View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13310_high_19 (Length: 251)
Name: NF13310_high_19
Description: NF13310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13310_high_19 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 78 - 244
Target Start/End: Original strand, 38635854 - 38636020
Alignment:
| Q |
78 |
gataaacatgaggtaataatttaatttcaattgtaaaattatcaaatcagcaccttgtgaggcgtttggtgacattagcattagcaccaagatctgctgg |
177 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38635854 |
gataaacatgaggtaataatttaatttcaattgtaaaattatcaaatcagcaccttgtgaggcgtttggtgacattagcattagcaccaagatctgctgg |
38635953 |
T |
|
| Q |
178 |
gttgatcacaagattttggatatcttgaagtacttttctgtttcttccttcaacccccattttcttc |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
38635954 |
gttgatcacaagattttggatatcttgaagtacttttctgtttcttccttcaacccccatattcttc |
38636020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 38635782 - 38635818
Alignment:
| Q |
1 |
tgagcaagagccgctaactgagtcctgtaacaacaac |
37 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
38635782 |
tgagcaagagccgctaactgagccctgcaacaacaac |
38635818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University