View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13310_high_4 (Length: 558)
Name: NF13310_high_4
Description: NF13310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13310_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 19 - 542
Target Start/End: Complemental strand, 43919075 - 43918552
Alignment:
| Q |
19 |
atatatgtaactgagaatcttctagaatcttagaacttactcagaatcttcattcaaaatcaaatgacacgctctcattttcatatatagacaggtaaag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43919075 |
atatatgtaactgagaatcttctagaatcttagaacttactcagaatcttcattcaaaatcaaatgacacgctctcattttcatatatagacaggtaaag |
43918976 |
T |
|
| Q |
119 |
tattcacaaaaagaaaagttctaaatagaaatctgtttctctcagttgcttattttcttatcagtttattcaaggaagatttcttaccatccttcctttg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43918975 |
tattcacaaaaagaaaagttctaaatagaaatctgtttctctcagttgcttattttcttatcagtttattcaaggaagatttcttaccatccttcctttg |
43918876 |
T |
|
| Q |
219 |
gtatcccttctttgtcatgaagtcacaatctgcctcatgatctgtaaccctgacattggttaaatatcataatcttattcaacatggcaaacttgagagc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43918875 |
gtatcccttctttgtcatgaagtcacaatctgcctcatgatctgtaaccctgacattggttaaatatcataatcttattcaacatggcaaacttgagagc |
43918776 |
T |
|
| Q |
319 |
aaaaatattgcaaagagcttcatataaaagcgtagtttaaatgacttatttacatctctgttctggaaaagtttattattgaaaatccagctaaattttg |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43918775 |
aaaaatattgcaaagagcttcatataaaagcgtagtttaaatgatttatttacatctctgttctggaaaagtttattattgaaaatccagctaaattttg |
43918676 |
T |
|
| Q |
419 |
tttgaaaatttaacattcccatgctcacaacacctgacaagcctcccaaaaatcaacaatattctcattaccagaccaatttactttataatattgtgca |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43918675 |
tttgaaaatttaacattcccatgctcacaacacctgacaagcctcccaaaaatcaacaatattctcattaccagaccaatttactttataatattgtgca |
43918576 |
T |
|
| Q |
519 |
tcatgggaacctcttattggatga |
542 |
Q |
| |
|
| |||||||||||||||||||||| |
|
|
| T |
43918575 |
taatgggaacctcttattggatga |
43918552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University