View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13310_high_7 (Length: 434)

Name: NF13310_high_7
Description: NF13310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13310_high_7
NF13310_high_7
[»] chr7 (10 HSPs)
chr7 (6-412)||(8250887-8251295)
chr7 (15-384)||(16175352-16175723)
chr7 (15-120)||(17150345-17150451)
chr7 (201-324)||(14266858-14266981)
chr7 (150-287)||(13488332-13488469)
chr7 (218-286)||(6460998-6461066)
chr7 (218-322)||(17492367-17492470)
chr7 (218-322)||(17560744-17560847)
chr7 (265-397)||(26427498-26427632)
chr7 (218-278)||(20147702-20147762)
[»] chr4 (10 HSPs)
chr4 (144-330)||(11923131-11923315)
chr4 (202-302)||(20847874-20847974)
chr4 (26-162)||(11093662-11093799)
chr4 (199-296)||(13933748-13933844)
chr4 (94-297)||(17542480-17542683)
chr4 (116-259)||(9269518-9269660)
chr4 (116-258)||(9220903-9221044)
chr4 (274-322)||(12407447-12407495)
chr4 (218-286)||(10115457-10115525)
chr4 (226-286)||(16028425-16028485)
[»] chr3 (7 HSPs)
chr3 (94-300)||(8900427-8900632)
chr3 (69-161)||(9637008-9637101)
chr3 (226-291)||(14305961-14306026)
chr3 (226-304)||(19977897-19977975)
chr3 (226-320)||(21093740-21093834)
chr3 (197-333)||(10711101-10711238)
chr3 (26-90)||(19977714-19977778)
[»] chr6 (5 HSPs)
chr6 (94-295)||(14486642-14486843)
chr6 (139-322)||(23089731-23089913)
chr6 (200-322)||(21746590-21746712)
chr6 (200-330)||(14633925-14634055)
chr6 (220-322)||(12465497-12465599)
[»] chr2 (3 HSPs)
chr2 (132-321)||(23153816-23154005)
chr2 (132-321)||(23565073-23565262)
chr2 (138-320)||(39668284-39668465)
[»] scaffold1924 (1 HSPs)
scaffold1924 (186-300)||(272-386)
[»] chr5 (2 HSPs)
chr5 (193-297)||(30190269-30190373)
chr5 (207-251)||(22806895-22806939)
[»] scaffold0126 (1 HSPs)
scaffold0126 (205-302)||(33972-34069)
[»] scaffold0111 (1 HSPs)
scaffold0111 (94-159)||(35944-36009)
[»] scaffold0115 (1 HSPs)
scaffold0115 (217-259)||(40612-40654)
[»] scaffold0086 (1 HSPs)
scaffold0086 (265-333)||(10607-10675)
[»] chr8 (1 HSPs)
chr8 (204-295)||(24369923-24370014)
[»] scaffold0135 (1 HSPs)
scaffold0135 (116-258)||(31554-31695)
[»] scaffold0171 (1 HSPs)
scaffold0171 (138-251)||(3733-3846)
[»] scaffold0123 (1 HSPs)
scaffold0123 (264-296)||(34423-34455)


Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 6 - 412
Target Start/End: Complemental strand, 8251295 - 8250887
Alignment:
6 gtggagaagcataggtgatcattaggagtgaaattagttttgaaagaagttaaaaatgagacgaactttgagtttttaagaaaattaag-aaccttgtaa 104  Q
    ||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
8251295 gtggataaacataggtgatcattaggagtgaaattggttttgaaagaagttaaaaatgagacgaaatttgagtttttaagaaaattaaggaaccttgtaa 8251196  T
105 aaccaaattgctatgaatggttaactaagatggtagataatatgtagggatgtttttatactgtgtaatagcttggaatcatactttggttgaggaaaat 204  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
8251195 aaccaaaatgctatgagtggttaactaagatggtagataatatgtagggatgtttttatactatgtaatagcttggaatcatactttggttgaggaaaat 8251096  T
205 tgaaaataggcgattttgtgcaaatagacaaactttgtcaaaatgagcttttatggtcacataacttgtaaatggctttgtaaacatgataacatggtaa 304  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
8251095 taaaaataggcgattttgtgcaaatagacaaactttgtcaaaatgagcttttatggtcacataacttgtaaatggctttgtaaacatgataacatggtaa 8250996  T
305 cataataatgaatcaatgttt-attggtgtattaaatggtttctatcatgatgtgctggaatattcctttttatgcgattttgtaatttatgaaacagtc 403  Q
      ||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||   |||||| |||||||||||| ||    
8250995 attaagaatgaatcaatgtttgattggtgtattaaatggtttctatcatgatgtggtggaatattcatttttatgttgttttgtgatttatgaaacaatc 8250896  T
404 tgtttcttt 412  Q
    |||||||||    
8250895 tgtttcttt 8250887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 15 - 384
Target Start/End: Complemental strand, 16175723 - 16175352
Alignment:
15 cataggtgatcattaggagtgaaattagttttgaaagaagttaaaaatgagacgaactttgagtttttaagaaaattaag-aaccttgtaaaaccaaatt 113  Q
    ||||||||||||||| || |||| ||  |||||||| ||||| |||||||||| ||||||||| |||| | |||||| || ||| |||| |||||||| |    
16175723 cataggtgatcattaagattgaatttcattttgaaataagtttaaaatgagacaaactttgaggttttgataaaattgaggaactttgtgaaaccaaaat 16175624  T
114 gctatgaatggttaactaagatggtagataatatgtagggatgtttttatactgtgtaatagcttggaatcatactttggttgaggaaaattgaaaatag 213  Q
    |||||||||| ||||||  |||||||||| ||||||||||||||||||||| | ||||| | ||||||||||||||||  ||| | |||||||||||||     
16175623 gctatgaatgattaacttcgatggtagatgatatgtagggatgtttttatattatgtaagaacttggaatcatacttttattgggaaaaattgaaaatat 16175524  T
214 gcgattttgtgcaaatagacaaactttgtcaaaatgagcttttatggtcacataacttgtaaatggctttgtaaacatgataacatggtaacataataat 313  Q
    ||||||||||| |||||||| ||| ||| ||||||||||||||||| ||  ||||| |||||||| |||||||||||||||||||||||||| ||| |||    
16175523 gcgattttgtgaaaatagacgaacgttgccaaaatgagcttttatgatcctataacatgtaaatgactttgtaaacatgataacatggtaacttaagaat 16175424  T
314 gaatcaatgttt-attggtgtattaaatggtttctatcatgatgtgctggaatattcctttttatgcgattt 384  Q
    |||||||||||| |||||||||||||||| || ||||||||||||| || ||| ||| ||| ||| ||||||    
16175423 gaatcaatgtttgattggtgtattaaatgtttgctatcatgatgtggtgaaattttcgtttatatacgattt 16175352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 15 - 120
Target Start/End: Original strand, 17150345 - 17150451
Alignment:
15 cataggtgatcattaggagtgaaattagttttgaaagaagttaaaaatgagacgaactttgagtttttaagaaaatta-agaaccttgtaaaaccaaatt 113  Q
    |||||||| ||||||||| |||| || ||||||||| ||||||||||||||| ||||||||||||||||||||||| |  ||||||||| |||||||| |    
17150345 cataggtgttcattaggattgaatttggttttgaaacaagttaaaaatgagatgaactttgagtttttaagaaaataagtgaaccttgtgaaaccaaaat 17150444  T
114 gctatga 120  Q
    |||||||    
17150445 gctatga 17150451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 201 - 324
Target Start/End: Original strand, 14266858 - 14266981
Alignment:
201 aaattgaaaataggcgattttgtgcaaatagacaaactttgtcaaaatgagcttttatggtcacataacttgtaaatggctttgtaaacatgataacatg 300  Q
    |||||||||||| || |||||||| |||||||| ||||||||||||||||||||||||| ||  ||| ||||| | ||| ||| ||  |||||||| |||    
14266858 aaattgaaaataagcaattttgtgaaaatagacgaactttgtcaaaatgagcttttatgatcttataccttgtgattggttttttattcatgataatatg 14266957  T
301 gtaacataataatgaatcaatgtt 324  Q
     ||| |||  ||||||||||||||    
14266958 ataaaatacgaatgaatcaatgtt 14266981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 150 - 287
Target Start/End: Complemental strand, 13488469 - 13488332
Alignment:
150 agggatgtttttatactgtgtaatagcttggaatcatactttggttgaggaaaattgaaaataggcgattttgtgcaaatagacaaactttgtcaaaatg 249  Q
    ||||||||||| ||  | ||||  ||| |||||| ||||||| |||||  ||||||||||||   |||||||||| |||||||| |||||||||||||||    
13488469 agggatgttttcatggtatgtaggagcatggaattatacttttgttgaataaaattgaaaatgaacgattttgtgaaaatagacgaactttgtcaaaatg 13488370  T
250 agcttttatggtcacataacttgtaaatggctttgtaa 287  Q
    || || |||| ||  |||||||| ||||| ||||||||    
13488369 aggttctatgatcggataacttgcaaatgactttgtaa 13488332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 218 - 286
Target Start/End: Original strand, 6460998 - 6461066
Alignment:
218 ttttgtgcaaatagacaaactttgtcaaaatgagcttttatggtcacataacttgtaaatggctttgta 286  Q
    ||||||| ||||| || ||||||||||||||||| ||||||||||  |||||||| |||||||||||||    
6460998 ttttgtgaaaatacacgaactttgtcaaaatgaggttttatggtcggataacttgcaaatggctttgta 6461066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 218 - 322
Target Start/End: Original strand, 17492367 - 17492470
Alignment:
218 ttttgtgcaaatagacaaactttgtcaaaatgagcttttatggtcacataacttgtaaatggctttgtaaacatgataacatggtaacataataatgaat 317  Q
    ||||||| |||||||| ||||||||||||||||  ||||||| ||  |||||||| ||||||| ||||| |||||||||| |||| | |||| || ||||    
17492367 ttttgtgaaaatagacgaactttgtcaaaatgaaattttatgatcggataacttgcaaatggc-ttgtatacatgataacgtggtgagataagaaggaat 17492465  T
318 caatg 322  Q
    |||||    
17492466 caatg 17492470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 218 - 322
Target Start/End: Complemental strand, 17560847 - 17560744
Alignment:
218 ttttgtgcaaatagacaaactttgtcaaaatgagcttttatggtcacataacttgtaaatggctttgtaaacatgataacatggtaacataataatgaat 317  Q
    ||||||| |||||||| ||||||||||||||||  ||||||| ||  |||||||| ||||||| ||||| |||||||||| |||| | |||| || ||||    
17560847 ttttgtgaaaatagacgaactttgtcaaaatgaaattttatgatcggataacttgcaaatggc-ttgtatacatgataacgtggtgagataagaaggaat 17560749  T
318 caatg 322  Q
    |||||    
17560748 caatg 17560744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 265 - 397
Target Start/End: Complemental strand, 26427632 - 26427498
Alignment:
265 ataacttgtaaatggctttgtaaacatgataacatggtaacataataatgaatcaatgttt-attggtgtattaaatggtttctatcatgatgtgctgga 363  Q
    |||||||| ||||| ||||| |  |||||||| ||||| | ||||  |||||||||||||| ||||||| |||||||| ||  |||||||||||| || |    
26427632 ataacttgcaaatgactttgaattcatgataatatggtgaaataaggatgaatcaatgtttgattggtgaattaaatgtttgttatcatgatgtggtgaa 26427533  T
364 atattcct-ttttatgcgattttgtaatttatgaa 397  Q
    |||||| | ||||||| ||||| || |||| ||||    
26427532 atattcgtattttatgtgatttggtgatttgtgaa 26427498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 278
Target Start/End: Complemental strand, 20147762 - 20147702
Alignment:
218 ttttgtgcaaatagacaaactttgtcaaaatgagcttttatggtcacataacttgtaaatg 278  Q
    ||||||| ||| |||| ||||||||||||||||  ||||||| ||  ||||||||||||||    
20147762 ttttgtgaaaaaagacgaactttgtcaaaatgatgttttatgatcgaataacttgtaaatg 20147702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 5e-32; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 144 - 330
Target Start/End: Original strand, 11923131 - 11923315
Alignment:
144 atatgtagggatgtttttatactgtgtaatagcttggaatcatactttggttgaggaaaattgaaaataggcgattttgtgcaaatagacaaactttgtc 243  Q
    ||||||||||||||||||||  ||||||| | ||||||||| |||||| ||||| |||||||  ||||||| ||||||||| |||||||| |||||||||    
11923131 atatgtagggatgtttttatgatgtgtaagaacttggaatcctacttttgttga-gaaaattagaaataggtgattttgtgaaaatagacgaactttgtc 11923229  T
244 aaaatgagcttttatggtcacataacttgtaaatggctttgtaaacatgataacatggtaacataataatgaatcaatgtttattgg 330  Q
    | ||| || ||||||| ||| |||| ||  ||||||||||||||||||| ||||||||| | |||| ||||||  ||||||| ||||    
11923230 agaataaggttttatgctcatataa-tttcaaatggctttgtaaacatggtaacatggtgaaataagaatgaaataatgtttgttgg 11923315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 202 - 302
Target Start/End: Complemental strand, 20847974 - 20847874
Alignment:
202 aattgaaaataggcgattttgtgcaaatagacaaactttgtcaaaatgagcttttatggtcacataacttgtaaatggctttgtaaacatgataacatgg 301  Q
    |||| ||||| | ||||||||||  ||||||| |||||| ||||||| || ||||||| ||| |||||||| ||||||||||||||||||||||||||||    
20847974 aattaaaaatggtcgattttgtgataatagacgaactttatcaaaataaggttttatgatcagataacttgcaaatggctttgtaaacatgataacatgg 20847875  T
302 t 302  Q
    |    
20847874 t 20847874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 26 - 162
Target Start/End: Original strand, 11093662 - 11093799
Alignment:
26 attaggagtgaaattagttttgaaagaagttaaaaatgagacgaactttgagtttttaagaaaatta-agaaccttgtaaaaccaaattgctatgaatgg 124  Q
    ||||||| ||||||| ||||||||| | ||||||||||||| ||||||||||||||  || | || |  ||||||||| ||| |||| |||||||| ||     
11093662 attaggattgaaattggttttgaaacatgttaaaaatgagatgaactttgagttttcgaggagataagtgaaccttgtgaaagcaaaatgctatgattga 11093761  T
125 ttaactaagatggtagataatatgtagggatgttttta 162  Q
    |||| ||||||| ||||| ||||||||| |||||||||    
11093762 ttaattaagatgttagatgatatgtaggaatgttttta 11093799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 199 - 296
Target Start/End: Complemental strand, 13933844 - 13933748
Alignment:
199 gaaaattgaaaataggcgattttgtgcaaatagacaaactttgtcaaaatgagcttttatggtcacataacttgtaaatggctttgtaaacatgataa 296  Q
    ||||||||||||||| || ||||||| |||||||| ||||||||| ||| ||| ||||||| ||  |||||||| |||||||||||||||||||||||    
13933844 gaaaattgaaaatagacgtttttgtgaaaatagacgaactttgtcgaaa-gaggttttatgatcggataacttgcaaatggctttgtaaacatgataa 13933748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 94 - 297
Target Start/End: Original strand, 17542480 - 17542683
Alignment:
94 gaaccttgtaaaaccaaattgctatgaatggttaactaagatggtagataatatgtagggatgtttttatactgtgtaatagcttggaatcatactttgg 193  Q
    ||||||||| |||||||| |||||||| || ||| | |||||| ||  | ||||||||||||||||| ||    ||||| | | ||||||||||||||      
17542480 gaaccttgtgaaaccaaaatgctatgattgattaccgaagatgttatttgatatgtagggatgttttaatgacatgtaagaacatggaatcatactttta 17542579  T
194 ttgaggaaaattgaaaataggcgattttgtgcaaatagacaaactttgtcaaaatgagcttttatggtcacataacttgtaaatggctttgtaaacatga 293  Q
    ||||| ||| ||| |||||| |||||||  | |||||||| |||||  ||||||| |  ||||||| ||  |||||||| |||||||||||| || ||||    
17542580 ttgagaaaatttggaaatagacgattttacgaaaatagacgaacttgctcaaaataaagttttatgatcggataacttgcaaatggctttgtgaatatga 17542679  T
294 taac 297  Q
    ||||    
17542680 taac 17542683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 116 - 259
Target Start/End: Complemental strand, 9269660 - 9269518
Alignment:
116 tatgaatggttaactaagatggtagataatatgtagggatgtttttatactgtgtaatagcttggaatcatactttggttgaggaaaattgaaaataggc 215  Q
    ||||| || |||||||||||| ||||| |||||||| ||||| || ||  | ||||| | ||||||| | || |||||||| | |||||||||||| | |    
9269660 tatgattgattaactaagatgttagatgatatgtagagatgtcttaatggtatgtaagaacttggaaccctaatttggttg-gtaaaattgaaaatggtc 9269562  T
216 gattttgtgcaaatagacaaactttgtcaaaatgagcttttatg 259  Q
    |||||| || |||||||| ||||||||  ||||||| |||||||    
9269561 gattttatgaaaatagacgaactttgttgaaatgaggttttatg 9269518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 258
Target Start/End: Complemental strand, 9221044 - 9220903
Alignment:
116 tatgaatggttaactaagatggtagataatatgtagggatgtttttatactgtgtaatagcttggaatcatactttggttgaggaaaattgaaaataggc 215  Q
    ||||| || |||||||||||| ||||| ||| |||||||||| || ||  | ||||| | ||||||||| || |||||||| | ||||||||| || |      
9221044 tatgattgattaactaagatgttagatgatacgtagggatgtcttaatggtatgtaagaacttggaatcctaatttggttg-gtaaaattgaatattgtt 9220946  T
216 gattttgtgcaaatagacaaactttgtcaaaatgagcttttat 258  Q
    |||||| || |||||||| ||||||||  ||||||| ||||||    
9220945 gattttatgaaaatagactaactttgttgaaatgaggttttat 9220903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 322
Target Start/End: Original strand, 12407447 - 12407495
Alignment:
274 aaatggctttgtaaacatgataacatggtaacataataatgaatcaatg 322  Q
    |||||||||||||||||||||||||| || | |||| ||||||||||||    
12407447 aaatggctttgtaaacatgataacatagtgaaataagaatgaatcaatg 12407495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 286
Target Start/End: Original strand, 10115457 - 10115525
Alignment:
218 ttttgtgcaaatagacaaactttgtcaaaatgagcttttatggtcacataacttgtaaatggctttgta 286  Q
    ||||||| ||||| |  ||||||||||||||||| ||||||| ||  |||||| | |||||||||||||    
10115457 ttttgtgaaaatatatgaactttgtcaaaatgagattttatgatcggataactcgcaaatggctttgta 10115525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 286
Target Start/End: Original strand, 16028425 - 16028485
Alignment:
226 aaatagacaaactttgtcaaaatgagcttttatggtcacataacttgtaaatggctttgta 286  Q
    ||||| || |||||||||||||| || |||| || ||| |||||||| |||||||||||||    
16028425 aaatatacgaactttgtcaaaataaggttttttgatcaaataacttgcaaatggctttgta 16028485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 94 - 300
Target Start/End: Complemental strand, 8900632 - 8900427
Alignment:
94 gaaccttgtaaaaccaaattgctatgaatggttaactaagatggtagataatatgtagggatgtttttatactgtgtaatagcttggaatcatactttgg 193  Q
    ||||||||| |||||||| ||||| || || |||||  ||||| ||||| ||||||||||||||||||||  ||||||| |   || || | || ||| |    
8900632 gaaccttgtgaaaccaaaatgctacgattgattaacctagatgttagattatatgtagggatgtttttatgatgtgtaagaatatgaaaccctaattttg 8900533  T
194 ttgaggaaaattgaaaataggcgattttgtgcaaatagacaaactttgtcaaaatgagcttttatggtcacataacttgtaaatggctttgtaaacatga 293  Q
    ||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||| |||| || ||  |||||||| |||||   |||||  |||||    
8900532 ttgag-aaaattgaaaatagtcgattttgtgaaaatagacaaactttgtcaaaatgaggttttgtgatcgaataacttgcaaatgaacttgtatgcatga 8900434  T
294 taacatg 300  Q
    |||||||    
8900433 taacatg 8900427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 69 - 161
Target Start/End: Original strand, 9637008 - 9637101
Alignment:
69 aactttgagtttttaagaaaattaag-aaccttgtaaaaccaaattgctatgaatggttaactaagatggtagataatatgtagggatgttttt 161  Q
    |||||||||||||| ||||||||||| |||||||| |||||||| || ||||| || |||||||||||| ||| | ||||||||||||||||||    
9637008 aactttgagtttttgagaaaattaaggaaccttgtgaaaccaaaatgttatgattgattaactaagatgttaggtgatatgtagggatgttttt 9637101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 14305961 - 14306026
Alignment:
226 aaatagacaaactttgtcaaaatgagcttttatggtcacataacttgtaaatggctttgtaaacat 291  Q
    ||||||||||||||||||||||| || ||||||| ||  |||||||| ||||||||||||||||||    
14305961 aaatagacaaactttgtcaaaataagattttatgatcggataacttgcaaatggctttgtaaacat 14306026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 304
Target Start/End: Original strand, 19977897 - 19977975
Alignment:
226 aaatagacaaactttgtcaaaatgagcttttatggtcacataacttgtaaatggctttgtaaacatgataacatggtaa 304  Q
    ||||| || ||||||||||||||||| ||||||| ||| |||| ||| ||||| ||||| ||| ||||||| |||||||    
19977897 aaataaacgaactttgtcaaaatgagtttttatgatcaaataatttgcaaatgactttgaaaatatgataatatggtaa 19977975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 320
Target Start/End: Original strand, 21093740 - 21093834
Alignment:
226 aaatagacaaactttgtcaaaatgagcttttatggtcacataacttgtaaatggctttgtaaacatgataacatggtaacataataatgaatcaa 320  Q
    |||||||  ||||||||||||||||| |||| || |   |||||||| || |||||||||| ||||||||||||||| | |||| ||| ||||||    
21093740 aaatagatgaactttgtcaaaatgaggttttctgattggataacttgcaattggctttgtatacatgataacatggtgaaataagaataaatcaa 21093834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 333
Target Start/End: Original strand, 10711101 - 10711238
Alignment:
197 aggaaaattgaaaataggcgattttgtgcaaatagacaaactttgtcaaaatgagcttttatggtcacataacttgtaaatggctttgtaaacatgataa 296  Q
    |||||||||| ||||||| ||||||||| |||||||| | ||| |  ||||||||  |||||| |   |||||||| || ||| ||| ||  ||||||||    
10711101 aggaaaattggaaataggagattttgtgaaaatagacgagcttaggtaaaatgagggtttatgatttaataacttgcaattggttttatattcatgataa 10711200  T
297 catggtaacataataatgaatcaatgttt-attggtgt 333  Q
    |||| | | |||| || |||||||||||| ||||||||    
10711201 catgatgaaataagaaggaatcaatgtttgattggtgt 10711238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 19977714 - 19977778
Alignment:
26 attaggagtgaaattagttttgaaagaagttaaaaatgagacgaactttgagtttttaagaaaat 90  Q
    ||||||| |||||||  |||||||| | ||||||||| |||  |||||||||||||| |||||||    
19977714 attaggattgaaattgattttgaaacatgttaaaaataagaataactttgagtttttgagaaaat 19977778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 94 - 295
Target Start/End: Original strand, 14486642 - 14486843
Alignment:
94 gaaccttgtaaaaccaaattgctatgaatggttaactaagatggtagataatatgtagggatgtttttatactgtgtaatagcttggaatcatactttgg 193  Q
    ||||||||| |||| ||  |||||||| || ||| |  ||||| ||||| |||||||||||||| || ||  ||||||| |   ||||||| |||||| |    
14486642 gaaccttgtgaaacgaatatgctatgattgattaccctagatgttagatgatatgtagggatgtcttgatgatgtgtaagaatatggaatcctacttttg 14486741  T
194 ttgaggaaaattgaaaataggcgattttgtgcaaatagacaaactttgtcaaaatgagcttttatggtcacataacttgtaaatggctttgtaaacatga 293  Q
    ||||| ||||| ||||||||| ||||||||| |||||||| ||||||||||||||||   ||||||||   |||||||| |||||| ||||||  |||||    
14486742 ttgagaaaaatcgaaaataggtgattttgtgaaaatagacgaactttgtcaaaatgaaggtttatggttgaataacttgcaaatggttttgtattcatga 14486841  T
294 ta 295  Q
    ||    
14486842 ta 14486843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 139 - 322
Target Start/End: Original strand, 23089731 - 23089913
Alignment:
139 agataatatgtagggatgtttttatactgtgtaatagcttggaatcatactttggttgaggaaaattgaaaataggcgattttgtgcaaatagacaaact 238  Q
    |||| |||||||||||||| ||||| ||  |||| | |||||| ||| ||||| ||| ||||||||||||||||||| |||||||  |||||| | ||||    
23089731 agatgatatgtagggatgtatttatgcttcgtaagaacttggagtcacacttttgtttaggaaaattgaaaataggctattttgtaaaaatagtcgaact 23089830  T
239 ttgtcaaaatgagcttttatggtcacataacttgtaaatggctttgtaaacatgataacatggtaacataataatgaatcaatg 322  Q
    | |||||||||||  |||||| |   |||||||| ||||| |||||||| ||| |||| ||| ||  |||| ||||||||||||    
23089831 tggtcaaaatgag-gtttatgattgtataacttgcaaatgactttgtaatcataataatatgatagaataagaatgaatcaatg 23089913  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 200 - 322
Target Start/End: Original strand, 21746590 - 21746712
Alignment:
200 aaaattgaaaataggcgattttgtgcaaatagacaaactttgtcaaaatgagcttttatggtcacataacttgtaaatggctttgtaaacatgataacat 299  Q
    |||||||||||| |||||||||    |||||||| ||||| ||||||||||| ||||||| ||  |||||||| |||||| |||||  ||||||||||||    
21746590 aaaattgaaaattggcgattttaacaaaatagacgaacttagtcaaaatgaggttttatgatcggataacttgcaaatggttttgtgtacatgataacat 21746689  T
300 ggtaacataataatgaatcaatg 322  Q
    ||| |  ||| ||||||||||||    
21746690 ggtgaattaaaaatgaatcaatg 21746712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 200 - 330
Target Start/End: Complemental strand, 14634055 - 14633925
Alignment:
200 aaaattgaaaataggcgattttgtgcaaatagacaaactttgtcaaaatgagcttttatggtcacataacttgtaaatggctttgtaaacatgataacat 299  Q
    ||||||| ||||||||||||||||| |||||||| ||||||| |||||||||  |||||| |    || |||| |||||| ||| ||| |||||||| ||    
14634055 aaaattggaaataggcgattttgtgaaaatagacgaactttgccaaaatgagggtttatgcttttttatcttgaaaatggttttataatcatgataatat 14633956  T
300 ggtaacataataatgaatcaatgtttattgg 330  Q
    |   | |||| ||||||||||||||| ||||    
14633955 gaggaaataagaatgaatcaatgtttgttgg 14633925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 322
Target Start/End: Original strand, 12465497 - 12465599
Alignment:
220 ttgtgcaaatagacaaactttgtcaaaatgagcttttatggtcacataacttgtaaatggctttgtaaacatgataacatggtaacataataatgaatca 319  Q
    ||||| |||||||| ||||||||||||||||  ||||||||||  ||||||||||| ||  ||||||  |||||| | ||| ||  |||| |||||||||    
12465497 ttgtgaaaatagacgaactttgtcaaaatgatgttttatggtcgaataacttgtaattgattttgtattcatgatgatatgatagaataagaatgaatca 12465596  T
320 atg 322  Q
    |||    
12465597 atg 12465599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 7e-22; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 132 - 321
Target Start/End: Original strand, 23153816 - 23154005
Alignment:
132 agatggtagataatatgtagggatgtttttatactgtgtaatagcttggaatcatactttggttgaggaaaattgaaaataggcgattttgtgcaaatag 231  Q
    ||||| ||||| ||||||||||||||||| ||  | | || ||   |||||||||||||  |||||  ||||||||||||   |||||||||| ||||||    
23153816 agatgatagatgatatgtagggatgttttcatgatatttagtaatatggaatcatacttatgttgaataaaattgaaaatgaacgattttgtgaaaatag 23153915  T
232 acaaactttgtcaaaatgagcttttatggtcacataacttgtaaatggctttgtaaacatgataacatggtaacataataatgaatcaat 321  Q
    || |||||| |||||||||| ||||||| ||  |||||||| |||||||||||||| ||| |||| | | ||  |||| |||||||||||    
23153916 acgaactttatcaaaatgaggttttatgatcggataacttgcaaatggctttgtaatcataataataggatagaataagaatgaatcaat 23154005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 132 - 321
Target Start/End: Original strand, 23565073 - 23565262
Alignment:
132 agatggtagataatatgtagggatgtttttatactgtgtaatagcttggaatcatactttggttgaggaaaattgaaaataggcgattttgtgcaaatag 231  Q
    ||||| ||||| ||||||||||||||||| ||  | | || ||   |||||||||||||  |||||  ||||||||||||   |||||||||| ||||||    
23565073 agatgatagatgatatgtagggatgttttcatgatatttagtaatatggaatcatacttatgttgaataaaattgaaaatgaacgattttgtgaaaatag 23565172  T
232 acaaactttgtcaaaatgagcttttatggtcacataacttgtaaatggctttgtaaacatgataacatggtaacataataatgaatcaat 321  Q
    || |||||| |||||||||| ||||||| ||  |||||||| |||||||||||||| ||| |||| | | ||  |||| |||||||||||    
23565173 acgaactttatcaaaatgaggttttatgatcggataacttgcaaatggctttgtaatcataataataggatagaataagaatgaatcaat 23565262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 320
Target Start/End: Original strand, 39668284 - 39668465
Alignment:
138 tagataatatgtagggatgtttttatactgtgtaatagcttggaatcatactttggttgaggaaaattgaaaataggcgattttgtgcaaatagacaaac 237  Q
    ||||| ||||||||||| ||||| ||  |||| || | ||||  ||| |||||| |||||| ||||  ||||||| ||||||||||| |||||||  |||    
39668284 tagatgatatgtagggaggttttaatgatgtgcaagaacttgagatcctacttttgttgagaaaaagggaaaataagcgattttgtgaaaatagattaac 39668383  T
238 tttgtcaaaatgagcttttatggtcacataacttgtaaatggctttgtaaacatgataacatggtaacataataatgaatcaa 320  Q
    ||| ||||||| || ||||| | ||  |||||| | |||||| ||||||  |||||| ||||| | | |||| ||||||||||    
39668384 ttt-tcaaaatcaggttttaagatcgaataactagcaaatggttttgtattcatgattacatgatgaaataagaatgaatcaa 39668465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1924 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold1924
Description:

Target: scaffold1924; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 186 - 300
Target Start/End: Original strand, 272 - 386
Alignment:
186 tactttggttgaggaaaattgaaaataggcgattttgtgcaaatagacaaactttgtcaaaatgagcttttatggtcacataacttgtaaatggctttgt 285  Q
    |||||| |||||||||||||  |||||| | |||||||| |||||||| ||||||||||||||||| ||||||| ||  |||||||| ||| | |||| |    
272 tacttttgttgaggaaaatttcaaatagacaattttgtgaaaatagacgaactttgtcaaaatgaggttttatgatcgaataacttgcaaacgactttat 371  T
286 aaacatgataacatg 300  Q
     ||||||||||||||    
372 gaacatgataacatg 386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 193 - 297
Target Start/End: Original strand, 30190269 - 30190373
Alignment:
193 gttgaggaaaattgaaaataggcgattttgtgcaaatagacaaactttgtcaaaatgagcttttatggtcacataacttgtaaatggctttgtaaacatg 292  Q
    ||||||| |||||| |||||| ||||||| || |||||||| ||||| ||||||||| | ||||||| ||| |||||||| ||||  |||||| ||||||    
30190269 gttgagggaaattggaaatagacgattttatgaaaatagacgaacttcgtcaaaatggggttttatgatcagataacttgcaaattactttgtgaacatg 30190368  T
293 ataac 297  Q
    |||||    
30190369 ataac 30190373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 251
Target Start/End: Complemental strand, 22806939 - 22806895
Alignment:
207 aaaataggcgattttgtgcaaatagacaaactttgtcaaaatgag 251  Q
    |||||||||||||||||| ||||| || |||||||||||||||||    
22806939 aaaataggcgattttgtgaaaatatacgaactttgtcaaaatgag 22806895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 205 - 302
Target Start/End: Original strand, 33972 - 34069
Alignment:
205 tgaaaataggcgattttgtgcaaatagacaaactttgtcaaaatgagcttttatggtcacataacttgtaaatggctttgtaaacatgataacatggt 302  Q
    |||||||||| ||||||||| |||||||  |||||||||||||| |   |||||| ||  |||||||| | ||| |||||||||||||||||||||||    
33972 tgaaaataggtgattttgtgaaaatagatgaactttgtcaaaataaatctttatgatcttataacttgcacatgactttgtaaacatgataacatggt 34069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 94 - 159
Target Start/End: Complemental strand, 36009 - 35944
Alignment:
94 gaaccttgtaaaaccaaattgctatgaatggttaactaagatggtagataatatgtagggatgttt 159  Q
    ||||||||| |||||||| |||||||| || |||||||||||| ||||| ||||||||||||||||    
36009 gaaccttgtgaaaccaaaatgctatgattgattaactaagatgttagatgatatgtagggatgttt 35944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 217 - 259
Target Start/End: Original strand, 40612 - 40654
Alignment:
217 attttgtgcaaatagacaaactttgtcaaaatgagcttttatg 259  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
40612 attttgtgaaaatagacaaactttgtcaaaatgagcttttatg 40654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 265 - 333
Target Start/End: Original strand, 10607 - 10675
Alignment:
265 ataacttgtaaatggctttgtaaacatgataacatggtaacataataatgaatcaatgtttattggtgt 333  Q
    |||||||| |||||||||||||||||||||||||| || | |||| || ||||||||| || |||||||    
10607 ataacttgcaaatggctttgtaaacatgataacatagtgaaataagaaggaatcaatgattgttggtgt 10675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 204 - 295
Target Start/End: Complemental strand, 24370014 - 24369923
Alignment:
204 ttgaaaataggcgattttgtgcaaatagacaaactttgtcaaaatgagcttttatggtcacataacttgtaaatggctttgtaaacatgata 295  Q
    |||||||| ||| |||||||| |||||||| | |||| |  ||||||| ||||||| ||  |||| ||||||||||||||||| ||||||||    
24370014 ttgaaaatcggcaattttgtgaaaatagacgagctttattgaaatgaggttttatgatcggataatttgtaaatggctttgtatacatgata 24369923  T

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Target: scaffold0135 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 258
Target Start/End: Complemental strand, 31695 - 31554
Alignment:
116 tatgaatggttaactaagatggtagataatatgtagggatgtttttatactgtgtaatagcttggaatcatactttggttgaggaaaattgaaaataggc 215  Q
    ||||| || |||||||||||| ||||| ||| |||||||||| || ||  | ||||| | ||||||||| || |||||||| | ||||||||| || |      
31695 tatgattgattaactaagatgttagatgatacgtagggatgtcttaatggtatgtaagaacttggaatcctaatttggttg-gtaaaattgaatattgtt 31597  T
216 gattttgtgcaaatagacaaactttgtcaaaatgagcttttat 258  Q
    |||||| || |||||||| ||||||||  ||||||| ||||||    
31596 gattttatgaaaatagactaactttgttgaaatgaggttttat 31554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 138 - 251
Target Start/End: Complemental strand, 3846 - 3733
Alignment:
138 tagataatatgtagggatgtttttatactgtgtaatagcttggaatcatactttggttgaggaaaattgaaaataggcgattttgtgcaaatagacaaac 237  Q
    ||||| ||||||||| ||||||| ||  ||||||| ||||| | ||| ||||||  ||   ||||||||||||||| | |||||| | |||||||| |||    
3846 tagatgatatgtaggaatgttttgatgatgtgtaagagcttagtatcctactttttttttagaaaattgaaaatagacaattttgggaaaatagacgaac 3747  T
238 tttgtcaaaatgag 251  Q
    ||| ||||||||||    
3746 tttatcaaaatgag 3733  T

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Target: scaffold0123 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 296
Target Start/End: Complemental strand, 34455 - 34423
Alignment:
264 cataacttgtaaatggctttgtaaacatgataa 296  Q
    |||||||||||||||| ||||||||||||||||    
34455 cataacttgtaaatggatttgtaaacatgataa 34423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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