View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13309_low_3 (Length: 519)
Name: NF13309_low_3
Description: NF13309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13309_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 35 - 501
Target Start/End: Original strand, 7082990 - 7083452
Alignment:
| Q |
35 |
aaacataatcataaaccttagctagaacctagatttatttgtagtagtgttgttttgcaatacaatgtaattatgaactctgtagagaggttaaaacatg |
134 |
Q |
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| T |
7082990 |
aaacataatcataaaccttagctagaacctagatttatttgtagtagtgttgttttgcaatacaatgtaattatgaactctgtagagaggttaaaacatg |
7083089 |
T |
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| Q |
135 |
ttagttaattaattaattagagctcactaggttaaacagaggaaaacagatacataaaagaattgtaaacaaatttctaggacaaatttgctaattcata |
234 |
Q |
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| T |
7083090 |
ttagttaattaattaattagagctcactaggttaaa-acaggaaaacagatacatataagaattgtaaacaaatttctaggacaaatttgctaattcata |
7083188 |
T |
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| Q |
235 |
aaaatcataggctaatttgatgaataagtacaatttgagagacaaatttgtctattctcaattcacagaaagaagaagnnnnnnnnncgtaggcgtgccc |
334 |
Q |
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| T |
7083189 |
aaaatcataggctaatttgatgaataagtacaatttgagagacaaatttgtctattctcaattcacagaaagaagaa----aaaaaacgtaggcgtgccc |
7083284 |
T |
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| Q |
335 |
aaaatatcatccaatatttgaagtatgaacaacagttaattattttgcagatgaacacatgtatgacgaaaccaaatggaaaaatcc-aaaagatatcag |
433 |
Q |
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| T |
7083285 |
aaaatatcatccaatatttgaagtatgaacaacagttaattattttgcagatgaacacatgtatgaagaaaccaaatggaaaaatccaaaaagatatcag |
7083384 |
T |
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| Q |
434 |
gcgtgacatgtaaataattagaatatccttgaattgtggatcccgtacgtgaaatgaaatgcactaac |
501 |
Q |
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| T |
7083385 |
gcgtgacatgtaaataattagaatatccttgaattgtggatcccgtacgtgaaatgaaatgcactaac |
7083452 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 429 - 498
Target Start/End: Complemental strand, 49017842 - 49017771
Alignment:
| Q |
429 |
atcaggcgtgacatgtaaataattagaatatccttgaattgtgga--tcccgtacgtgaaatgaaatgcact |
498 |
Q |
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| T |
49017842 |
atcaggcgtggcatgtaaataatgagaatatccttgaatgagggaggccccgtacgtgaaatgaaaagcact |
49017771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 270
Target Start/End: Original strand, 12766085 - 12766133
Alignment:
| Q |
222 |
ttgctaattcataaaaatcataggctaatttgatgaataagtacaattt |
270 |
Q |
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| T |
12766085 |
ttgctaattcataaaaatcagagactaatttgatcaataattacaattt |
12766133 |
T |
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