View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13309_low_4 (Length: 353)

Name: NF13309_low_4
Description: NF13309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13309_low_4
NF13309_low_4
[»] chr4 (3 HSPs)
chr4 (17-336)||(48716682-48717000)
chr4 (38-84)||(48703983-48704029)
chr4 (296-336)||(41306642-41306682)
[»] chr3 (2 HSPs)
chr3 (294-336)||(17547049-17547091)
chr3 (296-336)||(29081693-29081733)
[»] chr7 (2 HSPs)
chr7 (299-339)||(16648820-16648860)
chr7 (299-339)||(17623181-17623221)
[»] scaffold0110 (1 HSPs)
scaffold0110 (296-335)||(26524-26563)
[»] chr2 (1 HSPs)
chr2 (294-336)||(37782793-37782835)
[»] chr5 (1 HSPs)
chr5 (299-340)||(34394692-34394733)
[»] scaffold1315 (1 HSPs)
scaffold1315 (296-336)||(1837-1877)
[»] scaffold1293 (1 HSPs)
scaffold1293 (296-336)||(194-234)
[»] chr6 (2 HSPs)
chr6 (299-339)||(15057106-15057146)
chr6 (296-336)||(16193823-16193863)
[»] chr1 (1 HSPs)
chr1 (296-336)||(44291142-44291182)


Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 17 - 336
Target Start/End: Original strand, 48716682 - 48717000
Alignment:
Q  17 atgaaatcttaaaggtctattttaaggattcatttgctgcaatttgatttcattgtattctgaattatatttgggtttttgtctaatgtgcataaataaa 116  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  48716682 atgaaatcttaaaggtctattttaaggattcatttgttgcaatttgatttcat-gtattctgaattatatttgggtttttgtctaatgtgcataactaaa 48716780  T
Q  117 acaatactatatcatatataagtttattttctaccattgcatcaataaacttcgttatatcacttaataatataacttagcaatccattaaaaaacaatc 216  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  48716781 acaatactatatcatatataagtttattttctaccatggcatcaataaacttcgttatatcatttaataatataacttagcaatccattaaaaaacaatc 48716880  T
Q  217 ttgtgagaggtgcaagatatatgtgccgtgtgcaccatacaccataaactttgggttgcacttgagtgacatataatatttggtgacattggtcaaccat 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||    
T  48716881 ttgtgagaggtgcaagatatatgtgccgtgtgcaccatacaccataaactttgggttgcacttgagtgacatatagcacttggtgacattggtcaaccat 48716980  T
Q  317 aatatcacaagtgtataaaa 336  Q
    ||||||||||| ||||||||    
T  48716981 aatatcacaagcgtataaaa 48717000  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 84
Target Start/End: Original strand, 48703983 - 48704029
Alignment:
Q  38 ttaaggattcatttgctgcaatttgatttcattgtattctgaattat 84  Q
    |||||||||||| || | |||||||||||| ||||||||||||||||    
T  48703983 ttaaggattcatatgttacaatttgatttctttgtattctgaattat 48704029  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 336
Target Start/End: Original strand, 41306642 - 41306682
Alignment:
Q  296 ttggtgacattggtcaaccataatatcacaagtgtataaaa 336  Q
    ||||||| |||||||||||||||| ||||||||||| ||||    
T  41306642 ttggtgatattggtcaaccataatgtcacaagtgtacaaaa 41306682  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 294 - 336
Target Start/End: Complemental strand, 17547091 - 17547049
Alignment:
Q  294 atttggtgacattggtcaaccataatatcacaagtgtataaaa 336  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  17547091 atttggtgacattggtcaaccataatgtcacaagtgtataaaa 17547049  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 336
Target Start/End: Complemental strand, 29081733 - 29081693
Alignment:
Q  296 ttggtgacattggtcaaccataatatcacaagtgtataaaa 336  Q
    |||||||||||||||||||| ||| ||||||||||| ||||    
T  29081733 ttggtgacattggtcaaccacaatgtcacaagtgtacaaaa 29081693  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 339
Target Start/End: Original strand, 16648820 - 16648860
Alignment:
Q  299 gtgacattggtcaaccataatatcacaagtgtataaaatga 339  Q
    ||||||||||||||||| ||||||||||| |||||||||||    
T  16648820 gtgacattggtcaaccacaatatcacaagcgtataaaatga 16648860  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 339
Target Start/End: Original strand, 17623181 - 17623221
Alignment:
Q  299 gtgacattggtcaaccataatatcacaagtgtataaaatga 339  Q
    ||||||||||||||||| ||||||||||| |||||||||||    
T  17623181 gtgacattggtcaaccacaatatcacaagcgtataaaatga 17623221  T

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Target: scaffold0110 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 335
Target Start/End: Original strand, 26524 - 26563
Alignment:
Q  296 ttggtgacattggtcaaccataatatcacaagtgtataaa 335  Q
    ||||||||||||||||| || |||||||||||||||||||    
T  26524 ttggtgacattggtcaaacacaatatcacaagtgtataaa 26563  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 336
Target Start/End: Original strand, 37782793 - 37782835
Alignment:
Q  294 atttggtgacattggtcaaccataatatcacaagtgtataaaa 336  Q
    ||||||| |||||| ||||||||||||| ||||||||||||||    
T  37782793 atttggtaacattgatcaaccataatattacaagtgtataaaa 37782835  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 340
Target Start/End: Original strand, 34394692 - 34394733
Alignment:
Q  299 gtgacattggtcaaccataatatcacaagtgtataaaatgat 340  Q
    ||||||||||||||||| ||| ||||||||||| ||||||||    
T  34394692 gtgacattggtcaaccacaatgtcacaagtgtacaaaatgat 34394733  T

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Target: scaffold1315 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1315
Description:

Target: scaffold1315; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 336
Target Start/End: Original strand, 1837 - 1877
Alignment:
Q  296 ttggtgacattggtcaaccataatatcacaagtgtataaaa 336  Q
    |||||||||||| ||||||| ||||||||||||||| ||||    
T  1837 ttggtgacattgatcaaccacaatatcacaagtgtacaaaa 1877  T

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Target: scaffold1293 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1293
Description:

Target: scaffold1293; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 336
Target Start/End: Complemental strand, 234 - 194
Alignment:
Q  296 ttggtgacattggtcaaccataatatcacaagtgtataaaa 336  Q
    |||||||||||| ||||||| ||||||||||||||| ||||    
T  234 ttggtgacattgatcaaccacaatatcacaagtgtacaaaa 194  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 339
Target Start/End: Complemental strand, 15057146 - 15057106
Alignment:
Q  299 gtgacattggtcaaccataatatcacaagtgtataaaatga 339  Q
    |||||||||| |||||| ||||||||||||||| |||||||    
T  15057146 gtgacattggccaaccaaaatatcacaagtgtacaaaatga 15057106  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 336
Target Start/End: Complemental strand, 16193863 - 16193823
Alignment:
Q  296 ttggtgacattggtcaaccataatatcacaagtgtataaaa 336  Q
    |||||||||||||||||||| ||| ||||||||||| ||||    
T  16193863 ttggtgacattggtcaaccacaatgtcacaagtgtacaaaa 16193823  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 336
Target Start/End: Complemental strand, 44291182 - 44291142
Alignment:
Q  296 ttggtgacattggtcaaccataatatcacaagtgtataaaa 336  Q
    |||||||||||||||||||| ||| ||||||||||| ||||    
T  44291182 ttggtgacattggtcaaccacaatgtcacaagtgtacaaaa 44291142  T

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