View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13310_high_10 (Length: 358)
Name: NF13310_high_10
Description: NF13310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13310_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 16 - 342
Target Start/End: Original strand, 34052961 - 34053287
Alignment:
| Q |
16 |
gaagatgagaagaaatcaattggtgtatcactctcaaaagatttaatggcggtcgccggagaagcactcaaaaccaacatcacaacacttggtccattgg |
115 |
Q |
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| T |
34052961 |
gaagatgagaagaaatcaattggtgtatcactctcaaaagatttaatggcggttgccggagaagcactgaaaaccaacatcacaacacttggtccattgg |
34053060 |
T |
|
| Q |
116 |
tacttcctatgtcagaacagcttctgtttttcgcaactttggttgcaagaaaagctttcaagatgaagataaaaccctacattcctgattttaaattagc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34053061 |
tacttcctatgtcagaacagcttctgtttttcgcaactttggttgcaagaaaagctttcaagatgaagataaaaccctacattcctgattttaaattagc |
34053160 |
T |
|
| Q |
216 |
ttttgagcatttttgtattcatgctggtggaagagctgttttggatgaattagagaaaaatcttgaccttagtgattggcatatggaaccatcaagaatg |
315 |
Q |
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| T |
34053161 |
ttttgagcatttttgtattcatgctggtggaagagctgttttggatgaattagagaaaaatcttgaccttagtgattggcatatggaaccatcaagaatg |
34053260 |
T |
|
| Q |
316 |
acactaaatagatttggtaacacttct |
342 |
Q |
| |
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|||||||||||||||||||| |||||| |
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| T |
34053261 |
acactaaatagatttggtaatacttct |
34053287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 37 - 342
Target Start/End: Original strand, 15239283 - 15239588
Alignment:
| Q |
37 |
ggtgtatcactctcaaaagatttaatggcggtcgccggagaagcactcaaaaccaacatcacaacacttggtccattggtacttcctatgtcagaacagc |
136 |
Q |
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| T |
15239283 |
ggtgtatcactctcaaaagacctaatggctgttgccggagaagcactcaaaacaaacatcacaacattaggaccattagtcctacctatgtcggaacagc |
15239382 |
T |
|
| Q |
137 |
ttctgtttttcgcaactttggttgcaagaaaagctttcaagatgaagataaaaccctacattcctgattttaaattagcttttgagcatttttgtattca |
236 |
Q |
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| | ||||||| || |||||||| ||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15239383 |
tcttatttttcgggacattggttgcgcgaaaaatcttcaagatgaaaataaaaccatacattcctgattttaaattagcttttgagcatttttgtattca |
15239482 |
T |
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| Q |
237 |
tgctggtggaagagctgttttggatgaattagagaaaaatcttgaccttagtgattggcatatggaaccatcaagaatgacactaaatagatttggtaac |
336 |
Q |
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||||||||||||||||||||||||||| || |||||||||||||| | |||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
15239483 |
tgctggtggaagagctgttttggatgagttggagaaaaatcttgatttaagtgattggcatatggaaccatcaaggatgacactgaatagatttggtaac |
15239582 |
T |
|
| Q |
337 |
acttct |
342 |
Q |
| |
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|||||| |
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|
| T |
15239583 |
acttct |
15239588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 245
Target Start/End: Complemental strand, 50087371 - 50087325
Alignment:
| Q |
199 |
cctgattttaaattagcttttgagcatttttgtattcatgctggtgg |
245 |
Q |
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|||||||||||| ||||||||| ||||||||||| ||||||||||| |
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| T |
50087371 |
cctgattttaaacaagcttttgaacatttttgtatacatgctggtgg |
50087325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 202 - 341
Target Start/End: Complemental strand, 49041356 - 49041217
Alignment:
| Q |
202 |
gattttaaattagcttttgagcatttttgtattcatgctggtggaagagctgttttggatgaattagagaaaaatcttgaccttagtgattggcatatgg |
301 |
Q |
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||||| |||||||||||||| ||||| ||||||||||||||||||||||||||| | ||||| || |||| |||||| | || ||||| |||||||||| |
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| T |
49041356 |
gatttcaaattagcttttgaacatttctgtattcatgctggtggaagagctgttcttgatgagttgcagaagaatcttcaactcagtgagtggcatatgg |
49041257 |
T |
|
| Q |
302 |
aaccatcaagaatgacactaaatagatttggtaacacttc |
341 |
Q |
| |
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|||| || | ||||| || |||||||||| |||||||| |
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| T |
49041256 |
aaccgtctcggatgactctgcatagatttggaaacacttc |
49041217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 172 - 275
Target Start/End: Original strand, 31333824 - 31333927
Alignment:
| Q |
172 |
ttcaagatgaagataaaaccctacattcctgattttaaattagcttttgagcatttttgtattcatgctggtggaagagctgttttggatgaattagaga |
271 |
Q |
| |
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|||||||||||||| || || || ||||||||||| || ||||||| || ||||| || |||||||| ||||||||||||||||| ||||| |||||| |
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| T |
31333824 |
ttcaagatgaagatcaagccttatattcctgatttcaagctagctttcgaacatttctgcattcatgccggtggaagagctgttttagatgagctagaga |
31333923 |
T |
|
| Q |
272 |
aaaa |
275 |
Q |
| |
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|||| |
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| T |
31333924 |
aaaa |
31333927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 171 - 275
Target Start/End: Original strand, 46572619 - 46572723
Alignment:
| Q |
171 |
tttcaagatgaagataaaaccctacattcctgattttaaattagcttttgagcatttttgtattcatgctggtggaagagctgttttggatgaattagag |
270 |
Q |
| |
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||||||||||||||||||||| || ||||||||||| || |||||||||| |||||||| || ||||| || || |||||||||||||||||| | ||| |
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| T |
46572619 |
tttcaagatgaagataaaaccttatattcctgatttcaagctagcttttgaacatttttgcatccatgccggaggtagagctgttttggatgaactggag |
46572718 |
T |
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| Q |
271 |
aaaaa |
275 |
Q |
| |
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||||| |
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| T |
46572719 |
aaaaa |
46572723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 254
Target Start/End: Original strand, 26453327 - 26453382
Alignment:
| Q |
199 |
cctgattttaaattagcttttgagcatttttgtattcatgctggtggaagagctgt |
254 |
Q |
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||||||||||| | |||||||||||||||||||||||||||||||| |||||||| |
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| T |
26453327 |
cctgattttaagcttgcttttgagcatttttgtattcatgctggtggtagagctgt |
26453382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 275
Target Start/End: Complemental strand, 23499364 - 23499261
Alignment:
| Q |
172 |
ttcaagatgaagataaaaccctacattcctgattttaaattagcttttgagcatttttgtattcatgctggtggaagagctgttttggatgaattagaga |
271 |
Q |
| |
|
|||||||||||||| || || || ||||| ||||| || ||||||| || ||||| || |||||||| ||||||||||||||||| ||||| |||||| |
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| T |
23499364 |
ttcaagatgaagatcaagccttatattccagatttcaagctagctttcgaacatttctgcattcatgccggtggaagagctgttttagatgagctagaga |
23499265 |
T |
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| Q |
272 |
aaaa |
275 |
Q |
| |
|
|||| |
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|
| T |
23499264 |
aaaa |
23499261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 246
Target Start/End: Complemental strand, 23271635 - 23271585
Alignment:
| Q |
196 |
attcctgattttaaattagcttttgagcatttttgtattcatgctggtgga |
246 |
Q |
| |
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||||||||||| ||| ||| |||||||||||||||||||||||||||||| |
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| T |
23271635 |
attcctgatttcaaacaagcgtttgagcatttttgtattcatgctggtgga |
23271585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 27776703 - 27776655
Alignment:
| Q |
199 |
cctgattttaaattagcttttgagcatttttgtattcatgctggtggaa |
247 |
Q |
| |
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||||||||||| || |||||||||||||||||||||| ||||||||| |
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| T |
27776703 |
cctgattttaagctatgttttgagcatttttgtattcatactggtggaa |
27776655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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