View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13310_low_20 (Length: 294)
Name: NF13310_low_20
Description: NF13310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13310_low_20 |
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| [»] scaffold0191 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 9 - 192
Target Start/End: Complemental strand, 929929 - 929746
Alignment:
| Q |
9 |
cagaacctgtgctctcaatttttgcaacattgtggtatcaaaggtgggaagaaaggtaggaaattctcacatttatcgtgtatggatggatacaatctaa |
108 |
Q |
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| T |
929929 |
cagaacccgtgctctcaatttttgcaacattgtggtatcaaaggtggtaagaaaggtaggaaattctcacatttatcgtgtatggatggatacaatctaa |
929830 |
T |
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| Q |
109 |
tgcattttgctaggtagaaatcaaattatctttgaaggaaactcaatgaatgtaagcggcatagtgtcgcatattaaaatggtt |
192 |
Q |
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| T |
929829 |
tgcatttttctaggtagaaatcaaattatctttgaaggaaactcaatgaatgtaagcggcatagtgtcgcatattaaaatggtt |
929746 |
T |
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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 239
Target Start/End: Complemental strand, 929676 - 929642
Alignment:
| Q |
205 |
ggatggaatcgaggactaaaccgttaaacggttat |
239 |
Q |
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| T |
929676 |
ggatggaatcgaggactaaaccgttaaactgttat |
929642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0191 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0191
Description:
Target: scaffold0191; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 24919 - 24981
Alignment:
| Q |
21 |
tctcaatttttgcaacattgtggtatcaaaggtgggaagaaaggtaggaaattctcacattta |
83 |
Q |
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| T |
24919 |
tctcatttattgcaacactgtggtatcaaaggtggtaagaaagataggaaatgctcacattta |
24981 |
T |
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