View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13310_high_12 (Length: 325)
Name: NF13310_high_12
Description: NF13310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13310_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 16 - 315
Target Start/End: Complemental strand, 5075221 - 5074921
Alignment:
| Q |
16 |
aaatctactattattaagtctgactatgtttaatgtgtatgtctatctaatgaatgaaacattactatgttattatatctatgttacttatatttacctc |
115 |
Q |
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| T |
5075221 |
aaatctactattattaagtctgactatgtttaatgtgtatgtctatctaatgaatgaaacattattatgttattatatctatgttacttatatttac-tc |
5075123 |
T |
|
| Q |
116 |
aagtttttacattacaagacatgcttttgttatgtatatacactcttcttttgttcataatttgtatcttaataataagagttttaatttgaaatacagt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5075122 |
aagtttttacattacaagacatgcttttgttatgtatatacactcttcttttgttcataatttgtatcttaataataagagttttaatttgaaatacagt |
5075023 |
T |
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| Q |
216 |
ttatgctgaattaagaaaacaatggaa---actaacaatcaatagaaaaatacacaaaacatgtgatttaaggccagacaaatttcacgcacaattacct |
312 |
Q |
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||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
5075022 |
tta-gctgaattaagaaaacaatggaaactactaacaatcaatagaaaaatacacaaaacatgtgatttaaggccagacaaatttcacgcacaattacat |
5074924 |
T |
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| Q |
313 |
ttg |
315 |
Q |
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||| |
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| T |
5074923 |
ttg |
5074921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 254
Target Start/End: Complemental strand, 5088077 - 5088009
Alignment:
| Q |
186 |
aataataagagttttaatttgaaatacagtttatgctgaattaagaaaacaatggaaactaacaatcaa |
254 |
Q |
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|||||| | |||||||||| |||||||||||||||| ||||| | ||| ||||| ||||| |||||||| |
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| T |
5088077 |
aataattaaagttttaattagaaatacagtttatgcagaattgaaaaaccaatgaaaacttacaatcaa |
5088009 |
T |
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