View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13310_low_15 (Length: 351)
Name: NF13310_low_15
Description: NF13310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13310_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 15 - 335
Target Start/End: Complemental strand, 28331943 - 28331624
Alignment:
| Q |
15 |
aatatatataaccaatggaaaggggaaaagcgatgaagatataaaccacctccctcaaaaacaaaatagccatgaaccaccaaacacttctactagtggt |
114 |
Q |
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| T |
28331943 |
aatatatataaccaatggaaagggcaaaagcgat-aagatataaactacctccctcaaaaacaaaatagccatgaaccaccaaacacttctactagtggt |
28331845 |
T |
|
| Q |
115 |
tacctttgcaagtgcaagcattctcatctttattcttagaaaagttaaacaaacccaaaattccactaagcttccaccagggccaaacccatttcccata |
214 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
28331844 |
tacctttgcaagtgcaagcattctcatctttattattagaaaagttaaacaaacccaaaattccaccaagcttccaccagggccaaacccatttcccata |
28331745 |
T |
|
| Q |
215 |
attggaaacatcttagaacttggcaaaaatccacacaaggcacttacaaaactctcaaaaacctatggaccaatcatgacattaaaactaggaacattaa |
314 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28331744 |
attggaaacatcttagaacttggcaaaaacccacacaaggcactcacaaaactctcaaaaacctatggaccaatcatgacattaaaactaggaacattaa |
28331645 |
T |
|
| Q |
315 |
caaccatagtaatctcatcac |
335 |
Q |
| |
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||||||||||||||||||||| |
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| T |
28331644 |
caaccatagtaatctcatcac |
28331624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 85 - 330
Target Start/End: Complemental strand, 28321395 - 28321150
Alignment:
| Q |
85 |
catgaaccaccaaacacttctactagtggttacctttgcaagtgcaagcattctcatctttattcttagaaaagttaaacaaacccaaaattccactaag |
184 |
Q |
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|||| |||| |||||||||||||||||| || |||||| |||||||| |||||||||||| |||||||||||| || |||||||||||||| ||||| |
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| T |
28321395 |
catggaccatcaaacacttctactagtgatttcctttgtaagtgcaaccattctcatcttcattcttagaaaatcaaaccaaacccaaaattctactaaa |
28321296 |
T |
|
| Q |
185 |
cttccaccagggccaaacccatttcccataattggaaacatcttagaacttggcaaaaatccacacaaggcacttacaaaactctcaaaaacctatggac |
284 |
Q |
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||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||| |
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| T |
28321295 |
cttccaccagggccaaagccacttcccatcattggaaacatcttagaacttggcaaaaatccacacaaggcattaacaaaactctcaaaaatctatggac |
28321196 |
T |
|
| Q |
285 |
caatcatgacattaaaactaggaacattaacaaccatagtaatctc |
330 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
28321195 |
caatcatgacattaaaactaggaagcataacaaccatagtgatctc |
28321150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 93 - 333
Target Start/End: Complemental strand, 28297325 - 28297085
Alignment:
| Q |
93 |
accaaacacttctactagtggttacctttgcaagtgcaagcattctcatctttattcttagaaaagttaaacaaacccaaaattccactaagcttccacc |
192 |
Q |
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|
|||||||||||||||||||| |||||| | || ||| |||||||||||| |||||||||||| | | |||||||||||||| ||||| |||||||| |
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| T |
28297325 |
accaaacacttctactagtgattacctctttgtgtacaaccattctcatcttcattcttagaaaattaatccaaacccaaaattctactaaacttccacc |
28297226 |
T |
|
| Q |
193 |
agggccaaacccatttcccataattggaaacatcttagaacttggcaaaaatccacacaaggcacttacaaaactctcaaaaacctatggaccaatcatg |
292 |
Q |
| |
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||||||| ||||| ||||||| || |||||||||||||||||||||||||| ||||| |||||||| |||||||||||| ||| |||||||||||||||| |
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| T |
28297225 |
agggccatacccacttcccatcataggaaacatcttagaacttggcaaaaacccacataaggcactcacaaaactctcacaaaactatggaccaatcatg |
28297126 |
T |
|
| Q |
293 |
acattaaaactaggaacattaacaaccatagtaatctcatc |
333 |
Q |
| |
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||| |||||||||||||| |||||||||||||||| ||||| |
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| T |
28297125 |
acactaaaactaggaacaataacaaccatagtaatttcatc |
28297085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 93 - 335
Target Start/End: Complemental strand, 28310813 - 28310571
Alignment:
| Q |
93 |
accaaacacttctactagtggttacctttgcaagtgcaagcattctcatctttattcttagaaaagttaaacaaacccaaaattccactaagcttccacc |
192 |
Q |
| |
|
|||||||||||||||| ||| |||||| | |||| |||||||||||||| ||| ||| |||| | || ||||| |||||||| || || |||||||| |
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| T |
28310813 |
accaaacacttctactggtgattacctctttgtgtgcgagcattctcatcttcatttttaaaaaattaaaccaaactcaaaattctacaaaacttccacc |
28310714 |
T |
|
| Q |
193 |
agggccaaacccatttcccataattggaaacatcttagaacttggcaaaaatccacacaaggcacttacaaaactctcaaaaacctatggaccaatcatg |
292 |
Q |
| |
|
||||||||| ||| ||||||| || |||||||||||| ||||||||||||||||||||| | |||| ||||| |||||||| | |||||||||||| ||| |
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| T |
28310713 |
agggccaaaaccacttcccatcataggaaacatcttacaacttggcaaaaatccacacaggacactcacaaatctctcaaacatctatggaccaattatg |
28310614 |
T |
|
| Q |
293 |
acattaaaactaggaacattaacaaccatagtaatctcatcac |
335 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
28310613 |
acactaaaactaggaacattaacaaccatagtaatctcatcac |
28310571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 117 - 335
Target Start/End: Original strand, 28287912 - 28288130
Alignment:
| Q |
117 |
cctttgcaagtgcaagcattctcatctttattcttagaaaagttaaacaaacccaaaattccactaagcttccaccagggccaaacccatttcccataat |
216 |
Q |
| |
|
|||||| |||||||||||| |||||| | |||||||||||| | || ||||| |||||||| || || ||||||||||||||||| ||| ||||||| || |
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| T |
28287912 |
cctttgtaagtgcaagcatcctcatcctcattcttagaaaattaaaccaaactcaaaattctacaaaacttccaccagggccaaagccacttcccatcat |
28288011 |
T |
|
| Q |
217 |
tggaaacatcttagaacttggcaaaaatccacacaaggcacttacaaaactctcaaaaacctatggaccaatcatgacattaaaactaggaacattaaca |
316 |
Q |
| |
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|||||||||||| ||||||||||||| ||||||| | |||| ||||| |||||||| | |||||||||||| |||||| |||||||||||||||||||| |
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| T |
28288012 |
aggaaacatcttacaacttggcaaaaacccacacaggacactcacaaatctctcaaacatctatggaccaattatgacactaaaactaggaacattaaca |
28288111 |
T |
|
| Q |
317 |
accatagtaatctcatcac |
335 |
Q |
| |
|
||||||||||| ||||||| |
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| T |
28288112 |
accatagtaatttcatcac |
28288130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 333
Target Start/End: Complemental strand, 28336523 - 28336410
Alignment:
| Q |
222 |
acatcttagaacttggcaaaaatccacacaaggcacttacaaaa---ctctcaaaaacctatggaccaatcatgacattaaaactagg-aacattaacaa |
317 |
Q |
| |
|
|||||| ||||||| | ||||| ||||||||| |||| |||||| ||||| |||| ||| ||||||||||||||| ||||||| || |||| ||||| |
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| T |
28336523 |
acatctcagaactttg-aaaaacccacacaagtcactcacaaaaaaactctctaaaatctacggaccaatcatgacactaaaacttggcaaca-taacat |
28336426 |
T |
|
| Q |
318 |
ccatagtaatctcatc |
333 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
28336425 |
ccatagtaatctcatc |
28336410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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