View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13310_low_10 (Length: 535)
Name: NF13310_low_10
Description: NF13310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13310_low_10 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 16 - 535
Target Start/End: Original strand, 2063779 - 2064301
Alignment:
| Q |
16 |
cataaccatggtgtattataattggcaagaaagaatacaaactacta---aaaacaaccc-ataatatttttgtatagagaaagnnnnnnnnttatccat |
111 |
Q |
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| T |
2063779 |
cataatcatggtgtattataattggcaagaaagaatacaaactactactaaaaacaaccccataatatttttgtatagagagaaaaaaaaaattatccat |
2063878 |
T |
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| Q |
112 |
aattggtgcgcctttttacaagatccaatattataattccttgtatcatttcatctaatttaacattcctaaaaatattcatgatctaaatcccaaaatc |
211 |
Q |
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| T |
2063879 |
aattggtgcgtctttttacaagatccaatattataattccttgtatcttttcatctaatt-aacattcctaaaaatattcatgatctaaatcccaaaatc |
2063977 |
T |
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| Q |
212 |
accatacctctactcatttgcattaattttgttctaaagcctcaaaggaaaatcaaaagtgaagccaaataacatagtagcaaatgtttacaaagattnn |
311 |
Q |
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| T |
2063978 |
accatacctctactcatttgcattaattttgttctaaagcctcaaaggaaaatcaaaagtgaagccaaataacatagtagcaaatgtttacaaagattaa |
2064077 |
T |
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| Q |
312 |
nnnnnnnnnnnttatatcgaaatttataaacctaaatgttaatgtactttaccaatcatacccctgaaagccaccgaaacatttcactaatttcttcacc |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2064078 |
aaataaaaaaattatatcgaaatttataaacctaaatgttaatgtactttaccaatcatacccctgaaagccaccgaaacatttcactaatctcttcacc |
2064177 |
T |
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| Q |
412 |
aattctgttaccttcaacgtcataatcaaccggttcaattctgcgactacttccacctccggcgaagaatcttccagaactccgaaacgacgccgttcgc |
511 |
Q |
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| T |
2064178 |
aattctgttaccttcaacgtcataatcaaccggttcaattctgcgactacttccacctccggcgaagaatcttccagaactccgaaacgacgccgttcgc |
2064277 |
T |
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| Q |
512 |
gatgaaatcgaagccgatagtctg |
535 |
Q |
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| T |
2064278 |
gatgaaatcgaagccgatagtctg |
2064301 |
T |
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