View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13310_low_2 (Length: 683)
Name: NF13310_low_2
Description: NF13310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13310_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 233 - 665
Target Start/End: Complemental strand, 49099727 - 49099292
Alignment:
| Q |
233 |
tactacttacagtatcaattatca---actcacgattctactcctgtaactactttaattaacaagattactttgcaaacaaagacttattaccatagaa |
329 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49099727 |
tactacttacagtatcaattatcatcaactcacgattctactcctgtaactactttaattaacaagattactttgcaaacaaagacttattaccatagaa |
49099628 |
T |
|
| Q |
330 |
tttaatacaccttgtttagggggccctcccttatttcaaagttatagaattatatacatgagaatgatattctcagaaattatttgcacaaatatagtat |
429 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49099627 |
tttaatacaccttgtttaggggcccctcccttatttcaaagttatagaattatatacatgagaatgatattctcagaaattatttgcacaaatatagtat |
49099528 |
T |
|
| Q |
430 |
acatttggtaaatttttgtagaaaattatttagttcaaaaatatacaattagaaatattgcaaattgttgggtcattctagagagcctatattattgggg |
529 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
49099527 |
acatttggtaaatttttgtagaaaattatttagttcaaaaatatacaattagaaatattgcaaattgttaggtcattctagagagcctatattattgggg |
49099428 |
T |
|
| Q |
530 |
tgggtcattacattaaaccaaaaacaatgacaaataagcttgaatatcatatcttcattcaaaattgagacatcatatatgagttatttcacttatannn |
629 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49099427 |
tgggtcattacattaaaccaagaacaatgacaaataagcttgaatatcatatcttcattcaaaattgagacatcatatatgagttatttcacttatattt |
49099328 |
T |
|
| Q |
630 |
nnnnctaacattcacattaaccttcaatgtgagact |
665 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |
|
|
| T |
49099327 |
tgttctaaccttcacattaaccttcaatgtgagact |
49099292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 14 - 240
Target Start/End: Complemental strand, 49099970 - 49099744
Alignment:
| Q |
14 |
gagatgaacagagaaagaaggaaagggttaaatgttgtatggcatgtttgttttatctaggaaattatattgattgccttagttaaatatagtggatgag |
113 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
49099970 |
gagatgaacagagaaagaagaaaagagttaaatgttgtatgacatgtttgttttatctaggaaattatatcgattgccttagttaaatatagtggatgag |
49099871 |
T |
|
| Q |
114 |
ttgatgacttgaattgcacacataatagcactttgacttgtcattattattactgctaaattgtttgcaataagagtgtttatctcttgtttgtcattaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49099870 |
ttgatgacttgaattgcacacataatagcactttgacttgtcattattattactgctaaattgtttgcaataagagtgtttatctcttgtttgtcattaa |
49099771 |
T |
|
| Q |
214 |
gtaccaataaaatattaattactactt |
240 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
49099770 |
gtaccaataaaatattaattactactt |
49099744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University