaattagtactaattttgtagaaattaatgtgtttgattccgcgataagaaaaatcgattttaaatgaattgattatgtaaaattgat |
37176281 |
T |
|
| Q |
117 |
taaggttaaagtgaatggaatatgaggttacaaattctggtaaaattaattctagaaacaaaatcatatcagataacatcaaaacattttaaacactaag |
216 |
Q |
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|||||||||||||||| ||||||||||||||||||| ||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
37176282 |
taaggttaaagtgaatcgaatatgaggttacaaattatggtaaaatcaattctaaaaacaaaatcatatcggataacatcaaaacattttaaacactaag |
37176381 |
T |
|
| Q |
217 |
gaagaataacagaatggaaaatatttacttgtatgtaactttagccaccaaagattaaatagtaaaaattcatattctaaagtcaacaccaagaaataga |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37176382 |
gaagaataacagaatggaaaatatttacttgtatgtaactttagccaccaaagattaaatagtaaaaattcatattctaaagtcaacaccaagaaataga |
37176481 |
T |
|
| Q |
317 |
taaaaccttcaaattgatttgacatgcacaaaattgtcaattatggcaaccctttaaaagaattgagccatcgaaagaagaaaattgatagcatgaagca |
416 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
37176482 |
taaaaccttcaaattgatttgacatgcacaaaatggtcaattatggcaaccctttaaaagaattgagccatggaaagaagaaaattgatagcatgaagca |
37176581 |
T |
|
| Q |
417 |
taaaattgcaatcttaagttttgtgattctaagttgcaatgaaacaggaaacaattgttaaggtagagaaattaaattcataattctttcatatatcaaa |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37176582 |
taaaattgcaatcttaagttttgtgattctaagttgcaatgaaacaggaaacaattgttaaggtagagaaattaaattcataattctttcatatatcaaa |
37176681 |
T |
|
| Q |
517 |
aaattcaaaatcctatttaccttctgtacaagannnnnnnnnnnnnnnnnnnnnacaaatctaactaactaataactatttctaattaatatcacaaaga |
616 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37176682 |
aaattcaaaatcctatttaccttctgtacaagactctctctctctagtctctctacaaatctaactaactaataactatttctaattaatatcacaaaga |
37176781 |
T |
|
| Q |
617 |
aatgcaacctaaattatgctacc |
639 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
37176782 |
aatgcaacctaaattatgctacc |
37176804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 700 - 830
Target Start/End: Original strand, 37176865 - 37176995
Alignment:
| Q |
700 |
gtgactatactactgaacaatggattcttccaccaaaaacctgatgagaaatcaaactatctcttgttgtgtaaagggttggatcctgtaggcactttgc |
799 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37176865 |
gtgactatactactgaacaatggattcttccaccaaaaacctgatgagaaatcaaactatctcttgttgtgtaaagggttggatcctgtaggcactttgc |
37176964 |
T |
|
| Q |
800 |
gtttctgagacttgaattctttacctttgct |
830 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
37176965 |
gtttctgagacttgaattctttacctttgct |
37176995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 126
Target Start/End: Complemental strand, 11185251 - 11185218
Alignment:
| Q |
93 |
atgaattgattatgtaaaattgattaaggttaaa |
126 |
Q |
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| T |
11185251 |
atgaattgattatgtaaaattgattaagattaaa |
11185218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 755 - 830
Target Start/End: Complemental strand, 36207488 - 36207413
Alignment:
| Q |
755 |
actatctcttgttgtgtaaagggttggatcctgtaggcactttgcgtttctgagacttgaattctttacctttgct |
830 |
Q |
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||||| |||| |||||||||||||||| ||||||||| ||| | ||||||||||||| || ||||||||| |||| |
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| T |
36207488 |
actatttcttattgtgtaaagggttggctcctgtaggtactcttcgtttctgagactcaaactctttacctctgct |
36207413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 117
Target Start/End: Original strand, 39657973 - 39658019
Alignment:
| Q |
71 |
cgataagaaaaatcgattttaaatgaattgattatgtaaaattgatt |
117 |
Q |
| |
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|||||| |||||| |||||| ||| |||||||||||||||||||||| |
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| T |
39657973 |
cgataataaaaattgattttgaataaattgattatgtaaaattgatt |
39658019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 118
Target Start/End: Original strand, 18653450 - 18653496
Alignment:
| Q |
72 |
gataagaaaaatcgattttaaatgaattgattatgtaaaattgatta |
118 |
Q |
| |
|
|||||||||||| |||||| || |||||||||||||||||||||||| |
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|
| T |
18653450 |
gataagaaaaattgattttgaaagaattgattatgtaaaattgatta |
18653496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 117
Target Start/End: Original strand, 403962 - 403994
Alignment:
| Q |
85 |
gattttaaatgaattgattatgtaaaattgatt |
117 |
Q |
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|
||||||||||||||||||||||||||||||||| |
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| T |
403962 |
gattttaaatgaattgattatgtaaaattgatt |
403994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 127
Target Start/End: Complemental strand, 23104735 - 23104694
Alignment:
| Q |
86 |
attttaaatgaattgattatgtaaaattgattaaggttaaag |
127 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| |
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| T |
23104735 |
attttaaatgaattgattatgtaaaattgattctggttaaag |
23104694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 117
Target Start/End: Original strand, 24364102 - 24364141
Alignment:
| Q |
78 |
aaaaatcgattttaaatgaattgattatgtaaaattgatt |
117 |
Q |
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|||||| |||||| |||||||||||||||||||||||||| |
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|
| T |
24364102 |
aaaaattgattttgaatgaattgattatgtaaaattgatt |
24364141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 117
Target Start/End: Complemental strand, 5219286 - 5219255
Alignment:
| Q |
86 |
attttaaatgaattgattatgtaaaattgatt |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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|
| T |
5219286 |
attttaaatgaattgattatgtaaaattgatt |
5219255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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