View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13310_low_18 (Length: 314)
Name: NF13310_low_18
Description: NF13310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13310_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 14 - 295
Target Start/End: Original strand, 44663327 - 44663608
Alignment:
| Q |
14 |
atatggccacagaaaaacgtatattttctttctagataccatagtaacactattaaggtacacaatctcaattcggaattttcaattgcatgtctcaaat |
113 |
Q |
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|||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44663327 |
atatggccacagaaaaacgtatattttctttcaagatactatagtaacactattaaggtacacaatctcaattcggaattttcaattgcatgtctcaaat |
44663426 |
T |
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| Q |
114 |
tgcagtttatattcaaattgagttggcagtttccattcaaagagtgtaaaataaattttcagtcgcagaaaactcaaccaccttagcaacatgtaagtgg |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44663427 |
tgcagtttatattcaaattgagttggcagtttccattcaaagagtgtaaaacaaattttcagtcgcagaaaactcaaccaccttagcaacatgtaagtgg |
44663526 |
T |
|
| Q |
214 |
ctgctattatgtacacgtgcgagaagctgcttacgagtaacatagttctatttggagtttggacccacaaatgtgagacctg |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44663527 |
ctgctattatgtacacgtgcgagaagctgcttacgagtaacatagttctatttggagtttggacccacaaatgtgagacctg |
44663608 |
T |
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