View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13310_low_22 (Length: 280)
Name: NF13310_low_22
Description: NF13310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13310_low_22 |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0232 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 5 - 280
Target Start/End: Complemental strand, 47911237 - 47910962
Alignment:
| Q |
5 |
ataggaacctgtggtcctcaatgaaaactacaatattcaaacatttatatatcattaaacaaagacaaccataatatgttttgtttctaaaaagcacgaa |
104 |
Q |
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| T |
47911237 |
ataggcacttgtggtcctcaatgaaaactacaatattcaaacatttgtatatcattaaacaaagacaaccataatatgttttgtttctaaaaagcatgaa |
47911138 |
T |
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| Q |
105 |
ctctgccggaacaaaataaaattaaactaactaatgcaatgatgcaagtaactcaaatacaactaatttttctacataccagattcatactaacatcata |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
47911137 |
ctctgccggaacaaaataaaattaaactaactaatgcaatgatgcaagtaactcaaatacaactaatttttttacataccagattcatactaacatcata |
47911038 |
T |
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| Q |
205 |
taattttatcatgttataaactatgacacatattgaaagacaaaaatgaagtaatcttcttgtaattcattccccc |
280 |
Q |
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| T |
47911037 |
taattttatcatgttataaactatgacacttattgaaagacaaaaatgaagtaatcttcttgtaattcattccccc |
47910962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 5 - 280
Target Start/End: Complemental strand, 7187026 - 7186751
Alignment:
| Q |
5 |
ataggaacctgtggtcctcaatgaaaactacaatattcaaacatttatatatcattaaacaaagacaaccataatatgttttgtttctaaaaagcacgaa |
104 |
Q |
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| T |
7187026 |
ataggcacttgtggtcctcaatgaaaactacaatattcaaacatttgtatatcattaaacaaagacaaccataatatgttttgtttctaaaaagcatgaa |
7186927 |
T |
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| Q |
105 |
ctctgccggaacaaaataaaattaaactaactaatgcaatgatgcaagtaactcaaatacaactaatttttctacataccagattcatactaacatcata |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
7186926 |
ctctgccggaacaaaataaaattaaactaactaatgcaatgatgcaagtaactcaaatacaactaatttttttacataccagattcatactaacatcata |
7186827 |
T |
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| Q |
205 |
taattttatcatgttataaactatgacacatattgaaagacaaaaatgaagtaatcttcttgtaattcattccccc |
280 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7186826 |
taattttatcatgttataaactatgacacttattgaaagacaaaaatgaagtaatcttcttgtaattcattccccc |
7186751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0232 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0232
Description:
Target: scaffold0232; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 13368 - 13306
Alignment:
| Q |
5 |
ataggaacctgtggtcctcaatgaaaactacaatattcaaacatttatatatcattaaacaaa |
67 |
Q |
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| T |
13368 |
ataggcacatgttgtcctcaatgaaaactacaatattcaaacatttgtatatcattaaacaaa |
13306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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