View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13310_low_23 (Length: 278)
Name: NF13310_low_23
Description: NF13310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13310_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 23 - 264
Target Start/End: Original strand, 34085266 - 34085521
Alignment:
| Q |
23 |
ttggcgtcgtgggaagtggtgggagaagtgagggtattagggtttgtgttttggttaaaggagattttaggtttttgagagggttcaagtacgttagagg |
122 |
Q |
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| T |
34085266 |
ttggcgtcgtgggaagtggtgggagaagtgagggtattagggtttgtgttttggttaaaggagattttaggtttttgagagggttcaagtacgttagagg |
34085365 |
T |
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| Q |
123 |
gttttattttgatgcaaccacaggttttgttagaggagaaaagggttttgacgaggcttctcttattgaaattgaaagacataat--------------t |
208 |
Q |
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| T |
34085366 |
gttttattttgatgcaaccacagcttttgttagaggagaaaagggttttgacgaggcttctcttattgaaattgaaagacataattaaaggactatgact |
34085465 |
T |
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| Q |
209 |
atggttttggttatgagaggaataagggtatacgtgagaggtatagatgatgatgt |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34085466 |
atggttttggttatgagaggaataagggtatacgtgagaggtatagatgatgatgt |
34085521 |
T |
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